The unified grass genome: Synergy in synteny

Genome Research

Volumn 7, Issue 4, 1997, Pages 301-306

  Bennetzen, Jeffrey L ^a   Freeling, Michael ^b  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; GENE MAPPING; GENOME; GRASS; MAIZE; NONHUMAN; PLANT LEAF; PRIORITY JOURNAL; REVIEW; RICE; SYNTENY; WHEAT;

EID: 0030932665     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.4.301     Document Type: Review

References (40)

1. Ahn, S. and S.D. Tanksley. 1993. Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. 90: 7980-7984.
2. Ahn, S., J.A. Anderson, M.E. Sorrells, and S.D. Tanksley. 1993. Homoeologous relationships of rice, wheat and maize chromosomes. Molec. Gen. Genet. 241: 483-490.
3. Arumuganathan, K. and E.D. Earle. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
4. Avramova, Z., A. Tikhonov, P. SanMiguel, Y.-K. Jin, C. Liu, S.-S. Woo, R.A. Wing, and J.L. Bennetzen. 1996. Gene identification in a complex chromosomal continuum by local genomic cross-referencing. Plant J. 10: 1163-1168.
5. Bennetzen, J.L. 1996. The use of comparative genome mapping in the identification, cloning and manipulation of important plant genes. In The impact of plant molecular genetics (ed. B.W.S. Sobral), pp. 71-85. Birkhauser, Boston, MA.
6. Bennetzen, J.L. and M. Freeling. 1993. Grasses as a single genetic system: Genome composition, collinearity and compatibility. Trends Genet. 9: 259-261.
7. Blakey, C.A., C.L. Dewald, and E.H. Coe. 1994. Co-segregation of the gynomonecious sex form 1 gene (gsf1) of Tripsacum dactyloides (Poaceae) with molecular markers. Genome 37: 809-812.
8. Bonierbale, M.W., R.L. Plaisted, and S.D. Tanksley. 1988. RFLP maps based on a set of common clones reveals modes of chromosomal evolution in potato and tomato. Genetics 12O: 1095-1103.
9. Camirand, A., B. St. Pierre, C. Marineau, and N. Brisson. 1990. Occurrence of a copia-like transposable element in one of the introns of the potato starch phosphorylase gene. Mol. & Gen. Genet. 224: 33-39.
10. Carman, J. 1995. Gametophytic angiosperm apomicts and the occurrence of polyspory and polyembrony among their relatives. Apomixsis Newslett. 8: 39-53.
11. Chaffey, N.J. 1983. Epidermal structure in the ligule of rice. Ann. Bot. 52: 13-21.
12. Chen, M., P. SanMiguel, A.C. deOliveira, S.-S. Woo, H. Zhang, R.A. Wing, and J.L. Bennetzen. 1997. Microcolinearity in sh2-homologous regions of the maize, rice and sorghum genomes. Proc. Natl. Acad. Sci. (in press).
13. Clark, L.G., W. Zhang, and J.F. Wendel. 1995. A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst. Bot. 2O: 436-460.
14. Coe, E.H., S.M. McCormick, and S.A. Modena. 1981. White pollen in maize. J. Hered. 72: 318-320.
15. Crepet, W.L. and G.D. Feldman. 1991. The earliest remains of grasses in the fossil record. J. Bot. 78: 1010-1014.
16. DeLong, A., A. Calderon-Urres, and S. Dellaporta. 1993. Sex determination gene Tasselseed2 of maize encodes a short-chain alcohol dehydrogenase required for stage-specific floral organ abortion. Cell 74: 757-768.
17. Deshpande, V.G. and P.K. Ranjekar. 1980. Repetitive DNA in three Gramineae species with low DNA content. Z. Physiol. Chem. 361: 1223-1233.
18. Devos, K.M., T. Millan, and M.D. Gale. 1993. Comparative RFLP maps of the homoeologous group-2 chromosomes of wheat, rye and barley. Theor. Appl. Genet. 85: 784-792.
19. Dunford, R.P., N. Kurata, D.A. Laurie, T.A. Money, Y. Minobe, and G. Moore. 1995. Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae. Nucleic Acids Res. 23: 2724-2728.
20. Fatokun, C.A., D.I. Menancio-Hautea, D. Danesh, and N.D. Young. 1992. Evidence for orthologous seed weight genes in cowpea and mungbean based on RFLP mapping. Genetics 132: 841-846.
