Crystal and solution structures of 7-amino-actinomycin D complexes with d(TTAGBrUT), d(TTAGTT) and d(TTTAGTTT)

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 4, 2005, Pages 407-415

  Alexopoulos, Eftichia ^a   Jares Erijman, Elizabeth A ^b   Jovin, Thomas M ^c   Klement, Reinhard ^c   Machinek, Reinhard ^a   Sheldrick, George M ^a   Usón, Isabel ^d  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^c MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^d INSTITUT DE BIOLOGIA MOLECULAR DE BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

7 AMINODACTINOMYCIN; 7-AMINOACTINOMYCIN D; ANTINEOPLASTIC ANTIBIOTIC; DACTINOMYCIN; DRUG DERIVATIVE; OLIGODEOXYRIBONUCLEOTIDE;

ARTICLE; BASE PAIRING; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; ELECTRON SPIN RESONANCE; NUCLEAR MAGNETIC RESONANCE; X RAY CRYSTALLOGRAPHY;

ANTIBIOTICS, ANTINEOPLASTIC; BASE PAIRING; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DACTINOMYCIN; ELECTRON SPIN RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OLIGODEOXYRIBONUCLEOTIDES;

EID: 23844487855     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S090744490500082X     Document Type: Article

References (46)

1. Angerman, N. S., Victor, T. A., Bell, C. L. & Danyluk, S. S. (1972). Biochemistry, 11, 2402-2411.
2. Bovey, F. A. (1972). High Resolution NMR of Macromolecules. New York: Academic Press.
3. Brown, D. R., Kurz, M., Kearns, D. R. & Hsu, V. L. (1994). Biochemistry, 33, 651-664.
4. Brünger, A. T. (1992). Nature (London), 355, 472-475.
5. Case, D. A., Pearlman, D. A., Caldwell, J. W., Cheatham, T. E., Ross, W. S., Simmerling, C. L., Dardeb, T. A., Merz, K. M., Stanton, A. L., Cheng, A. L., Vincent, J. J., Crowley, M., Ferguson, D. M., Radmer, R. J., Seibel, G. L., Singh, U. C., Weiner, P. K. & Kollman, P. A. (2002). AMBER7 computer program. University of California, San Francisco, USA.
6. Chen, F.-M. (1988). Biochemistry, 26, 4323-4331.
7. Chen, F.-M. & Sha, F. (2002). Biochemistry, 41, 5043-5049.
8. Chen, F.-M., Sha, F., Chin, K.-H. & Chou, S.-H. (2003). Biophys. J. 84, 432-439.
9. Chen, F.-M., Sha, F., Chin, K.-H. & Chou, S.-H. (2004). Nucleic Acids Res. 32, 271-277.
10. Chen, H., Liu, X. & Patel, D. J. (1996). J. Mol. Biol. 258, 457-479.
11. Chin, K.-H., Chen, F.-M. & Chou, S.-H. (2003). Nucleic Acids Res. 31, 2622-2629.
12. Chou, S.-H., Chin, K.-H. & Chen, F.-M. (2002). Proc. Natl Acad. Sci. USA, 99, 6625-6630.
13. Cowtan, K. & Main, P. (1996). Acta Cryst. D52, 43-48.
14. Davis, W. R., Gabbara, S., Hupe, D. & Peliska, J. A. (1998). Biochemistry, 37, 14213-14221.
15. Ennifar, E., Carpentier, P., Ferrer, J.-L., Walter, P. & Dumas, P. (2002). Acta Cryst. D58, 1262-1268.
16. Graves, D. E. & Wadkins, R. M. (1989). J. Biol. Chem. 264, 7262-7266.
