-
1
-
-
0022254333
-
Nickel-containing hydrogenase isoenzymes from anaerobically grown Escherichia coli K-12
-
Ballantine, S. P., and D. H. Boxer. 1985. Nickel-containing hydrogenase isoenzymes from anaerobically grown Escherichia coli K-12. J. Bacteriol. 163:454-459.
-
(1985)
J. Bacteriol.
, vol.163
, pp. 454-459
-
-
Ballantine, S.P.1
Boxer, D.H.2
-
2
-
-
0024713468
-
Nitrate reductase of Escherichia coli: Completion of the nucleotide sequence of the nar operon and reassessment of the role of the alpha and beta subunits in iron binding and electron transfer
-
Blasco, F., C. Iohbi, G. Giordano, M. Chippaux, and V. Bonnefoy. 1989. Nitrate reductase of Escherichia coli: completion of the nucleotide sequence of the nar operon and reassessment of the role of the alpha and beta subunits in iron binding and electron transfer. Mol. Gen. Genet. 218:249-256.
-
(1989)
Mol. Gen. Genet.
, vol.218
, pp. 249-256
-
-
Blasco, F.1
Iohbi, C.2
Giordano, G.3
Chippaux, M.4
Bonnefoy, V.5
-
3
-
-
0036671203
-
Metal insertion into NiFe-hydrogenases
-
Blokesch, M., A. Paschos, E. Theodoratou, A. Bauer, M. Hube, S. Huth, and A. Bock. 2002. Metal insertion into NiFe-hydrogenases. Biochem. Soc. Trans. 30:674-680.
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 674-680
-
-
Blokesch, M.1
Paschos, A.2
Theodoratou, E.3
Bauer, A.4
Hube, M.5
Huth, S.6
Bock, A.7
-
4
-
-
3543072246
-
Metal-selective DNA-binding response of Escherichia coli NikR
-
Bloom, S. L., and D. B. Zambie. 2004. Metal-selective DNA-binding response of Escherichia coli NikR. Biochemistry 43:10029-10038.
-
(2004)
Biochemistry
, vol.43
, pp. 10029-10038
-
-
Bloom, S.L.1
Zambie, D.B.2
-
5
-
-
0027980255
-
Anaerobic regulation of the hydrogenase 1 (hya) operon of Escherichia coli
-
Brøndsted, L., and T. Atlung. 1994. Anaerobic regulation of the hydrogenase 1 (hya) operon of Escherichia coli. J. Bacteriol. 176:5423-5428.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5423-5428
-
-
Brøndsted, L.1
Atlung, T.2
-
6
-
-
0742333984
-
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli
-
Bulyk, M. L., A. M. McGuire, N. Masuda, and G. M. Church. 2004. A motif co-occurrence approach for genome-wide prediction of transcription-factor- binding sites in Escherichia coli. Genome Res. 14:201-208.
-
(2004)
Genome Res.
, vol.14
, pp. 201-208
-
-
Bulyk, M.L.1
McGuire, A.M.2
Masuda, N.3
Church, G.M.4
-
7
-
-
0037315184
-
Nickel coordination is regulated by the DNA-bound state of NikR
-
Carrington, P. E., P. T. Olivers, F. Al-Mjeni, R. T. Sauer, and M. J. Maroney. 2003. Nickel coordination is regulated by the DNA-bound state of NikR. Nat. Struct. Biol. 10:126-130.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 126-130
-
-
Carrington, P.E.1
Olivers, P.T.2
Al-Mjeni, F.3
Sauer, R.T.4
Maroney, M.J.5
-
8
-
-
0036774881
-
NikR repressor: High-affinity nickel binding to the C-terminal domain regulates binding to operator DNA
-
Chivers, P. T., and R. T. Sauer. 2002. NikR repressor: high-affinity nickel binding to the C-terminal domain regulates binding to operator DNA. Chem. Biol. 9:1141-1148.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1141-1148
-
-
Chivers, P.T.1
Sauer, R.T.2
-
9
-
-
0034733505
-
Regulation of high affinity nickel uptake in bacteria. Ni2+-depcndcnt interaction of NikR with wild-type and mutant operator sites
-
Chivers, P. T., and R. T. Sauer. 2000. Regulation of high affinity nickel uptake in bacteria. Ni2+-depcndcnt interaction of NikR with wild-type and mutant operator sites. J. Biol. Chem. 275:19735-19741.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19735-19741
-
-
Chivers, P.T.1
Sauer, R.T.2
-
10
-
-
0026056114
-
Anaerobically expressed Escherichia coli genes identified by operon fusion techniques
-
Choe, M., and W. S. Reznikoff. 1991. Anaerobically expressed Escherichia coli genes identified by operon fusion techniques. J. Bacteriol. 173:6139-6146.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6139-6146
-
-
Choe, M.1
Reznikoff, W.S.2
-
11
-
-
0032537553
-
Overproduction and characterization of a dimeric nonzinc glyoxalase I from Escherichia coli: Evidence for optimal activation by nickel ions
-
Clugston, S. L., J. F. Barnard, R. Kinach, D. Miedema, R. Ruman, E. Daub, and J. F. Honek. 1998. Overproduction and characterization of a dimeric nonzinc glyoxalase I from Escherichia coli: evidence for optimal activation by nickel ions. Biochemistry 37:8754-8763.
