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Volumn 15, Issue 6, 2004, Pages 2842-2852

An Lsm2-Lsm7 complex in saccharomyces cerevisiae associates with the small nucleolar RNA snR5

Author keywords

[No Author keywords available]

Indexed keywords

CORE PROTEIN; MESSENGER RNA; PROTEIN; PROTEIN GAR1P; PROTEIN LSM2; PROTEIN LSM7; PROTEIN NHP2P; RIBONUCLEASE; RIBOSOME RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEOLAR RNA; SMALL NUCLEOLAR RNA SNR5; UNCLASSIFIED DRUG;

EID: 2542459281     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.E04-02-0116     Document Type: Article
Times cited : (34)

References (48)
  • 1
    • 0033569743 scopus 로고    scopus 로고
    • A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
    • Achsel, T., Brahms, H., Kastner, B., Bachi, A., Wilm, M., and Luhrmann, R. (1999). A doughnut-shaped heteromer of human Sm-like proteins binds to the 3′-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 18, 5789-5802.
    • (1999) EMBO J. , vol.18 , pp. 5789-5802
    • Achsel, T.1    Brahms, H.2    Kastner, B.3    Bachi, A.4    Wilm, M.5    Luhrmann, R.6
  • 3
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin, A., and Ofengand, J. (1993). Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 32, 9754-9762.
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 4
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • Balakin, A.G., Smith, L., and Fournier, M.J. (1996). The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 86, 823-834.
    • (1996) Cell , vol.86 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 5
    • 0034599976 scopus 로고    scopus 로고
    • A Sm-like protein complex that participates in mRNA degradation
    • Bouveret, E., Rigaut, G., Shevchenko, A., Wilm, M., and Seraphin, B. (2000). A Sm-like protein complex that participates in mRNA degradation. EMBO J. 19, 1661-1671.
    • (2000) EMBO J. , vol.19 , pp. 1661-1671
    • Bouveret, E.1    Rigaut, G.2    Shevchenko, A.3    Wilm, M.4    Seraphin, B.5
  • 6
    • 0034635982 scopus 로고    scopus 로고
    • Identification and characterization of a host protein required for efficient template selection in viral RNA replication
    • Diez, J., Ishikawa, M., Kaido, M., and Ahlquist, P. (2000). Identification and characterization of a host protein required for efficient template selection in viral RNA replication. Proc. Natl. Acad. Sci. USA 97, 3913-3918.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 3913-3918
    • Diez, J.1    Ishikawa, M.2    Kaido, M.3    Ahlquist, P.4
  • 7
    • 0018877893 scopus 로고
    • Specific labeling of 3′ termini of RNA with T4 RNA ligase
    • England, T.E., Bruce, A.G., and Uhlenbeck, O.C. (1980). Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol. 65, 65-74.
    • (1980) Methods Enzymol. , vol.65 , pp. 65-74
    • England, T.E.1    Bruce, A.G.2    Uhlenbeck, O.C.3
  • 8
    • 0022340978 scopus 로고
    • Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product
    • Evan, G.I., Lewis, G.K., Ramsay, G., and Bishop, J.M. (1985). Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product. Mol. Cell. Biol. 5, 3610-3616.
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 3610-3616
    • Evan, G.I.1    Lewis, G.K.2    Ramsay, G.3    Bishop, J.M.4
  • 9
    • 0028244868 scopus 로고
    • Isolation of S. cerevisiae snRNPs: Comparison of U1 and U4/U6.U5 to their human counterparts
    • Fabrizio, P., Esser, S., Kastner, B., and Luhrmann, R. (1994). Isolation of S. cerevisiae snRNPs: comparison of U1 and U4/U6.U5 to their human counterparts. Science 264, 261-265.
    • (1994) Science , vol.264 , pp. 261-265
    • Fabrizio, P.1    Esser, S.2    Kastner, B.3    Luhrmann, R.4
  • 10
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot, P., Bortolin, M.L., and Kiss, T. (1997). Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89, 799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 11
    • 0034741815 scopus 로고    scopus 로고
    • The yeast cytoplasmic LsmI/Pat1p complex protects mRNA 3′ termini from partial degradation
    • He, W., and Parker, R. (2001). The yeast cytoplasmic LsmI/Pat1p complex protects mRNA 3′ termini from partial degradation. Genetics 158, 1445-1455.
