Novel properties of the Thermus thermophilus RuvB protein, which promotes branch migration of Holliday junctions

Molecular and General Genetics

Volumn 261, Issue 6, 1999, Pages 1001-1011

  Yamada, K ^a   Fukuoh, A ^a   Iwasaki, H ^a   Shinagawa, H ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

ATPase; DNA helicase; Recombination; RuvB protein; Thermus thermophilus

Indexed keywords

ADENOSINE TRIPHOSPHATASE; DEOXYGUANOSINE TRIPHOSPHATE; DNA BINDING PROTEIN; DOUBLE STRANDED DNA; GUANOSINE TRIPHOSPHATE;

ARTICLE; CONFORMATIONAL TRANSITION; DELETION MUTANT; DNA SUPERCOILING; ESCHERICHIA COLI; EUBACTERIUM; HOLLIDAY JUNCTION; HYDROLYSIS; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; THERMOSTABILITY; THERMUS THERMOPHILUS; ULTRAVIOLET RADIATION;

ADENOSINE TRIPHOSPHATASES; ADENOSINE TRIPHOSPHATE; BACTERIAL PROTEINS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, BACTERIAL; ENZYME STABILITY; ESCHERICHIA COLI; HEAT; HYDROLYSIS; THERMUS THERMOPHILUS; ULTRAVIOLET RAYS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA; THERMUS THERMOPHILUS;

EID: 0032789560     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380051049     Document Type: Article

References (40)