-
(1998)
Biochemistry
, vol.37
, pp. 8754-8763
-
-
Clugston, S.L.1
Barnard, J.F.2
Kinach, R.3
Miedema, D.4
Ruman, R.5
Daub, E.6
Honek, J.F.7
-
12
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K., and B. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.1
Wanner, B.2
-
13
-
-
0034631704
-
XAS investigation of the nickel active site structure in Escherichia coli glyoxalase I
-
Davidson, G., S. L. Clugston, J. F. Honek, and M. J. Maroney. 2000. XAS investigation of the nickel active site structure in Escherichia coli glyoxalase I. Inorg. Chem. 39:2962-2963.
-
(2000)
Inorg. Chem.
, vol.39
, pp. 2962-2963
-
-
Davidson, G.1
Clugston, S.L.2
Honek, J.F.3
Maroney, M.J.4
-
14
-
-
0034108232
-
Regulation of biological nitrogen fixation
-
Halhleih, C. M., and P. W. Ludden. 2000. Regulation of biological nitrogen fixation. J. Nutr. 130:1081-1084.
-
(2000)
J. Nutr.
, vol.130
, pp. 1081-1084
-
-
Halhleih, C.M.1
Ludden, P.W.2
-
15
-
-
0034254431
-
Determination of the structure of Escherichia coli glyoxalase I suggests a structural basis for differential metal activation
-
He, M. M., S. L. Clugston, J. F. Honek, and B. W. Matthews. 2000. Determination of the structure of Escherichia coli glyoxalase I suggests a structural basis for differential metal activation. Biochemistry 39:8719-8727.
-
(2000)
Biochemistry
, vol.39
, pp. 8719-8727
-
-
He, M.M.1
Clugston, S.L.2
Honek, J.F.3
Matthews, B.W.4
-
16
-
-
0030014740
-
High substrate specificity and induction characteristics of trimethylamine-N-oxide reductase of Escherichia coli
-
Iobbi-Nivol, C., J. Pommier, J. Simala-Grant, V. Mejean, and G. Giordano. 1996. High substrate specificity and induction characteristics of trimethylamine-N-oxide reductase of Escherichia coli. Biochim. Biophys. Acta 1294:77-82.
-
(1996)
Biochim. Biophys. Acta
, vol.1294
, pp. 77-82
-
-
Iobbi-Nivol, C.1
Pommier, J.2
Simala-Grant, J.3
Mejean, V.4
Giordano, G.5
-
17
-
-
0032835259
-
Response of hya expression to external pH in Escherichia coli
-
King, P. W., and A. E. Przyhyla. 1999. Response of hya expression to external pH in Escherichia coli. J. Bacteriol. 181:5250-5256.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5250-5256
-
-
King, P.W.1
Przyhyla, A.E.2
-
18
-
-
1542304722
-
Biosynthesis of metal sites
-
Kuchar, J., and R. P. Hausinger. 2004. Biosynthesis of metal sites. Chem. Rev. 104:509-525.
-
(2004)
Chem. Rev.