    • (2001) Genetics , vol.158 , pp. 1445-1455
    • He, W.1    Parker, R.2
  • 12
    • 0036909093 scopus 로고    scopus 로고
    • The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrn1 in distinct cytoplasmic foci
    • Ingelfinger, D., Arndt-Jovin, D.J., Luhrmann, R., and Achsel, T. (2002). The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrn1 in distinct cytoplasmic foci. RNA 8, 1489-1501.
    • (2002) RNA , vol.8 , pp. 1489-1501
    • Ingelfinger, D.1    Arndt-Jovin, D.J.2    Luhrmann, R.3    Achsel, T.4
  • 13
    • 0035898634 scopus 로고    scopus 로고
    • Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
    • Kiss, T. (2001). Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20, 3617-3622.
    • (2001) EMBO J. , vol.20 , pp. 3617-3622
    • Kiss, T.1
  • 14
    • 0032775010 scopus 로고    scopus 로고
    • Epitope tagging of yeast genes using a PCR-based strategy: More tags and improved practical routines
    • Knop, M., Siegers, K., Pereira, G., Zachariae, W., Winsor, B., Nasmyth, K., and Schiebel, E. (1999). Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines. Yeast 15, 963-972.
    • (1999) Yeast , vol.15 , pp. 963-972
    • Knop, M.1    Siegers, K.2    Pereira, G.3    Zachariae, W.4    Winsor, B.5    Nasmyth, K.6    Schiebel, E.7
  • 15
    • 0037462660 scopus 로고    scopus 로고
    • Lsm Proteins are required for normal processing and stability of ribosomal RNAs
    • Kufel, J., Allmang, C., Petfalski, E., Beggs, J., and Tollervey, D. (2003a). Lsm Proteins are required for normal processing and stability of ribosomal RNAs. J. Biol. Chem. 278, 2147-2156.
    • (2003) J. Biol. Chem. , vol.278 , pp. 2147-2156
    • Kufel, J.1    Allmang, C.2    Petfalski, E.3    Beggs, J.4    Tollervey, D.5
  • 17
    • 0036288630 scopus 로고    scopus 로고
    • Lsm proteins are required for normal processing of pre-tRNAs and their efficient association with La homologous protein Lhp1p
    • Kufel, J., Allmang, C., Verdone, L., Beggs, J.D., and Tollervey, D. (2002). Lsm proteins are required for normal processing of pre-tRNAs and their efficient association with La homologous protein Lhp1p. Mol. Cell. Biol. 22, 5248-5256.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 5248-5256
    • Kufel, J.1    Allmang, C.2    Verdone, L.3    Beggs, J.D.4    Tollervey, D.5
  • 18
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M.S., McKenzie III, A., Demarini, D.J., Shah, N.G., Wach, A., Brachaat, A., Philippsen, P., and Pringle, J.R. (1998). Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14, 953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachaat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 19
    • 0026565203 scopus 로고
    • Cyclic 2′,3′ phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNA's
    • Lund, E., and Dahlberg, J.E. (1992). Cyclic 2′,3′ phosphates and nontemplated nucleotides at the 3′ end of spliceosomal U6 small nuclear RNA's. Science 255, 327-330.
    • (1992) Science , vol.255 , pp. 327-330
    • Lund, E.1    Dahlberg, J.E.2
  • 21
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. (1999). Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 22
    • 0033517098 scopus 로고    scopus 로고
    • Characterization of Sm-like proteins in yeast and their association with U6 snRNA
    • Mayes, A.E., Verdone, L., Legrain, P., and Beggs, J.D. (1999). Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J. 18, 4321-4331.
    • (1999) EMBO J. , vol.18 , pp. 4321-4331
    • Mayes, A.E.1    Verdone, L.2    Legrain, P.3    Beggs, J.D.4
  • 24
    • 0028171313 scopus 로고
    • A possible role for the 60 kd Ro autoantigen in a discard pathway for defective 5S ribosomal RNA precursors
    • O'Brien, C.A., and Wolin, S.L. (1994). A possible role for the 60 kd Ro autoantigen in a discard pathway for defective 5S ribosomal RNA precursors. Genes Dev. 8, 2891-2903.
    • (1994) Genes Dev. , vol.8 , pp. 2891-2903
    • O'Brien, C.A.1    Wolin, S.L.2
  • 25
    • 0035022015 scopus 로고    scopus 로고
    • Multiple functional interactions between components of the Lsm2-Lsm8 complex, U6 snRNA, and the yeast La protein
