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Volumn 139, Issue 2, 2005, Pages 869-884

Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

(17)  Pratt, Lee H a   Liang, Chun a   Shah, Manish a   Sun, Feng a   Wang, Haiming a   Reid, St Patrick a,g   Gingle, Alan R a   Paterson, Andrew H a   Wing, Rod b,h   Dean, Ralph c,i   Klein, Robert d   Nguyen, Henry T e,j   Ma, Hong Mei a   Zhao, Xin a   Morishige, Daryl T f   Mullet, John E f   Cordonnier Pratt, Marie Michèle a  


Author keywords

[No Author keywords available]

Indexed keywords

CELLS; DROUGHT; GENES; PLANTS (BOTANY); SEED;

EID: 24744440524     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.105.066134     Document Type: Article
Times cited : (58)

References (57)
  • 2
    • 0027135403 scopus 로고
    • Homeologous relationships of rice, wheat, and maize chromosomes
    • Ahn S, Anderson J, Sorrells M, Tanksley S (1993) Homeologous relationships of rice, wheat, and maize chromosomes. Mol Gen Genet 241: 483-490
    • (1993) Mol Gen Genet , vol.241 , pp. 483-490
    • Ahn, S.1    Anderson, J.2    Sorrells, M.3    Tanksley, S.4
  • 5
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 6
    • 0037986743 scopus 로고    scopus 로고
    • Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data
    • Batley FJ, Barker G, O'Sullivan H, Edward KJ, Edwards D (2003) Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data. Plant Physiol 132: 84-91
    • (2003) Plant Physiol , vol.132 , pp. 84-91
    • Batley, F.J.1    Barker, G.2    O'Sullivan, H.3    Edward, K.J.4    Edwards, D.5
  • 7
    • 0034834248 scopus 로고    scopus 로고
    • Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data
    • Beaudoing E, Gautheret D (2001) Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. Genome Res 11: 1520-1526
    • (2001) Genome Res , vol.11 , pp. 1520-1526
    • Beaudoing, E.1    Gautheret, D.2
  • 9
    • 0030932665 scopus 로고    scopus 로고
    • The unified glass genome: Synergy in synteny
    • Bennetzen JL, Freeling M (1997) The unified glass genome: synergy in synteny. Genome Res 7: 301-306
    • (1997) Genome Res , vol.7 , pp. 301-306
    • Bennetzen, J.L.1    Freeling, M.2
  • 10
    • 12444347410 scopus 로고    scopus 로고
    • A high-density genetic recombination map of sequence-tagged sites for Sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses
    • Bowers JE, Abbey C, Anderson S, Chang C, Draye X, Hoppe AH, Jessup R, Lemke C, Lennington J, Li Z, et al (2003) A high-density genetic recombination map of sequence-tagged sites for Sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses. Genetics 165:367-386
    • (2003) Genetics , vol.165 , pp. 367-386
    • Bowers, J.E.1    Abbey, C.2    Anderson, S.3    Chang, C.4    Draye, X.5    Hoppe, A.H.6    Jessup, R.7    Lemke, C.8    Lennington, J.9    Li, Z.10
  • 12
    • 0033018816 scopus 로고    scopus 로고
    • Reliable identification of large numbers of candidate SNPs from public EST data
    • Buetow KH, Edmonson MN, Cassidy DB (1999) Reliable identification of large numbers of candidate SNPs from public EST data. Nat Genet 21: 323-325
    • (1999) Nat Genet , vol.21 , pp. 323-325
    • Buetow, K.H.1    Edmonson, M.N.2    Cassidy, D.B.3
  • 13
    • 0031955117 scopus 로고    scopus 로고
    • Alternative gene form discovery and candidate gene selection from gene indexing projects
    • Burke J, Wang H, Hide W, Davison DB (1998) Alternative gene form discovery and candidate gene selection from gene indexing projects. Genome Res 8: 276-290
    • (1998) Genome Res , vol.8 , pp. 276-290
    • Burke, J.1    Wang, H.2    Hide, W.3    Davison, D.B.4
  • 14
    • 0034886163 scopus 로고    scopus 로고
    • Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology
    • Childs KL, Klein RR, Klein PE, Morishige DT, Mullet JE (2001) Mapping genes on an integrated sorghum genetic and physical map using cDNA selection technology. Plant J 27: 243-255
    • (2001) Plant J , vol.27 , pp. 243-255
    • Childs, K.L.1    Klein, R.R.2    Klein, P.E.3    Morishige, D.T.4    Mullet, J.E.5
  • 15
    • 0028155025 scopus 로고
    • A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of sorghum chromosomes or chromosomal segments