, vol.104
, pp. 509-525
-
-
Kuchar, J.1
Hausinger, R.P.2
-
19
-
-
0037015025
-
Identification of the binding sites of regulatory proteins in bacterial genomes
-
Li, H., V. Rhodius, C. Gross, and E. D. Siggia. 2002. Identification of the binding sites of regulatory proteins in bacterial genomes. Proc. Natl. Acad. Sci. USA 99:11772-11777.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11772-11777
-
-
Li, H.1
Rhodius, V.2
Gross, C.3
Siggia, E.D.4
-
20
-
-
0031963196
-
The role of glyoxalase I in the detoxification of methylglyoxal and in the activation of the KefB K+ efflux system in Escherichia coli
-
MacLean, M. J., L. S. Ness, G. P. Ferguson, and I. R. Booth. 1998. The role of glyoxalase I in the detoxification of methylglyoxal and in the activation of the KefB K+ efflux system in Escherichia coli. Mol. Microbiol. 27:563-571.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 563-571
-
-
MacLean, M.J.1
Ness, L.S.2
Ferguson, G.P.3
Booth, I.R.4
-
21
-
-
0035876430
-
Fidelity of metal insertion into hydrogenases
-
Magalon, A., M. Blokesch, E. Zehelein, and A. Bock. 2001. Fidelity of metal insertion into hydrogenases. FEBS Lett. 499:73-76.
-
(2001)
FEBS Lett.
, vol.499
, pp. 73-76
-
-
Magalon, A.1
Blokesch, M.2
Zehelein, E.3
Bock, A.4
-
22
-
-
0036786677
-
Dimerization allows DNA target site recognition by the NarL response regulator
-
Maris, A. E., M. R. Sawaya, M. Kaczor-Grzeskowiak, M. R. Jarvis, S. M. Bearson, M. L. Kopka, I. Schroder, R. P. Gunsalus, and R. E. Dickerson. 2002. Dimerization allows DNA target site recognition by the NarL response regulator. Nat. Struct. Biol. 9:771-778.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 771-778
-
-
Maris, A.E.1
Sawaya, M.R.2
Kaczor-Grzeskowiak, M.3
Jarvis, M.R.4
Bearson, S.M.5
Kopka, M.L.6
Schroder, I.7
Gunsalus, R.P.8
Dickerson, R.E.9
-
23
-
-
0033918228
-
Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes
-
McGuire, A. M., J. D. Hughes, and G. M. Church. 2000. Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes. Genome Res. 10:744-757.
-
(2000)
Genome Res.
, vol.10
, pp. 744-757
-
-
McGuire, A.M.1
Hughes, J.D.2
Church, G.M.3
-
24
-
-
0027482679
-
The nik operon of Escheriehia coli encodes a periplasmic binding-protein-dependent transport system for nickel
-
Navarro, C., L. F. Wu, and M. A. Mandrand-Berthelot. 1993. The nik operon of Escheriehia coli encodes a periplasmic binding-protein-dependent transport system for nickel. Mol. Microbiol. 9:1181-1191.
-
(1993)
Mol. Microbiol.
, vol.9
, pp. 1181-1191
-
-
Navarro, C.1
Wu, L.F.2
Mandrand-Berthelot, M.A.3
-
25
-
-
0037195612
-
Molecular hydrogen as an energy source for Helicobacter pylori
-
Olson, J. W., and R. J. Maier. 2002. Molecular hydrogen as an energy source for Helicobacter pylori. Science 298:1788-1790.
-
(2002)
Science
, vol.298
, pp. 1788-1790
-
-
Olson, J.W.1
Maier, R.J.2
-
26
-
-
0035997354
-
Great metalloclusters in enzymology
-
Rees, D. C. 2002. Great metalloclusters in enzymology. Annu. Rev. Biochem. 71:221-246.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 221-246
-
-
Rees, D.C.1
-
27
-
-
0032873183
-
Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli
-
Richard, D. J., G. Sawers, F. Sargent, L. McWalter, and D. H. Boxer. 1999. Transcriptional regulation in response to oxygen and nitrate of the operons encoding the [NiFe] hydrogenases 1 and 2 of Escherichia coli. Microbiology 145:2903-2912.
