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Volumn 20, Issue 6, 2004, Pages 945-952

Finding coexpressed genes in counts-based data: An improved measure with validation experiments

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Indexed keywords

PROTEIN;

EID: 2342440523     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth011     Document Type: Article
Times cited : (6)

References (24)
  • 1
    • 0345051044 scopus 로고    scopus 로고
    • Normalization and subtraction: Two approaches to facilitate gene discovery
    • Bonaldo, M.F., Lennon, G. and Soares, M.B. (1996) Normalization and subtraction: two approaches to facilitate gene discovery. Genome Res., 6, 791-806.
    • (1996) Genome Res. , vol.6 , pp. 791-806
    • Bonaldo, M.F.1    Lennon, G.2    Soares, M.B.3
  • 2
    • 0034065044 scopus 로고    scopus 로고
    • The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach
    • Bortoluzzi, S., d'Alessi, F., Romualdi, C. and Danieli, G.A. (2000) The human adult skeletal muscle transcriptional profile reconstructed by a novel computational approach. Genome Res., 10, 344-349.
    • (2000) Genome Res. , vol.10 , pp. 344-349
    • Bortoluzzi, S.1    d'Alessi, F.2    Romualdi, C.3    Danieli, G.A.4
  • 3
    • 0033118182 scopus 로고    scopus 로고
    • Comparison of gene indexing databases
    • Bouck, J., Yu, W., Gibbs, R. and Worley, K. (1999) Comparison of gene indexing databases. Trends Genet., 15, 1509-162.
    • (1999) Trends Genet. , vol.15 , pp. 159-162
    • Bouck, J.1    Yu, W.2    Gibbs, R.3    Worley, K.4
  • 4
    • 0037069672 scopus 로고    scopus 로고
    • Large clusters of co-expressed genes in the Drosophila genome
    • Boutanaev, A.M., Kalmykova, A.I., Shevelyov, Y.Y. and Nurminsky, D.I. (2002) Large clusters of co-expressed genes in the Drosophila genome. Nature, 420, 666-669.
    • (2002) Nature , vol.420 , pp. 666-669
    • Boutanaev, A.M.1    Kalmykova, A.I.2    Shevelyov, Y.Y.3    Nurminsky, D.I.4
  • 5
    • 0036791003 scopus 로고    scopus 로고
    • Significance and statistical errors in the analysis of DNA microarray data
    • Brody, J.P., Williams, B.A., Wold, B.J. and Quake, S.R. (2002) Significance and statistical errors in the analysis of DNA microarray data. Proc. Natl Acad. Sci., USA, 99, 12975-12978.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12975-12978
    • Brody, J.P.1    Williams, B.A.2    Wold, B.J.3    Quake, S.R.4
  • 7
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane, C.M., Salwinski, L., Xenarios, I. and Eisenberg, D. (2002) Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol. Cell Proteom., 1, 349-356.
    • (2002) Mol. Cell Proteom. , vol.1 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 8
    • 0033642068 scopus 로고    scopus 로고
    • EST databases as multiconditional gene expression datasets
    • Ewing, R.M. and Claverie, J.-M. (2000) EST databases as multiconditional gene expression datasets. Pac. Symp. Biocomput., 5, 427-439.
    • (2000) Pac. Symp. Biocomput. , vol.5 , pp. 427-439
    • Ewing, R.M.1    Claverie, J.-M.2
  • 9
    • 0032742129 scopus 로고    scopus 로고
    • Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
    • Ewing, R.M., Kahla, A.B., Poirot, O., Lopez, F., Audic, S. and Claverie, J.M. (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res., 9, 950-959.
    • (1999) Genome Res. , vol.9 , pp. 950-959
    • Ewing, R.M.1    Kahla, A.B.2    Poirot, O.3    Lopez, F.4    Audic, S.5    Claverie, J.M.6
  • 10
    • 0036798238 scopus 로고    scopus 로고
    • Judging the quality of gene expression-based clustering methods using gene annotation
    • Gibbons, F.D. and Roth, F.P. (2002) Judging the quality of gene expression-based clustering methods using gene annotation. Genome Res., 12, 1574-1581.
