Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum

Journal of Biological Chemistry

Volumn 280, Issue 18, 2005, Pages 18326-18335

  Shin, Dong Hae ^a   Oganesyan, Natalia ^a   Jancarik, Jaru ^a   Yokota, Hisao ^a   Kim, Rosalind ^a   Kim, Sung Hou ^a,b  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; CRYSTAL STRUCTURE; INORGANIC ACIDS; PHOSPHATES;

C-TERMINAL DOMAIN; N-TERMINAL DOMAIN; PHOSPHORIBOSYLTRANSFERASE; THEMOPLASMA ACIDOPHILUM;

ENZYMES;

AMIDE; CYSTEINE; NICOTINATE NUCLEOTIDE PYROPHOSPHORYLASE (CARBOXYLATING); NICOTINATE PHOSPHORIBOSYLTRANSFERASE; NICOTINIC ACID; NICOTINIC ACID NUCLEOTIDE; PHENYLALANINE; PHOSPHATE; PHOSPHORIBOSYL PYROPHOSPHATE; PHOSPHORIBOSYLTRANSFERASE; PYROPHOSPHATE; QUINOLINIC ACID; TYROSINE; UNCLASSIFIED DRUG; ZINC; ARCHAEAL PROTEIN; GLYCOSYLTRANSFERASE;

ALPHA CHAIN; AMINO TERMINAL SEQUENCE; ARTICLE; BETA CHAIN; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME STRUCTURE; NONHUMAN; PRE B LYMPHOCYTE; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; THERMOPLASMA ACIDOPHILUM; AMINO ACID SEQUENCE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; ENZYMOLOGY; ISOLATION AND PURIFICATION; MOLECULAR CLONING; MOLECULAR GENETICS; THERMOPLASMA; X RAY CRYSTALLOGRAPHY;

THERMOPLASMA ACIDOPHILUM;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; BINDING SITES; CLONING, MOLECULAR; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PENTOSYLTRANSFERASES; THERMOPLASMA;

EID: 24044512630     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M501622200     Document Type: Article

References (34)

1. Lin, S. J., and Guarente, L. (2003) Curr. Opin. Cell Biol. 15, 241-246
2. Kucharczyk, R., Zagulski, M., Rytka, J., and Herbert, C. J. (1998) FEBS Lett. 424, 127-130
3. Tritz, G. J. (1987) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhardt, F. C., ed) pp 557-563, American Society for Microbiology Press, Washington, D. C.
4. Berger, F., Ramirez-Hernandez, M. H., Ziegler, M. (2004) Trends Biochem. Sci. 29, 111-118
5. Denu, J. M. (2003) Trends Biochem. Sci. 28, 41-48
6. Hekimi, S., and Guarente, L. (2003) Science 299, 1351-1354
7. Anderson, R. M., Bitterman, K. J., Wood, J. G., Medvedik, O., and Sinclair, D. A. (2003) Nature 423, 181-185
8. Lin, S. J., Defossez, P. A., and Guarente, L. (2000) Science 289, 2126-2128
9. Anderson, R. M., Bitterman, K. J., Wood, J. G., Medvedik, O., Cohen, H., Lin, S. S., Manchester, J. K., Gordon, J. I., and Sinclair, D. A. (2002) J. Biol. Chem. 277, 18881-18890
10. Gross, J. W., Rajavel, M., and Grubmeyer, C. (1998) Biochemistry 37, 4189-4199
11. Rajavel, M., Lalo, D., Gross, J. W., and Grubmeyer, C. (1998) Biochemistry 37, 4181-4188
12. Bateman, A., Birney, E., Durbin, R., Eddy, S. R., Howe, K. L., and Sonnhammer, E. L. (2000) Nucleic Acids Res. 30, 276-280
13. Rongvaux, A., Shea, R. J., Mulks, M. H., Gigot, D., Urbain, J., Leo, O., and Andris, F. (2002) Eur. J. Immunol. 32, 3225-3234
14. Aslanidis, C., and de Jong, P. J. (1990) Nucleic Acids Res. 20, 6069-6074
15. Kim, R., Sandler, S. J., Goldman, S., Yokota, H., Clark, A. J., and Kim, S.-H. (1998) Biotechnol. Lett. 20, 207-210
16. Leahy, D. J., Hendrickson, W. A., Aukhil, I., and Erickson, H. P. (1992) Science 258, 987-991
17. Jancarik, J., and Kim, S.-H. (1991) J. Appl. Crystallogr. 24, 409-411
18. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
19. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
20. Jones, A., and Kleywegt, G. (1997) Methods Enzymol. 277, 173-208
21. Jones, D. T. (1999) J. Mol. Biol. 292, 195-202
22. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
23. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
24. Sharma, V., Grubmeyer, C., Sacchettini, J. C. (1998) Structure 6, 1587-1599
25. Holm, L., and Sander, C. (1997) Nucleic Acids Res. 25, 231-234
26. Eads, J. C., Ozturk, D., Wexler, T. B., Grubmeyer, C., and Sacchettini, J. C. (1997) Structure 5, 47-58
27. Sinha, S. C., and Smith, J. L. (2001) Curr. Opin. Struct. Biol. 11, 733-739
28. Wilmanns, M., Hyde, C. C., Davies, D. R., Kirschner, K., and Jansonius, J. N. (1991) Biochemistry 30, 9161-9169
29. Kim, K. K., Song, H. K., Shin, D. H., Hwang, K. Y., Choe, S., Yoo, O. J., and Suh, S. W. (1997) Structure 5, 1571-1584
30. Fletcher, R. J., Bishop, B. E., Leon, R. P., Sclafani, R. A., Ogata, C. M., and Chen, X. S. (2003) Nat. Struct. Biol. 10, 160-167
31. Marchler-Bauer, A., Anderson, J. B., DeWeese-Scott, C., Fedorova, N. D., Geer, L. Y., He, S., Hurwitz, D. I., Jackson, J. D., Jacobs, A. R., Lanczycki, C. J., Liebert, C. A., Liu, C., Madej, T., Marchler, G. H., Mazumder, R., Nikolskaya, A. N., Panchenko, A. R., Rao, B. S., Shoemaker, B. A., Simonyan, V., Song, J. S., Thiessen, P. A., Vasudevan, S., Wang, Y., Yamashita, R. A., Yin, J. J., and Bryant, S. H. (2003) Nucleic Acids Res. 31, 383-387
32. Carson, M. (1991) J. Appl. Crystallogr. 24, 958-961
33. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
34. Nicholls, A. (1991) Proteins 11, 281-296