-
(1999)
Microbiology
, vol.145
, pp. 2903-2912
-
-
Richard, D.J.1
Sawers, G.2
Sargent, F.3
McWalter, L.4
Boxer, D.H.5
-
28
-
-
0025930768
-
Mechanism of regulation of the formate-hydrogenlyase pathway by oxygen, nitrate, and pH: Definition of the formate regulon
-
Rossmann, R., G. Sawers, and A. Bock. 1991. Mechanism of regulation of the formate-hydrogenlyase pathway by oxygen, nitrate, and pH: definition of the formate regulon. Mol. Microbiol. 5:2807-2814.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 2807-2814
-
-
Rossmann, R.1
Sawers, G.2
Bock, A.3
-
29
-
-
0022376555
-
Differential expression of hydrogenase isoenzymes in Escherichia coli K-12: Evidence for a third isoenzyme
-
Sawers, R. G., S. P. Ballantine, and D. H. Boxer. 1985. Differential expression of hydrogenase isoenzymes in Escherichia coli K-12: evidence for a third isoenzyme. J. Bacteriol. 164:1324-1331.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 1324-1331
-
-
Sawers, R.G.1
Ballantine, S.P.2
Boxer, D.H.3
-
30
-
-
0347285390
-
Expression and regulation of a silent operon, hyf, coding for hydrogenase 4 isoenzyme in Escherichia coli
-
Self, W. T., A. Hasona, and K. T. Shanmugam. 2004. Expression and regulation of a silent operon, hyf, coding for hydrogenase 4 isoenzyme in Escherichia coli. J. Bacteriol. 186:580-587.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 580-587
-
-
Self, W.T.1
Hasona, A.2
Shanmugam, K.T.3
-
31
-
-
0026059559
-
Magnesium transport in Salmonella typhimurium. Regulation of mgtA and mgtB expression
-
Snavely, M. D., S. A. Gravina, T. T. Cheung, C. G. Miller, and M. E. Maguire. 1991. Magnesium transport in Salmonella typhimurium. Regulation of mgtA and mgtB expression. J. Biol. Chew. 266:824-829.
-
(1991)
J. Biol. Chew.
, vol.266
, pp. 824-829
-
-
Snavely, M.D.1
Gravina, S.A.2
Cheung, T.T.3
Miller, C.G.4
Maguire, M.E.5
-
32
-
-
0015958425
-
Proteins of the inner membrane of Escherichia coli: Changes in composition associated with anaerobic growth and fumarate reductase amber mutation
-
Spencer, M. E., and J. R. Guest. 1974. Proteins of the inner membrane of Escherichia coli: changes in composition associated with anaerobic growth and fumarate reductase amber mutation. J. Bacteriol. 117:954-959.
-
(1974)
J. Bacteriol.
, vol.117
, pp. 954-959
-
-
Spencer, M.E.1
Guest, J.R.2
-
33
-
-
0037326468
-
Biochemical Society Special Lecture. Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria
-
Stewart, V. 2003. Biochemical Society Special Lecture. Nitrate- and nitrite-responsive sensors NarX and NarQ of proteobacteria. Biochem. Soc. Trans. 31:1-10.
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 1-10
-
-
Stewart, V.1
-
34
-
-
0024094677
-
Influence ol nar (nitrate reductase) genes on nitrate inhibition of formate-hydrogen lyase and fumarate reductase gene expression in Escherichia coli K-12
-
Stewart, V., and B. L. Berg. 1988. Influence ol nar (nitrate reductase) genes on nitrate inhibition of formate-hydrogen lyase and fumarate reductase gene expression in Escherichia coli K-12. J. Bacteriol. 170:4437-4444.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 4437-4444
-
-
Stewart, V.1
Berg, B.L.2
-
35
-
-
9444245016
-
Distinct classes of glyoxalase I: Metal specificity of the Yersinia pestis, Pseudomonas aeruginosa and Neisseria meningitidis enzymes
-
Sukdeo, N., S. L. Clugston, E. Daub, and J. F. Honek. 2004. Distinct classes of glyoxalase I: metal specificity of the Yersinia pestis, Pseudomonas aeruginosa and Neisseria meningitidis enzymes. Biochem. J. 384:111-117.
-
(2004)
Biochem. J.
, vol.384
, pp. 111-117
-
-
Sukdeo, N.1
Clugston, S.L.2
Daub, E.3
Honek, J.F.4
-
36
-
-
0031685510
-
Biochemistry of methanogenesis: A tribute to Marjory Stephenson
-
Thauer, R. K. 1998. Biochemistry of methanogenesis: a tribute to Marjory Stephenson. Microbiology 144:2377-2406.
-
(1998)
Microbiology
, vol.144
, pp. 2377-2406
-
-
Thauer, R.K.1
-
37
-
-
0028064605
-
A urease-negative mutant of Helicobacter pylori constructed by allelic exchange mutagenesis lacks the ability to colonize the nude mouse stomach
-
Tsuda, M., M. Karita, M. G. Morshed, K. Okita, and T. Nakazawa. 1994. A urease-negative mutant of Helicobacter pylori constructed by allelic exchange mutagenesis lacks the ability to colonize the nude mouse stomach. Infect. Immun. 62:3586-3589.
-
(1994)
Infect. Immun.
