메뉴 건너뛰기




Volumn 97, Issue 5, 2004, Pages 584-591

Deciphering gene expression profiles generated from DNA microarrays and their applications in oral medicine

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

EID: 2442555952     PISSN: 10792104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tripleo.2003.11.016     Document Type: Article
Times cited : (8)

References (44)
  • 1
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub T.R., Slonim D.K., Tamayo P., Huard C., Gaasenbeek M., Mesiror J.P., et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 286:1999;531-537
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesiror, J.P.6
  • 2
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • Alizadeh A.A., Eisen M.B., Davis R.E., Ma C., Lossos I.S., Rosenwald A., et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature. 403:2000;503-511
    • (2000) Nature , vol.403 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3    Ma, C.4    Lossos, I.S.5    Rosenwald, A.6
  • 3
    • 0034601455 scopus 로고    scopus 로고
    • Molecular classification of cutaneous malignant melanoma by gene expression profiling
    • Bittner M., Meltzer P., Chen Y., Jiang Y., Seftor E., Hendrix M., et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature. 406:2000;536-540
    • (2000) Nature , vol.406 , pp. 536-540
    • Bittner, M.1    Meltzer, P.2    Chen, Y.3    Jiang, Y.4    Seftor, E.5    Hendrix, M.6
  • 5
    • 0036820527 scopus 로고    scopus 로고
    • Associations between gene expressions in breast cancer and patient survival
    • Jenssen T.K., Kuo W.P., Stokke T., Hovig E. Associations between gene expressions in breast cancer and patient survival. Hum Genet. 111:2002;411-420
    • (2002) Hum Genet , vol.111 , pp. 411-420
    • Jenssen, T.K.1    Kuo, W.P.2    Stokke, T.3    Hovig, E.4
  • 9
    • 0034130561 scopus 로고    scopus 로고
    • Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
    • Brenner S., Johnson M., Bridgham J., Golda G., Lloyd D.H., Johnson D., et al. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol. 18:2000;630-634
    • (2000) Nat Biotechnol , vol.18 , pp. 630-634
    • Brenner, S.1    Johnson, M.2    Bridgham, J.3    Golda, G.4    Lloyd, D.H.5    Johnson, D.6
  • 10
    • 17344371740 scopus 로고    scopus 로고
    • High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
    • Pinkel D., Segraves R., Sudar D., Clark S., Poole I., Kowbel D., et al. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet. 20:1998;207-211
    • (1998) Nat Genet , vol.20 , pp. 207-211
    • Pinkel, D.1    Segraves, R.2    Sudar, D.3    Clark, S.4    Poole, I.5    Kowbel, D.6
  • 11
  • 12
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 13
    • 0036211063 scopus 로고    scopus 로고
    • Analysis of matched mRNA measurements from two different microarray technologies
    • Kuo W.P., Jenssen T.K., Butte A.J., Ohno-Machado L., Kohane I.S. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics. 18:2002;405-412
    • (2002) Bioinformatics , vol.18 , pp. 405-412
    • Kuo, W.P.1    Jenssen, T.K.2    Butte, A.J.3    Ohno-Machado, L.4    Kohane, I.S.5
  • 14
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray data
    • Quackenbush J. Computational analysis of microarray data. Nat Rev Genet. 2:2001;418-427
    • (2001) Nat Rev Genet , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 15
    • 84947318637 scopus 로고
    • Locally weighted regression: An approach to regression analysis by local fitting
    • Cleveland W.S., Devlin S.J. Locally weighted regression: an approach to regression analysis by local fitting. J Am Stat Assoc. 83:1988;596-610
    • (1988) J Am Stat Assoc , vol.83 , pp. 596-610
    • Cleveland, W.S.1    Devlin, S.J.2
  • 17
    • 0034687593 scopus 로고    scopus 로고
    • Decreased SLIM1 expression and increased gelsolin expression in failing human hearts measured by high-density oligonucleotide arrays
    • Yang J., Moravec C.S., Sussman M.A., DiPaola N.R., Fu D., Hawthorn L., et al. Decreased SLIM1 expression and increased gelsolin expression in failing human hearts measured by high-density oligonucleotide arrays. Circulation. 102:2000;3046-3052
    • (2000) Circulation , vol.102 , pp. 3046-3052
    • Yang, J.1    Moravec, C.S.2    Sussman, M.A.3    Dipaola, N.R.4    Fu, D.5    Hawthorn, L.6
  • 18
    • 0035814781 scopus 로고    scopus 로고
    • Effects of early angiotensin-converting enzyme inhibition on cardiac gene expression after acute myocardial infarction