    • (2002) Genome Res. , vol.12 , pp. 1574-1581
    • Gibbons, F.D.1    Roth, F.P.2
  • 12
    • 0035999981 scopus 로고    scopus 로고
    • Making sense of microarray data distributions
    • Hoyle, D.C., Rattray, M., Jupp, R. and Brass, A. (2002) Making sense of microarray data distributions. Bioinformatics, 18, 576-584.
    • (2002) Bioinformatics , vol.18 , pp. 576-584
    • Hoyle, D.C.1    Rattray, M.2    Jupp, R.3    Brass, A.4
  • 13
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • Jansen, R., Greenbaum, D. and Gerstein, M. (2002) Relating whole-genome expression data with protein-protein interactions. Genome Res., 12, 37-46.
    • (2002) Genome Res. , vol.12 , pp. 37-46
    • Jansen, R.1    Greenbaum, D.2    Gerstein, M.3
  • 15
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • Kuo, W.P., Jenssen, T.K., Butte, A.J., Ohno-Machado, L. and Kohane, I.S. (2002) Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics, 18, 405-412.
    • (2002) Bioinformatics , vol.18 , pp. 405-412
    • Kuo, W.P.1    Jenssen, T.K.2    Butte, A.J.3    Ohno-Machado, L.4    Kohane, I.S.5
  • 16
    • 0036021408 scopus 로고    scopus 로고
    • General statistics of stochastic process of gene expression in eukaryotic cells
    • Kuznetsov, V.A., Knott, G.D. and Bonner, R.F. (2002) General statistics of stochastic process of gene expression in eukaryotic cells. Genetics, 161, 1321-1332.
    • (2002) Genetics , vol.161 , pp. 1321-1332
    • Kuznetsov, V.A.1    Knott, G.D.2    Bonner, R.F.3
  • 17
    • 0042024902 scopus 로고    scopus 로고
    • Prediction of cell type-specific gene modules: Identification and initial characterization of a core set of smooth muscle-specific genes
    • Nelander, S., Mostad, P. and Lindahl, P. (2003) Prediction of cell type-specific gene modules: identification and initial characterization of a core set of smooth muscle-specific genes. Genome Res., 13, 1838-1854.
    • (2003) Genome Res. , vol.13 , pp. 1838-1854
    • Nelander, S.1    Mostad, P.2    Lindahl, P.3
  • 18
    • 0033518256 scopus 로고    scopus 로고
    • Synexpression groups in eukaryotes
    • Niehrs, C. and Pollet, N. (1999) Synexpression groups in eukaryotes. Nature, 402, 483-487.
    • (1999) Nature , vol.402 , pp. 483-487
    • Niehrs, C.1    Pollet, N.2
  • 19
    • 0026947554 scopus 로고
    • Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
    • Okubo, K., Hori, N., Matoba, R., Niiyama, T., Fukushima, A., Kojima, Y. and Matsubara ,K. (1992) Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nat. Genetics, 2, 173-179.
    • (1992) Nat. Genetics , vol.2 , pp. 173-179
    • Okubo, K.1    Hori, N.2    Matoba, R.3    Niiyama, T.4    Fukushima, A.5    Kojima, Y.6    Matsubara, K.7
  • 21
    • 0036796327 scopus 로고    scopus 로고
    • Identification and confirmation of a module of coexpressed genes
    • Thompson, H.G., Harris, J.W., Wold, B.J., Quake, S.R. and Brody, J.P. (2002) Identification and confirmation of a module of coexpressed genes. Genome Res., 12, 1517-1522.
    • (2002) Genome Res. , vol.12 , pp. 1517-1522
    • Thompson, H.G.1    Harris, J.W.2    Wold, B.J.3    Quake, S.R.4    Brody, J.P.5
  • 23
    • 0033452362 scopus 로고    scopus 로고
    • Prediction of gene function by genome-scale expression analysis: Prostate cancer-associated genes
    • Walker, M.G., Volkmuth, W., Sprinzak, E., Hodgson, D. and Klingler, T. (1999) Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes. Genome Res., 9, 1198-1203.
    • (1999) Genome Res. , vol.9 , pp. 1198-1203
    • Walker, M.G.1    Volkmuth, W.2    Sprinzak, E.3    Hodgson, D.4    Klingler, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.