17. Hou, M.-H., Robinson, H., Gao, Y.-G. & Wang, A. H.-J. (2002). Nucleic Acids Res. 30, 4910-4917.
18. Humphrey, W., Dalke, A. & Schulten, K. (1996). J. Mol. Graph. 14, 33-38.
19. Imamichi, T., Murphy, M. A., Adelsberger, J. W., Yang, J., Watkins, C. M., Berg, S. C., Baseler, M. W., Lempicki, R. A., Guo, J., Levin, J. G. & Lane, H. C. (2003). J. Virol. 77, 1011-1020.
20. Jain, S. C. & Sobell, H. M. (1972). J. Mol. Biol. 68, 1-20.
21. Jogl, G., Tao, X., Xu, Y. & Tong, L. (2001). Acta Cryst. D57, 1127-1134.
22. Kalé, L., Skeel, R., Bhandarkar, M., Brunner, R., Gursoy, A., Krawetz, N., Phillips, J., Shinozaki, A., Varadarajan, K. & Schulten, K. (1999). J. Comput. Phys. 151, 283-312.
23. Kamitori, S. & Takusagawa, F. (1994). J. Am. Chem. Soc. 116, 4154-4165.
24. Lian, C., Robinson, H. & Wang, A. H.-J. (1996). J. Am. Chem. Soc. 118, 8791-8801.
25. McRee, D. (1999). J. Struct. Biol. 125, 156-165.
26. Moews, P. C. & Kretsinger, R. H. (1975). J. Mol. Biol. 91, 201-225.
27. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
28. Parkinson, G. (1996). Acta Cryst. D52, 57-64.
29. Qu, X., Ren, J., Riccelli, P. V., Benight, A. S. & Chaires, J. B. (2003). Biochemistry, 42, 11960-11967.
30. Rill, R. L. & Hecker, K. H. (1996). Biochemistry, 35, 3525-3533.
31. Robinson, H., Gao, Y.-G., Yang, X.-L., Sanishvili, R., Jaochimiak, A. & Wang, A. H.-J. (2001). Biochemistry, 40, 5587-5592.
32. Sasaki, S. (1989). KEK Report 88-14, pp. 1-136.
33. Schäfer, M., Sheldrick, G. M., Bahner, I. & Lackner, H. (1998). Angew. Chem. Int. Ed. 37, 2381-2384.
34. Schneider, T. R. & Sheldrick, G. M. (2002). Acta Cryst. D58, 1772-1779.
35. Sheldrick, G. M. (2002). Z. Kristallogr. 217, 644-650.
36. Sheldrick, G. M., Hauptmann, H. A., Weeks, C. M., Miller, R. & Uson, I. (2001). International Tables for Crystallography, Vol. F, edited by E. Arnold & M. Rossmann, pp. 333-351. Dordrecht: Kluwer Academic Publishers.
37. Sheldrick, G. M. & Schneider, T. R. (1997). Methods Enzymol. 277, 319-343.
38. Sternglanz, H. & Bugg, C. E. (1975). Biochim. Biophys. Acta, 378, 1-11.
39. Tung, C. S. & Carter, E. S. (1994). Comput. Appl. Biosci. 10, 427-433.
40. Usón, I., Pohl, E., Schneider, T. R., Dauter, Z., Schmidt, A., Fritz, H.-J. & Sheldrick, G. M. (1999). Acta Cryst. D55, 1158-1167.
41. Wadkins, R. M., Jares-Erijman, E. A., Klement, R., Ruediger, A. & Jovin, T. J. (1996). J. Mol. Biol. 262, 53-68.
42. Wadkins, R. M. & Jovin, T. M. (1991). Biochemistry, 30, 9469-9478.
43. Wadkins, R. M., Tung, C. S., Vallone, P. M. & Benight, A. S. (2000). Arch. Biochem. Biophys. 384, 199-203.
44. Waring, M. J. (1981). Annu. Rev. Biochem. 50, 159-192.
45. Wilson, W. D., Jones, R. L., Zon, G., Scott, E. V., Banville, D. L. & Marzille, L. G. (1986). J. Am. Chem. Soc. 108, 7113-7114.
46. Yoo, H. & Rill, R. L. (2001). J. Mol. Recog. 14, 145-150.