    • Pannone, B.K., Kim, S.D., Noe, D.A., and Wolin, S.L. (2001). Multiple functional interactions between components of the Lsm2-Lsm8 complex, U6 snRNA, and the yeast La protein. Genetics 158, 187-196.
    • (2001) Genetics , vol.158 , pp. 187-196
    • Pannone, B.K.1    Kim, S.D.2    Noe, D.A.3    Wolin, S.L.4
  • 26
    • 0032535451 scopus 로고    scopus 로고
    • A role for the yeast La protein in U6 snRNP assembly: Evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts
    • Pannone, B.K., Xue, D., and Wolin, S.L. (1998). A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts. EMBO J. 17, 7442-7453.
    • (1998) EMBO J. , vol.17 , pp. 7442-7453
    • Pannone, B.K.1    Xue, D.2    Wolin, S.L.3
  • 27
    • 0141818102 scopus 로고    scopus 로고
    • Unique Sm core structure of U7 snRNPs: Assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing
    • Pillai, R.S., Grimmler, M., Meister, G., Will, C.L., Luhrmann, R., Fischer, U., and Schumperli, D. (2003). Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes Dev. 17, 2321-2333.
    • (2003) Genes Dev. , vol.17 , pp. 2321-2333
    • Pillai, R.S.1    Grimmler, M.2    Meister, G.3    Will, C.L.4    Luhrmann, R.5    Fischer, U.6    Schumperli, D.7
  • 28
    • 0035477247 scopus 로고    scopus 로고
    • Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein
    • Pillai, R.S., Will, C.L., Luhrmann, R., Schumperli, D., and Muller, B. (2001). Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. EMBO J. 20, 5470-5479.
    • (2001) EMBO J. , vol.20 , pp. 5470-5479
    • Pillai, R.S.1    Will, C.L.2    Luhrmann, R.3    Schumperli, D.4    Muller, B.5
  • 29
    • 0036849242 scopus 로고    scopus 로고
    • A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation
    • Rader, S.D., and Guthrie, C. (2002). A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation. RNA 8, 1378-1392.
    • (2002) RNA , vol.8 , pp. 1378-1392
    • Rader, S.D.1    Guthrie, C.2
  • 30
    • 0033564627 scopus 로고    scopus 로고
    • Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
    • Salgado-Garrido, J., Bragado-Nilsson, E., Kandels-Lewis, S., and Seraphin, B. (1999). Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J. 18, 3451-3462.
    • (1999) EMBO J. , vol.18 , pp. 3451-3462
    • Salgado-Garrido, J.1    Bragado-Nilsson, E.2    Kandels-Lewis, S.3    Seraphin, B.4
  • 31
    • 0028841139 scopus 로고
    • Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae
    • Schneider, B.L., Seufert, W., Steiner, B., Yang, Q.H., and Futcher, A.B. (1995). Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae. Yeast 11, 1265-1274.
    • (1995) Yeast , vol.11 , pp. 1265-1274
    • Schneider, B.L.1    Seufert, W.2    Steiner, B.3    Yang, Q.H.4    Futcher, A.B.5
  • 32
    • 0033539171 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae telomerase is an Sm small nuclear ribonucleoprotein particle
    • Seto, A.G., Zaug, A.J., Sobel, S.G., Wolin, S.L., and Cech, T.R. (1999). Saccharomyces cerevisiae telomerase is an Sm small nuclear ribonucleoprotein particle. Nature 401, 177-180.
    • (1999) Nature , vol.401 , pp. 177-180
    • Seto, A.G.1    Zaug, A.J.2    Sobel, S.G.3    Wolin, S.L.4    Cech, T.R.5
  • 33
    • 0025978949 scopus 로고
    • Getting started with yeast
    • Sherman, F. (1991). Getting started with yeast. Methods Enzymol. 194, 3-21.
    • (1991) Methods Enzymol. , vol.194 , pp. 3-21
    • Sherman, F.1
  • 34
    • 0037968357 scopus 로고    scopus 로고
    • Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
    • Sheth, U., and Parker, R. (2003). Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300, 805-808.
    • (2003) Science , vol.300 , pp. 805-808
    • Sheth, U.1    Parker, R.2
  • 36
    • 0034732089 scopus 로고    scopus 로고
    • Yeast Sm-like proteins function in mRNA decapping and decay
    • Tharun, S., He, W., Mayes, A.E., Lennertz, P., Beggs, J.D., and Parker, R. (2000). Yeast Sm-like proteins function in mRNA decapping and decay. Nature 404, 515-518.
    • (2000) Nature , vol.404 , pp. 515-518
    • Tharun, S.1    He, W.2    Mayes, A.E.3    Lennertz, P.4    Beggs, J.D.5    Parker, R.6
  • 37
    • 0023661309 scopus 로고
    • A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA
