Structure-function analysis of the three domains of RuvB DNA motor protein

Journal of Biological Chemistry

Volumn 280, Issue 34, 2005, Pages 30504-30510

  Ohnishi, Takayuki ^a   Hishida, Takashi ^a   Harada, Yoshie ^b,d   Iwasaki, Hiroshi ^c   Shinagawa, Hideo ^a,b  

^a OSAKA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c YOKOHAMA CITY UNIVERSITY   (Japan)

^d TOKYO METROPOLITAN INSTITUTE OF MEDICAL SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINETRIPHOSPHATE; CRYSTAL STRUCTURE; DIMERS; DNA; HYDROLYSIS; MONOMERS;

DNA BINDING; HEXAMERIC RINGS; RUVB PROTEIN; THERMUS THERMOPHILUS (TTH);

PROTEINS;

ADENOSINE TRIPHOSPHATE; ARGININE; DNA; MOLECULAR MOTOR; PROTEIN RUVA; PROTEIN RUVB; TETRAMER; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; CRYSTAL STRUCTURE; DNA BINDING; HOLLIDAY JUNCTION; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; PROTEIN TERTIARY STRUCTURE; STRUCTURE ACTIVITY RELATION; THERMUS THERMOPHILUS;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CHROMATOGRAPHY, GEL; CRYSTALLOGRAPHY, X-RAY; DNA; DNA REPAIR; DNA, CRUCIFORM; DOSE-RESPONSE RELATIONSHIP, RADIATION; ESCHERICHIA COLI; GLYCEROL; HYDROLYSIS; KINETICS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; PLASMIDS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RECOMBINATION, GENETIC; SEQUENCE HOMOLOGY, AMINO ACID; STRUCTURE-ACTIVITY RELATIONSHIP; TEMPERATURE; THERMUS THERMOPHILUS; TIME FACTORS; ULTRAVIOLET RAYS;

THERMUS THERMOPHILUS;

EID: 24044482592     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M502400200     Document Type: Article

References (36)

1. Holliday, R. (1964) Genet. Res. 5, 282-304
2. Shinagawa, H., and Iwasaki, H. (1996) Trends Biochem. Sci. 21, 107-111
3. West, S. C. (1997) Annu. Rev. Genet. 31, 213-244
4. Stasiak, A., Tsaneva, I. R., West, S. C., Benson, C. J., Yu, X., and Egelman, E. H. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7618-7622
5. Roe, S. M., Barlow, T., Brown, T., Oram, M., Keeley, A., Tsaneva, I. R., and Pearl, L. H. (1998) Mol. Cell 2, 361-372
6. Privezentzev, C. V., Keeley, A., Sigala, B., and Tsaneva, I. R. (2005) J. Biol. Chem. 280, 3365-3375
7. Dunderdale, H. J., Benson, F. E., Parsons, C. A., Sharples, G. J., Lloyd, R. G., and West, S. C. (1991) Nature 354, 506-510
8. Iwasaki, H., Takahagi, M., Shiba, T., Nakata, A., and Shinagawa, H. (1991) EMBO J. 10, 4381-4389
9. Iwasaki, H., Takahagi, M., Nakata, A., and Shinagawa, H. (1992) Genes Dev. 6, 2200-2214
10. Tsaneva, I. R., Müller, B., and West, S. C. (1992) Cell 69, 1171-1180
11. Shiba, T., Iwasaki, H., Nakata, A., and Shinagawa, H. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 8445-8449
12. Müller, B., Tsaneva, I. R., and West, S. C. (1993) J. Biol. Chem. 268, 17185-17189
13. Neuwald, A. F., Aravind, L., Spouge, J. L., and Koonin, E. V. (1999) Genome Res. 9, 27-43
14. Iwasaki, H., Han, Y. W., Okamoto, T., Ohnishi, T., Yoshikawa, M., Yamada, K., Toh, H., Daiyasu, H., Ogura, T., and Shinagawa, H. (2000) Mol. Microbiol. 36, 528-538
15. Yamada, K., Kunishima, N., Mayanagi, K., Ohnishi, T., Nishino, T., Iwasaki, H., Shinagawa, H., and Morikawa, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 1442-1447
16. Putnam, C. D., Clancy, S. B., Tsuruta, H., Gonzalez, S., Wetmur, J. G., and Tainer, J. A. (2001) J. Mol. Biol. 311, 297-310
17. Nishino, T., Iwasaki, H., Kataoka, M., Ariyoshi, M., Fujita, T., Shinagawa, H., Morikawa, K. (2000) J. Mol. Biol. 298, 407-416
18. Han, Y. W., Iwasaki, H., Miyata, T., Mayanagi, K., Yamada, K., Morikawa, K., and Shinagawa, H. (2001) J. Biol. Chem. 276, 35024-35028
19. Yamada, K., Miyata, T., Tsuchiya, D., Oyama, T., Fujiwara, Y., Ohnishi, T., Iwasaki, H., Shinagawa, H., Ariyoshi, M., Mayanagi, K., Morikawa, K. (2002) Mol. Cell 10, 671-681
20. Hishida, T., Han, Y. W., Fujimoto, S., Iwasaki, H., and Shinagawa, H. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 9573-9577
21. Hishida, T., Iwasaki, H., Ishioka, K., and Shinagawa, H. (1996) Gene (Amst.) 182, 63-70
22. Bachmann, B. J. (1972) Bacteriol. Rev. 36, 525-557
23. Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Methods Enzymol. 185, 60-89
24. Yamada, K., Fukuoh, A., Iwasaki, H., and Shinagawa, H. (1999) Mol. Gen. Genet. 261, 1001-1011
25. Ariyoshi, M., Vassylyev, D. G., Iwasaki, H., Nakamura, H., Shinagawa, H., and Morikawa, K. (1994) Cell 78, 1063-1072
26. Nishino, T., Ariyoshi, M., Iwasaki, H., Shinagawa, H., and Morikawa, K. (1998) Structure 6, 11-21
27. Hishida, T., Iwasaki, H., Yagi, T., and Shinagawa, H. (1999) J. Biol. Chem. 274, 25335-25342
28. Ohnishi, T., Iwasaki, H., Ishino, Y., Kuramitsu, S., Nakata, A., Shinagawa, H. (2000) Genes Genet. Syst. 75, 233-243
29. Hishida, T., Iwasaki, H., Han, Y. W., Ohnishi, T., and Shinagawa, H. (2003) Genes Cells 8, 721-730
30. Hishida, T., Han, Y. W., Shibata, T., Kubota, Y., Ishino, Y., Iwasaki, H., and Shinagawa, H. (2004) Genes Dev. 18, 1886-1897
31. Parsons, C. A., and West, S. C. (1993) J. Mol. Biol. 232, 397-405
32. Ichiyanagi, K., Iwasaki, H., Hishida, T., and Shinagawa, H. (1998) Genes Cells 3, 575-586
33. Siegel, L. M., and Monty, K. J. (1966) Biochim. Biophys. Acta. 112, 346-362
34. Tsaneva, I. R., Illing, G., Lloyd, R. G., and West, S. C. (1992) Mol. Gen. Genet. 235, 1-10
35. Shiba, T., Iwasaki, H., Nakata, A., and Shinagawa, H. (1993) Mol. Gen. Genet. 237, 395-399
36. Mitchell, A. H., and West, S. C. (1994) J. Mol. Biol. 243, 208-215