21. Flavell, R.B., M.D. Bennett, J.B. Smith, and D.E. Smith. 1974. Genome size and proportion of repeated nucleotide sequence DNA in plants. Biochem. Genet. 12: 257-269.
22. Helentjaris, T., D.L. Weber, and S. Wright. 1988. Identification of the genomic locations of duplicate nucleotide sequences in maize by the analysis of restriction fragment length polymorphisms. Genetics 118: 353-363.
23. Hulbert, S.H., T.E. Richter, J.D. Axtell, and J.L. Bennetzen. 1990. Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes. Proc. Natl. Acad. Sci. 87: 4251-4255.
24. Kellogg, E.A. and J.A. Birchler. 1993. Linking phylogeny and genetics: Zea mays as a tool for phylogenetic studies. Syst. Biol. 42: 415-439.
25. Kilian, A., D.A. Kudrna, A. Kleinhofs, M. Yano, N. Kurata, B. Steffenson, and T. Sasaki. 1995. Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region. Nucleic Acids Res. 23: 2729-2733.
26. Kowalski, S.P., T.-H. Lan, K.A. Feldmann, and A.H. Paterson. 1994. Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organisation. Genetics 138: 499-510.
27. Kurata, N., G. Moore, Y. Nagamura, T. Foote, M. Yano, Y. Minobe, and M.D. Gale. 1994. Conservation of genome structure between rice and wheat. BioTechnology 12: 276-278.
28. Laurie, D.A., L.S. Donoughue, and M.D. Bennett. 1990. Wheat x maize and other wide sexual hybrids: Their potential for crop improvement and genetic manipulation. In Genetic manipulation in plant development II (ed. J.P. Gustafson), pp. 95-106. Plenum Press, New York, NY.
29. Linder, H.P. 1986. The evolutionary history of the Poales/Restionales - A hypothesis. Kew Bull. 42: 297-310.
30. Moore, G., K.M. Devos, Z. Wang, and M.D. Gale. 1995a. Grasses, line up and form a circle. Curr. Biol. 5: 737-739.
31. Moore, G., T. Foote, T. Helentjaris, K. Devos, N. Kurata, and M. Gale. 1995b. Was there a single ancestral grass chromosome? Trends Genet. 11: 81-82.
32. Ozias-Akins, P., E.L. Lubbers, W.W. Hanna, and J.W. McNay. 1993. Transmission of the apomictic mode of reproduction in Pennisetum: Coinheritance of the trait and molecular markers, Theor. Appl. Genet. 85: 1714-1718.
33. Paterson, A.H., Y.-R. Lin, Z. Li, K.F. Schertz, J.F. Doebley, S.R.M. Pinson, S.-C. Liu, J.W. Stansel, and J.E. Irvine. 1995. Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1717.
34. Prince, J.P., E. Pochard, and S.D. Tanksley. 1993. Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome 36: 404-417.
35. SanMiguel, P., A. Tikhonov, Y.-K. Jin, N. Motchoulskaia, D. Zakharov, A. Melake-Berhan, P.S. Springer, K.J. Edwards, Z. Avramova, and J.L. Bennetzen. 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
36. Sanz-Alferez, S., T.E. Richter, S.H. Hulbert, and J.L. Bennetzen. 1995. The Rp3 disease resistance gene of maize: Mapping and characterization of introgressed alleles. Theor. Appl. Genet. 91: 25-32.
37. Savidan, Y., D. Grimanelli, and O. Leblanc. 1995. Apomixis expression in a maize-Tripsacum hybrid derivative and the implications regarding its control and potential for manipulation. Apomixis Newslett. 8: 35-37.
38. Sylvester, A.W., W.Z. Cande, and M. Freeling. 1990. Division and differentiation during normal and liguleless1 maize leaf development. Development 11O: 985-1000.
39. Tanksley, S.D., R. Bernatzky, N.L. Lapitan, and J.P. Prince. 1988. Conservation of gene repertoire but not gene order in pepper and tomato. Proc. Natl. Acad. Sci. 85: 6419-6423.
40. Weeden, N.F., F.J. Muehlbauer, and G. Ladizinsky. 1992. Extensive conservation of linkage relationships between pea and lentil genetic maps. J. Hered. 83: 123-129.