    • Tollervey, D. (1987). A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J. 6, 4169-4175.
    • (1987) EMBO J. , vol.6 , pp. 4169-4175
    • Tollervey, D.1
  • 38
    • 0036261559 scopus 로고    scopus 로고
    • Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence
    • Tomasevic, N., and Peculis, B.A. (2002). Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence. Mol. Cell. Biol. 22, 4101-4112.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 4101-4112
    • Tomasevic, N.1    Peculis, B.A.2
  • 39
    • 0032755703 scopus 로고    scopus 로고
    • Characterization of U6 snRNA-protein interactions
    • Vidal, V.P., Verdone, L., Mayes, A.E., and Beggs, J.D. (1999). Characterization of U6 snRNA-protein interactions. RNA 5, 1470-1481.
    • (1999) RNA , vol.5 , pp. 1470-1481
    • Vidal, V.P.1    Verdone, L.2    Mayes, A.E.3    Beggs, J.D.4
  • 40
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure
    • Watkins, N.J., Gottschalk, A., Neubauer, G., Kastner, B., Fabrizio, P., Mann, M., and Luhrmann, R. (1998). Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA 4, 1549-1568.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Watkins, N.J.1    Gottschalk, A.2    Neubauer, G.3    Kastner, B.4    Fabrizio, P.5    Mann, M.6    Luhrmann, R.7
  • 41
    • 0035370526 scopus 로고    scopus 로고
    • Spliceosomal UsnRNP biogenesis, structure and function
    • Will, C.L., and Luhrmann, R. (2001). Spliceosomal UsnRNP biogenesis, structure and function. Curr. Opin. Cell Biol. 13, 290-301.
    • (2001) Curr. Opin. Cell Biol. , vol.13 , pp. 290-301
    • Will, C.L.1    Luhrmann, R.2
  • 43
    • 0034599747 scopus 로고    scopus 로고
    • U snRNP assembly in yeast involves the La protein
    • Xue, D., Rubinson, D.A., Pannone, B.K., Yoo, C.J., and Wolin, S.L. (2000). U snRNP assembly in yeast involves the La protein. EMBO J. 19, 1650-1660.
    • (2000) EMBO J. , vol.19 , pp. 1650-1660
    • Xue, D.1    Rubinson, D.A.2    Pannone, B.K.3    Yoo, C.J.4    Wolin, S.L.5
  • 44
    • 0037159511 scopus 로고    scopus 로고
    • The Shq1p-Naf1p complex is required for box H/ACA small nucleolar ribonucleo-protein particle biogenesis
    • Yang, P.K., Rotondo, G., Porras, T., Legrain, P., and Chanfreau, G. (2002). The Shq1p-Naf1p complex is required for box H/ACA small nucleolar ribonucleo-protein particle biogenesis. J. Biol. Chem. 277, 45235-45242.
    • (2002) J. Biol. Chem. , vol.277 , pp. 45235-45242
    • Yang, P.K.1    Rotondo, G.2    Porras, T.3    Legrain, P.4    Chanfreau, G.5
  • 45
    • 0038268551 scopus 로고    scopus 로고
    • Genetic interaction between a chaperone of small nucleolar ribonucleoprotein particles and cytosolic serine hydroxymethyl-transferase
    • Yang, Y., and Meier, U.T. (2003). Genetic interaction between a chaperone of small nucleolar ribonucleoprotein particles and cytosolic serine hydroxymethyl-transferase. J. Biol. Chem. 278, 23553-23560.
    • (2003) J. Biol. Chem. , vol.278 , pp. 23553-23560
    • Yang, Y.1    Meier, U.T.2
  • 46
    • 0024828050 scopus 로고
    • Synthesis of long, capped transcripts in vitro by SP6 and T7 RNA polymerases
    • Yisraeli, J.K., and Melton, D.A. (1989). Synthesis of long, capped transcripts in vitro by SP6 and T7 RNA polymerases. Methods Enzymol. 180, 42-50.
    • (1989) Methods Enzymol. , vol.180 , pp. 42-50
    • Yisraeli, J.K.1    Melton, D.A.2
  • 47
    • 0030904723 scopus 로고    scopus 로고
    • The yeast La protein is required for the 3′ endonucleolytic cleavage that matures tRNA precursors
    • Yoo, C.J., and Wolin, S.L. (1997). The yeast La protein is required for the 3′ endonucleolytic cleavage that matures tRNA precursors. Cell 89, 393-402.
    • (1997) Cell , vol.89 , pp. 393-402
    • Yoo, C.J.1    Wolin, S.L.2
  • 48
    • 0036163624 scopus 로고    scopus 로고
    • The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
    • Zhang, A., Wassarman, K.M., Ortega, J., Steven, A.C., and Storz, G. (2002). The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs. Mol Cell 9, 11-22.
    • (2002) Mol Cell , vol.9 , pp. 11-22
    • Zhang, A.1    Wassarman, K.M.2    Ortega, J.3    Steven, A.C.4    Storz, G.5


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