, vol.62
, pp. 3586-3589
-
-
Tsuda, M.1
Karita, M.2
Morshed, M.G.3
Okita, K.4
Nakazawa, T.5
-
38
-
-
0030738589
-
Alternative respiratory pathways of Escherichia coli: Energetics and transcriptional regulation in response to electron acceptors
-
Unden, G., and J. Bongaerts. 1997. Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim. Biophys. Acta 1320:217-234.
-
(1997)
Biochim. Biophys. Acta
, vol.1320
, pp. 217-234
-
-
Unden, G.1
Bongaerts, J.2
-
39
-
-
0242695597
-
The active site and catalytic mechanism of NiFe hydrogenases
-
Volheda, A., and J. C. Fontecilla-Camps. 2003. The active site and catalytic mechanism of NiFe hydrogenases. Dalton Trans. 2003:4030-4038.
-
(2003)
Dalton Trans.
, vol.2003
, pp. 4030-4038
-
-
Volheda, A.1
Fontecilla-Camps, J.C.2
-
40
-
-
0032835980
-
The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite
-
Wang, H., C.-P. Tseng, and R. P. Gunsalus. 1999. The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite. J. Bacteriol. 181:5303-5308.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5303-5308
-
-
Wang, H.1
Tseng, C.-P.2
Gunsalus, R.P.3
-
41
-
-
3543056937
-
Selectivity of metal binding and metal-induced stability of Escherichia coli NikR
-
Wang, S. C., A. V. Dias, S. L. Bloom, and D. B. Zambie. 2004. Selectivity of metal binding and metal-induced stability of Escherichia coli NikR. Biochemistry 43:10018-10028.
-
(2004)
Biochemistry
, vol.43
, pp. 10018-10028
-
-
Wang, S.C.1
Dias, A.V.2
Bloom, S.L.3
Zambie, D.B.4
-
42
-
-
0023986420
-
Purification and properties of Escherichia coli dimethyl sulfoxide reductase, an iron-sulfur molybdoenzymc with broad substrate spccificity
-
Weiner, J. H., D. P. MacIsaac, R. E. Bishop, and P. T. Bilous. 1988. Purification and properties of Escherichia coli dimethyl sulfoxide reductase, an iron-sulfur molybdoenzymc with broad substrate spccificity. J. Bacteriol. 170:1505-1510.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 1505-1510
-
-
Weiner, J.H.1
MacIsaac, D.P.2
Bishop, R.E.3
Bilous, P.T.4
-
43
-
-
0022639247
-
Genetic and physiological characterization of new Escherichia coli mutants impaired in hydrogenase activity
-
Wu, L. F., and M. A. Mandrand-Berthelot. 1986. Genetic and physiological characterization of new Escherichia coli mutants impaired in hydrogenase activity. Biochimie 68:167-179.
-
(1986)
Biochimie
, vol.68
, pp. 167-179
-
-
Wu, L.F.1
Mandrand-Berthelot, M.A.2
-
44
-
-
0024836127
-
Nickel deficiency gives rise to the defective hydrogenase phenotype of hydC and fnr muuinis in Escherichia coli
-
Wu, L. F., M. A. Mandrand-Berthelot, R. Waugh, C. J. Edmonds, S. E. Holt, and D. H. Boxer. 1989. Nickel deficiency gives rise to the defective hydrogenase phenotype of hydC and fnr muuinis in Escherichia coli. Mol. Microbiol. 3:1709-1718.
-
(1989)
Mol. Microbiol.
, vol.3
, pp. 1709-1718
-
-
Wu, L.F.1
Mandrand-Berthelot, M.A.2
Waugh, R.3
Edmonds, C.J.4
Holt, S.E.5
Boxer, D.H.6
-
45
-
-
0025984451
-
The hydC region contains a multi-cistronic operon (nik) involved in nickel transport in Escherichia coli
-
Wu, L. F., C. Navarro, and M. A. Mandrand-Berthelot. 1991. The hydC region contains a multi-cistronic operon (nik) involved in nickel transport in Escherichia coli. Gene 107:37-42.
-
(1991)
Gene
, vol.107
, pp. 37-42
-
-
Wu, L.F.1
Navarro, C.2
Mandrand-Berthelot, M.A.3
-
46
-
-
0043032929
-
Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems
-
Zhou, L., X.-H. Lei, B. R. Bochner, and B. L. Wanner. 2003. Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems. J. Bacteriol. 185:4956-4972.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4956-4972
-
-
Zhou, L.1
Lei, X.-H.2
Bochner, B.R.3
Wanner, B.L.4
|