    • Jin H., Yang R., Awad T.A., Wang F., Li W., Williams S.P., et al. Effects of early angiotensin-converting enzyme inhibition on cardiac gene expression after acute myocardial infarction. Circulation. 103:2001;736-742
    • (2001) Circulation , vol.103 , pp. 736-742
    • Jin, H.1    Yang, R.2    Awad, T.A.3    Wang, F.4    Li, W.5    Williams, S.P.6
  • 19
  • 20
    • 33845800897 scopus 로고    scopus 로고
    • Stochastic algorithms in gene expression analysis
    • Albrecht A, Steinhofel K, editors. SAGA 2003 - Stochastic Algorithms: Foundations and Applications
    • Ohno-Machado L, Kuo WP. Stochastic algorithms in gene expression analysis. In: Albrecht A, Steinhofel K, editors. SAGA 2003 - Stochastic Algorithms: Foundations and Applications, volume 2827 of Lecture Notes in Computer Science/Lecture Notes in Artificial Intelligence. p. 39-49.
    • Lecture Notes in Computer Science/Lecture Notes in Artificial Intelligence , vol.2827 , pp. 39-49
    • Ohno-Machado, L.1    Kuo, W.P.2
  • 21
    • 0035999974 scopus 로고    scopus 로고
    • Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
    • Xu Y., Olman V., Xu D. Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics. 18:2002;536-545
    • (2002) Bioinformatics , vol.18 , pp. 536-545
    • Xu, Y.1    Olman, V.2    Xu, D.3
  • 22
    • 0037212546 scopus 로고    scopus 로고
    • A neural network-based similarity index for clustering DNA microarray data
    • Sawa T., Ohno-Machado L. A neural network-based similarity index for clustering DNA microarray data. Comput Biol Med. 33:2003;1-15
    • (2003) Comput Biol Med , vol.33 , pp. 1-15
    • Sawa, T.1    Ohno-Machado, L.2
  • 24
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter O., Brown P.O., Botstein D. Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A. 97:2000;10101-10106
    • (2000) Proc Natl Acad Sci U S a , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 25
    • 0042863923 scopus 로고    scopus 로고
    • Analysis of gene expression data using self-organizing maps
    • Toronen P., Kolehmainen M., Wong G., Castren E. Analysis of gene expression data using self-organizing maps. FEBS Lett. 451:1999;142-146
    • (1999) FEBS Lett , vol.451 , pp. 142-146
    • Toronen, P.1    Kolehmainen, M.2    Wong, G.3    Castren, E.4
  • 26
    • 0346109672 scopus 로고    scopus 로고
    • Gene induction and categorical reprogramming during in vitro human endometrial fibroblast decidualization
    • Brar A.K., Handwerger S., Kessler C.A., Aronow B.J. Gene induction and categorical reprogramming during in vitro human endometrial fibroblast decidualization. Physiol Genomics. 7:2001;135-148
    • (2001) Physiol Genomics , vol.7 , pp. 135-148
    • Brar, A.K.1    Handwerger, S.2    Kessler, C.A.3    Aronow, B.J.4
  • 28
    • 0031616241 scopus 로고    scopus 로고
    • Reveal, a general reverse engineering algorithm for inference of genetic network architectures
    • Liang S., Fuhrman S., Somogyi R. Reveal, a general reverse engineering algorithm for inference of genetic network architectures. Pac Symp Biocomput. 1998;18-29
    • (1998) Pac Symp Biocomput , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 29
    • 0036358442 scopus 로고    scopus 로고
    • Discovery of causal relationships in a gene-regulation pathway from a mixture of experimental and observational DNA microarray data
    • Yoo C., Thorsson V., Cooper G.F. Discovery of causal relationships in a gene-regulation pathway from a mixture of experimental and observational DNA microarray data. Pac Symp Biocomput. 2002;498-509
    • (2002) Pac Symp Biocomput , pp. 498-509
    • Yoo, C.1    Thorsson, V.2    Cooper, G.F.3
  • 30
    • 0036786327 scopus 로고    scopus 로고
    • Transcriptional expression profiles of oral squamous cell carcinomas
    • Mendez E., Cheng C., Farwell D.G., Ricks S., Agoff S.N., Futran N.D., et al. Transcriptional expression profiles of oral squamous cell carcinomas. Cancer. 95:2002;1482-1494
    • (2002) Cancer , vol.95 , pp. 1482-1494
    • Mendez, E.1    Cheng, C.2    Farwell, D.G.3    Ricks, S.4    Agoff, S.N.5    Futran, N.D.6
  • 32
    • 0038604838 scopus 로고    scopus 로고
    • Classification and identification of genes associated with oral cancer based on gene expression profiles. a preliminary study
    • Kuo W.P., Hasina R., Ohno-Machado L., Lingen M.W. Classification and identification of genes associated with oral cancer based on gene expression profiles. A preliminary study. N Y State Dent J. 69:2003;23-26
    • (2003) N Y State Dent J , vol.69 , pp. 23-26
    • Kuo, W.P.1    Hasina, R.2    Ohno-Machado, L.3    Lingen, M.W.4