1. Bachmann BJ (1972) Pedigrees of some mutant strains of Esche richia coli K-12. Bacteriol Rev 36:525-57
2. Cladera J, Villaverde J, Hartog AF, Padros E, Berden JA, Rigaud JL, Dunach M (1995) Influence of nucleotides on the secondary structure and on the thermal stability of mitochondrial F1 visualized by infrared spectroscopy. FEBS Lett 371:115-118
3. Dong F, Gogol EP, von Hippel PH (1995) The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate. J Biol Chem 270:7462-7473
4. Dunderdale HJ, Benson FE, Parsons CA, Sharples GJ, Lloyd RG, West SC (1991) Formation and resolution of recombination intermediates by E. coli RecA and RuvC proteins. Nature 354:506-510
5. Egelman HH, Yu X, Wild R, Hingorani MM, Patel SS (1995) Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases. Proc Natl Acad Sci USA 92:3869-3873
6. Eggleston AK, Mitchell AH, West SC (1997) In vitro reconstitution of the late steps of genetic recombination in E. coli. Cell 89:607-617
7. Hargreaves D, Rice DW, Sedelnikova SE, Artymiuk PJ, Lloyd RG, Rafferty JB (1998) Crystal structure of E. coli RuvA with bound DNA Holliday junction at 6Å resolution. Nat Struct Biol 6:441-446
8. Hishida T, Iwakaki H, Ishioka K, Shinagawa H (1996) Molecular analysis of the Pseudomonas aeruginosa genes, ruvA, ruvB, and ruvC, involved in processing of homologous recombination intermediates. Gene 182:63-70
9. Holliday R (1964) A mechanism for gene conversion in fungi. Genet Res 5:282-304
10. Iwasaki H, Shiba T, Makino K, Nakata A, Shinagawa H (1989) Overproduction, purification, and ATPase activity of the Escherichia coli RuvB protein involved in DNA repair. J Bacteriol 171:5276-5280
11. Iwasaki H, Takahagi M, Shiba T, Nakata A, Shinagawa H (1991) Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure. EMBO J 10:4381-4389
12. Iwasaki H, Takahagi M, Nakata A, Shinagawa H (1992) Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration. Genes Dev 6:2214-2220
13. Kato R, Kuramitsu S (1993) RecA protein from an extremely thermophilic bacterium, Thermus thermophilus HB8. J Biochem 114:926-929
14. Marrione PE, Cox MM (1995) RuvB protein-mediated ATP hydrolysis: functional asymmetry in the RuvB hexamer. Biochemistry 34:9809-9818
15. Mastrangelo IA, Hough PV, Wall JS, Dodson M, Dean FB, Hurwitz J (1989) ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication. Nature 338:658-662
16. Menge KL, Bryant FR (1988) ATP-stimulated hydrolysis of GTP by RecA protein: kinetic consequences of cooperative RecA protein-ATP interactions. Biochemistry 27:2635-2640
17. Miller JH (1992) A short course in bacterial genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
18. Mitchell AH, West SC (1994) Hexameric rings of Escherichia coli RuvB protein: cooperative assembly, processivity, and ATPase activity. J Mol Biol 243:208-215
19. Müller B, Tsaneva IR, West SC (1993a) Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins. I. Comparison of RuvAB- and RuvB-mediated reactions. J Biol Chem 268:17179-17184
20. Müller B, Tsaneva IR, West SC (1993b) Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins. II. Interaction of RuvB with DNA. J Biol Chem 268:17185-17189
21. Nishino T, Ariyoshi M, Iwasaki H, Shinagawa H, Morikawa K (1998) Functional analyses of the domain structure in the Holliday junction binding protein RuvA. Structure 6:11-12
22. Notarnicola SM, Park K, Griffith JD, Richardson CC (1995) A domain of the gene 4 helicase/primase of bacteriophage T7 required for the formation of an active hexamer. J Biol Chem 270:20215-20224
23. Parsons CA, Stasiak A, Bennett RJ, West SC (1995) Structure of a multisubunit complex that promotes DNA branch migration. Nature 374:375-378
24. Patel SS, Hingorani MM (1993) Oligomeric structure of bacterio phage T7 DNA primase/helicase proteins. J Biol Chem 268:10668-10675
25. Rafferty JB, Sedelnikova SE, Hargreaves D, Artymiuk PJ, Baker PJ, Sharples GJ, Mahdi AA, Lloyd RG, Rice DW (1996) Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction. Science 274:415-421
26. Reha-Krantz LJ, Hurwitz J (1978) The dnaB gene product of Escherichia coli. I. Purification, homogeneity, and physical properties. J Biol Chem 253:4043-4050
27. Roe SM, Barlow T, Brown T, Oram M, Keeley A, Tsaneva IR, Pearl LH (1998) Crystal structure of an octameric RuvA-Holliday junction complex. Mol Cell 2:361-372
28. Russell CB, Thaler DS, Dahlquist FW (1989) Chromosomal transformation of Escherichia coli recD strains with linearized plasmids. J Bacteriol 171:2609-2613
29. San Martin MC, Stamford NP, Dammerova N, Dixon NE, Carazo JM (1995) A structural model for the Escherichia coli DnaB helicase based on electron microscopy data. J Struct Biol 114:167-176
30. Shiba T, Iwasaki H, Nakata A, Shinagawa H (1991) SOS-inducible DNA repair proteins, RuvA and RuvB, of Escherichia coli: functional interactions between RuvA and RuvB for ATP hydrolysis and renaturation of the cruciform structure in supercoiled DNA. Proc Natl Acad Sci USA 88:8445-8449
31. Shinagawa H, Iwasaki H (1996) Processing the Holliday junction in homologous recombination. Trends Biochem Sci 21:107-111
32. Studier FW, Rosenberg AH, Dunn JJ, Dubendorff JW (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60-89
33. Takahagi M, Iwasaki H, Nakata A, Shinagawa H (1991) Molecular analysis of the Escherichia coli ruvC gene, which encodes a Holliday junction-specific endonuclease. J Bacteriol 173:5747-5753
34. Tong J, Wetmur JG (1996) Cloning, sequencing, and expression of ruvB and characterization of RuvB proteins from two distantly related thermophilic eubacteria. J Bacteriol 178:2695-2700
35. Tsaneva IR, West SC (1994) Targeted versus non-targeted DNA helicase activity of the RuvA and RuvB proteins of Escherichia coli. J Biol Chem 269:26552-26558
36. Tsaneva IR, Müller B, West SC (1992) ATP-dependent branch migration of Holliday junction promoted by the RuvA and RuvB proteins of E. coli. Cell 69:1171-1180
37. Tsaneva IR, Müller B, West SC (1993) RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro. Proc Natl Acad Sci USA 90:1315-1319
38. Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945-951
39. West SC (1997) Processing of recombination intermediates by the RuvABC proteins. Annu Rev Genet 31:213-244
40. Whitby MC, Bolt EL, Chan SN, Lloyd RG (1996) Interactions between RuvA and RuvC at Holliday junctions: inhibition of junction cleavage and formation of a RuvA-RuvC-DNA complex. J Mol Biol 264:878-890