    • Chittenden LM, Schertz KF, Lin YR, Wing RA, Paterson AH (1994) A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of sorghum chromosomes or chromosomal segments. Theor Appl Genet 87: 925-933
    • (1994) Theor Appl Genet , vol.87 , pp. 925-933
    • Chittenden, L.M.1    Schertz, K.F.2    Lin, Y.R.3    Wing, R.A.4    Paterson, A.H.5
  • 17
    • 0005790751 scopus 로고
    • Blackwell Publishing, Ames, IA
    • Doggett H (1988) Sorghum, Ed 2. Blackwell Publishing, Ames, IA
    • (1988) Sorghum, Ed 2
    • Doggett, H.1
  • 18
    • 0035099613 scopus 로고    scopus 로고
    • Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation
    • Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, et al (2001) Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation. Plant Physiol 125: 1325-1341
    • (2001) Plant Physiol , vol.125 , pp. 1325-1341
    • Draye, X.1    Lin, Y.R.2    Qian, X.Y.3    Bowers, J.E.4    Burow, G.B.5    Morrell, P.L.6    Peterson, D.G.7    Presting, G.G.8    Ren, S.X.9    Wing, R.A.10
  • 19
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred: Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred: error probabilities. Genome Res 8: 186-194
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 20
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred: Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred: accuracy assessment. Genome Res 8: 175-185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 24
    • 0032478340 scopus 로고    scopus 로고
    • Comparative genetics in the grasses
    • Gale MD, Devos KM (1998) Comparative genetics in the grasses. Proc Natl Acad Sci USA 95: 1971-1974
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1971-1974
    • Gale, M.D.1    Devos, K.M.2
  • 25
    • 0034863410 scopus 로고    scopus 로고
    • The complex structures of arabinogalactan-proteins and the journey towards understanding function
    • Gaspar Y, Johnson KL, McKenna JA, Bacic A, Schultz CJ (2001) The complex structures of arabinogalactan-proteins and the journey towards understanding function. Plant Mol Biol 47: 161-176
    • (2001) Plant Mol Biol , vol.47 , pp. 161-176
    • Gaspar, Y.1    Johnson, K.L.2    McKenna, J.A.3    Bacic, A.4    Schultz, C.J.5
  • 26
    • 0031859991 scopus 로고    scopus 로고
    • Alternate polyadenylation in human miRNAs: A large-scale analysis by EST clustering
    • Gautheret D, Poirot O, Lopez F, Audic S, Claverie J-M (1998) Alternate polyadenylation in human miRNAs: a large-scale analysis by EST clustering. Genome Res 8: 524-530
    • (1998) Genome Res , vol.8 , pp. 524-530
    • Gautheret, D.1    Poirot, O.2    Lopez, F.3    Audic, S.4    Claverie, J.-M.5
  • 27
    • 0032077954 scopus 로고    scopus 로고
    • Temporal and photoregulated expression of five tomato phytochrome genes
    • Hauser BA, Cordonnier-Pratt M-M, Pratt LH (1998) Temporal and photoregulated expression of five tomato phytochrome genes. Plant J 14: 431-439
    • (1998) Plant J , vol.14 , pp. 431-439
    • Hauser, B.A.1    Cordonnier-Pratt, M.-M.2    Pratt, L.H.3
  • 28
    • 0025352557 scopus 로고
    • Genetic-mapping and characterization of sorghum and related crops by means of maize DNA probes
    • Hulbert SH, Richter TE, Axtell JD, Bennetzen JL (1990) Genetic-mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc Natl Acad Sci USA 87: 4251-4255
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4251-4255
    • Hulbert, S.H.1    Richter, T.E.2    Axtell, J.D.3    Bennetzen, J.L.4
  • 31
    • 0036017860 scopus 로고    scopus 로고
    • Phospholipid signaling in plant defense
    • Laxalt AM, Munnik T (2002) Phospholipid signaling in plant defense. Curr Opin Plant Biol 5: 332-338
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 332-338
    • Laxalt, A.M.1    Munnik, T.2
  • 32
    • 0033428010 scopus 로고    scopus 로고
    • A Sorghum propinquum BAC library, suitable for cloning genes associated with loss-of-function mutations during crop domestication
    • Lin YR, Zhu LH, Ren SX, Yang JS, Schertz KP, Paterson AH (1999) A Sorghum propinquum BAC library, suitable for cloning genes associated with loss-of-function mutations during crop domestication. Mol Breed 5: 511-520
    • (1999) Mol Breed , vol.5 , pp. 511-520
    • Lin, Y.R.1    Zhu, L.H.2    Ren, S.X.3    Yang, J.S.4    Schertz, K.P.5    Paterson, A.H.6