  • 33
    • 0034192040 scopus 로고    scopus 로고
    • Genetic aberrations in oral or head and neck squamous cell carcinoma (SCCHN): 1. Carcinogen metabolism, DNA repair and cell cycle control
    • Scully C., Field J.K., Tanzawa H. Genetic aberrations in oral or head and neck squamous cell carcinoma (SCCHN): 1. Carcinogen metabolism, DNA repair and cell cycle control. Oral Oncol. 36:2000;256-263
    • (2000) Oral Oncol , vol.36 , pp. 256-263
    • Scully, C.1    Field, J.K.2    Tanzawa, H.3
  • 34
    • 0037864294 scopus 로고    scopus 로고
    • Prognostic relevance of molecular markers of oral cancer - A review
    • Schliephake H. Prognostic relevance of molecular markers of oral cancer - a review. Int J Oral Maxillofac Surg. 32:2003;233-245
    • (2003) Int J Oral Maxillofac Surg , vol.32 , pp. 233-245
    • Schliephake, H.1
  • 35
    • 0035674598 scopus 로고    scopus 로고
    • Adhesive mechanisms regulating invasion and metastasis in oral cancer
    • Ziober B.L., Silverman S.S. Jr., Kramer R.H. Adhesive mechanisms regulating invasion and metastasis in oral cancer. Crit Rev Oral Biol Med. 12:2001;499-510
    • (2001) Crit Rev Oral Biol Med , vol.12 , pp. 499-510
    • Ziober, B.L.1    Silverman Jr., S.S.2    Kramer, R.H.3
  • 37
    • 0030999555 scopus 로고    scopus 로고
    • A breakpoint map of recurrent chromosomal rearrangements in human neoplasia
    • Mitelman F., Mertens F., Johansson B. A breakpoint map of recurrent chromosomal rearrangements in human neoplasia. Nat Genet. 15:(Suppl):1997;417- 474
    • (1997) Nat Genet , vol.15 , Issue.SUPPL. , pp. 417-474
    • Mitelman, F.1    Mertens, F.2    Johansson, B.3
  • 38
    • 0035120289 scopus 로고    scopus 로고
    • Chromosomal alterations in squamous cell carcinomas of the head and neck: Window to the biology of disease
    • Gollin S.M. Chromosomal alterations in squamous cell carcinomas of the head and neck: window to the biology of disease. Head Neck. 23:2001;238-253
    • (2001) Head Neck , vol.23 , pp. 238-253
    • Gollin, S.M.1
  • 40
    • 0036562520 scopus 로고    scopus 로고
    • Oral complications of cancer therapy
    • 691-2, 695
    • Sonis S.T., Fey E.G. Oral complications of cancer therapy. Oncology (Huntingt). 16:2002;680-686. 691-2, 695
    • (2002) Oncology (Huntingt) , vol.16 , pp. 680-686
    • Sonis, S.T.1    Fey, E.G.2
  • 41
    • 0036044091 scopus 로고    scopus 로고
    • The biologic role for nuclear factor-kappaB in disease and its potential involvement in mucosal injury associated with anti-neoplastic therapy
    • Sonis S.T. The biologic role for nuclear factor-kappaB in disease and its potential involvement in mucosal injury associated with anti-neoplastic therapy. Crit Rev Oral Biol Med. 13:2002;380-389
    • (2002) Crit Rev Oral Biol Med , vol.13 , pp. 380-389
    • Sonis, S.T.1
  • 42
    • 0035412398 scopus 로고    scopus 로고
    • Pharmacogenetics of methotrexate: Toxicity among marrow transplantation patients varies with the methylenetetrahydrofolate reductase C677T polymorphism
    • Ulrich C.M., Yasui Y., Storb R., Schubert M.M., Wagner J.L., Bigler J., et al. Pharmacogenetics of methotrexate: toxicity among marrow transplantation patients varies with the methylenetetrahydrofolate reductase C677T polymorphism. Blood. 98:2001;231-234
    • (2001) Blood , vol.98 , pp. 231-234
    • Ulrich, C.M.1    Yasui, Y.2    Storb, R.3    Schubert, M.M.4    Wagner, J.L.5    Bigler, J.6
  • 43
    • 0037231945 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms (SNPs) in human beta-defensin 1: High-throughput SNP assays and association with Candida carriage in type I diabetics and nondiabetic controls
    • Jurevic R.J., Bai M., Chadwick R.B., White T.C., Dale B.A. Single-nucleotide polymorphisms (SNPs) in human beta-defensin 1: high-throughput SNP assays and association with Candida carriage in type I diabetics and nondiabetic controls. J Clin Microbiol. 41:2003;90-96
    • (2003) J Clin Microbiol , vol.41 , pp. 90-96
    • Jurevic, R.J.1    Bai, M.2    Chadwick, R.B.3    White, T.C.4    Dale, B.A.5
  • 44
    • 0036842318 scopus 로고    scopus 로고
    • Analysis of temporomandibular joint synovial fluid using Fourier transform/infrared spectroscopy
    • Ziegler C.M., Kircher P., Hassfeld S. Analysis of temporomandibular joint synovial fluid using Fourier transform/infrared spectroscopy. J Oral Maxillofac Surg. 60:2002;1302-1306
    • (2002) J Oral Maxillofac Surg , vol.60 , pp. 1302-1306
    • Ziegler, C.M.1    Kircher, P.2    Hassfeld, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.