  • 33
    • 0036796369 scopus 로고    scopus 로고
    • Current methods of gene prediction, their strengths and weaknesses
    • Mathé C, Sagot M-F, Schiex T, Rouzé P (2002) Current methods of gene prediction, their strengths and weaknesses. Nucleic Acids Res 30: 4103-4117
    • (2002) Nucleic Acids Res , vol.30 , pp. 4103-4117
    • Mathé, C.1    Sagot, M.-F.2    Schiex, T.3    Rouzé, P.4
  • 34
    • 0036010769 scopus 로고    scopus 로고
    • A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP and SSR markers
    • Menz MA, Klein RR, Mullet JE, Obert JA, Unruh NC, Klein PE (2002) A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP and SSR markers. Plant Mol Biol 48: 483-499
    • (2002) Plant Mol Biol , vol.48 , pp. 483-499
    • Menz, M.A.1    Klein, R.R.2    Mullet, J.E.3    Obert, J.A.4    Unruh, N.C.5    Klein, P.E.6
  • 37
    • 0036008766 scopus 로고    scopus 로고
    • Sorghum bicolor: An important species for comparative grass genomics and a source of beneficial genes for agriculture
    • Mullet JE, Klein RR, Klein PE (2002) Sorghum bicolor: an important species for comparative grass genomics and a source of beneficial genes for agriculture. Curr Opin Plant Biol 5: 118-121
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 118-121
    • Mullet, J.E.1    Klein, R.R.2    Klein, P.E.3
  • 38
    • 0037356771 scopus 로고    scopus 로고
    • Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags
    • Ogihara Y, Mochida K, Nemoto Y, Murai K, Yamazaki Y, Shin-I T, Kohara Y (2003) Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J 33: 1001-1011
    • (2003) Plant J , vol.33 , pp. 1001-1011
    • Ogihara, Y.1    Mochida, K.2    Nemoto, Y.3    Murai, K.4    Yamazaki, Y.5    Shin-I, T.6    Kohara, Y.7
  • 41
    • 2342440523 scopus 로고    scopus 로고
    • Finding coexpressed genes in counts-based data: An improved measure with validation experiments
    • Price MN, Rieffel E (2004) Finding coexpressed genes in counts-based data: an improved measure with validation experiments. Bioinformatics 20: 945-952
    • (2004) Bioinformatics , vol.20 , pp. 945-952
    • Price, M.N.1    Rieffel, E.2
  • 44
    • 0003910579 scopus 로고    scopus 로고
    • Roe BA, Crabtree JS, Khan AS, editors. John Wiley, New York
    • Roe BA, Crabtree JS, Khan AS, editors (1996) DNA Isolation and Sequencing. John Wiley, New York
    • (1996) DNA Isolation and Sequencing
  • 48
    • 0003035304 scopus 로고    scopus 로고
    • Constructing and screening normalized cDNA libraries
    • B Birren, ED Green, S Klapholz, RM Myers, J Roskams, eds. Cold Spring Harbor Laboratory Press, New York
    • Soares MB, Bonaldo MF (1998) Constructing and screening normalized cDNA libraries. In B Birren, ED Green, S Klapholz, RM Myers, J Roskams, eds, Genome Analysis: A Laboratory Manual, Vol 2. Cold Spring Harbor Laboratory Press, New York, pp 49-157
    • (1998) Genome Analysis: A Laboratory Manual , vol.2 , pp. 49-157
    • Soares, M.B.1    Bonaldo, M.F.2
  • 49
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries
    • Stekel DJ, Git Y, Falciani F (2000) The comparison of gene expression from multiple cDNA libraries. Genome Res 10: 2055-2061
    • (2000) Genome Res , vol.10 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 50
    • 0035984046 scopus 로고    scopus 로고
    • Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing
    • Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14: 1441-1456
    • (2002) Plant Cell , vol.14 , pp. 1441-1456
    • Van Der Hoeven, R.1    Ronning, C.2    Giovannoni, J.3    Martin, G.4    Tanksley, S.5
  • 55
    • 0026437702 scopus 로고
    • Comparative genetic mapping of sorghum and maize
    • Whitkus R, Doebley J, Lee M (1992) Comparative genetic mapping of sorghum and maize. Genetics 132: 1119-1130
    • (1992) Genetics , vol.132 , pp. 1119-1130
    • Whitkus, R.1    Doebley, J.2    Lee, M.3
  • 56
    • 0028567284 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor
    • Woo SS, Jiang J, Gill BS, Paterson AH, Wing RA (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res 22: 4922-4931
    • (1994) Nucleic Acids Res , vol.22 , pp. 4922-4931
    • Woo, S.S.1    Jiang, J.2    Gill, B.S.3    Paterson, A.H.4    Wing, R.A.5


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