The carbon-concentrating mechanism of the hydrothermal vent chemolithoautotroph Thiomicrospira crunogena

Journal of Bacteriology

Volumn 187, Issue 16, 2005, Pages 5761-5766

  Dobrinski, Kimberly P ^a   Longo, Dana L ^a   Scott, Kathleen M ^a  

^a UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BICARBONATE; CARBON; DISSOLVED INORGANIC CARBON; UNCLASSIFIED DRUG;

ARTICLE; AUTOTROPHY; BACTERIAL GROWTH; CARBON FIXATION; CELL LEVEL; CHEMICAL REACTION KINETICS; CHEMOLITHOAUTOTROPH; CONCENTRATION (PARAMETERS); ENERGY; GEOCHEMISTRY; HYDROTHERMAL VENT; NONHUMAN; PRIORITY JOURNAL; THIOMICROSPIRA; THIOMICROSPIRA CRUNOGENA;

BICARBONATES; CARBON; CARBON DIOXIDE; ENERGY METABOLISM; HYDROGEN-ION CONCENTRATION; OCEANS AND SEAS; PISCIRICKETTSIACEAE; SEAWATER;

THIOMICROSPIRA; THIOMICROSPIRA CRUNOGENA;

EID: 23644439946     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.187.16.5761-5766.2005     Document Type: Article

References (38)

1. Ahmad, A., J. P. Barry, and D. C. Nelson. 1999. Phylogenetic affinity of a wide, vacuolate, nitrate-accumulating Beggiatoa sp. from Monterey Canyon, California, with Thioploca spp. Appl. Environ. Microbiol. 65:270-277.
2. 2 concentrating mechanisms in cyanobacteria. Funct. Plant Biol. 29:161-173.
3. Brocks, J. J., G. A. Logan, R. Buick, and R. E. Summons. 1999. Archean molecular fossils and the early rise of eukaryotes. Science 285:1033-1036.
4. Chain, P., J. Lamerdin, F. Larimer, W. Regala, V. Lao, M. Land, L. Hauser, A. Hooper, M. Klotz, J. Norton, L. Sayavedra-Soto, D. Arciero, N. Hommes, M. Whittaker, and D. Arp. 2003. Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. J. Bacteriol. 185:2759-2773.
5. Childress, J. J. 1984. Metabolic and blood characteristics in the hydrothermal vent tube-worm Riftia pachyptila. Mar. Biol. 83:109-124.
6. 2" utilized by ribulose diphosphate carboxylase. J. Biol. Chem. 244:1081-1083.
7. Delwiche, C. F., and J. D. Palmer, 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. 13:873-882.
8. Eisenthal, R., and A. Cornish-Bowden. 1974. The direct linear plot. Biochem. J. 139:715-720.
9. 2 and upon proton-equivalent ion transport by the worm. J. Exp. Biol. 200:883-896.
10. 2 substrate specificities. Arch. Biochem. Biophys. 361:183-194.
11. Jannasch, H. W., C. O. Wirsen, D. C. Nelson, and L. A. Robertson. 1985. Thiomicrospira crunogena sp. nov., a colorless, sulfur-oxidizing bacterium from a deep-sea hydrothermal vent. Int. J. Syst. Bacteriol. 35:422-424.
12. Johnson, K. S., J. J. Childress, and C. L. Beehler. 1988. Short term temperature variability in the Rose Garden hydrothermal vent field. Deep-Sea Res. 35:1711-1722.
13. Kaneko, T., Y. Nakamura, C. P. Wolk, T. Kuritz, S. Sasamoto, A. Watanabe, M. Iriguchi, A. Ishikawa, K. Kawashima, T. Kimura, Y. Kishida, M. Kohara, M. Matsumoto, A. Matsuno, A. Muraki, N. Nakazaki, S. Shimpo, M. Sugimoto, M. Takazawa, M. Yamada, M. Yasuda, and S. Tabata. 2001. Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8:205-213.
14. 2 concentration. Planta 149:219-226.
15. Kaplan, A., R. Schwarz, J. Lieman-Hurwitz, M. Ronen-Tarazi, and L. Re-inhold. 1994. Physiological and molecular studies on the response of cyanobacteria to changes in the ambient inorganic carbon concentration, p. 469-485. In D. A. Bryant (ed.), The molecular biology of cyanobacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
16. 2 levels in the Proterozoic atmosphere estimated from analyses of individual microfossils. Nature 425:279-282.
17. Kuenen, J. G., and P. Bos. 1989. Habitats and ecological niches of chemolitho(auto)trophic bacteria, p. 117-146. In H. G. Schlegel and B. Bowien (ed.), Autotrophic bacteria. Springer-Verlag, Madison, Wis.
18. Larimer, F., P. Chain, L. Hauser, J. Lamerdin, S. Malfatti, L. Do, M. Land, D. Pelletier, J. Beatty, A. Lang, F. R. Tabita, J. L. Gibson, T. Hanson, C. Bobst, J. T. Y. Torres, C. Peres, F. Harrison, J. Gibson, and C. Harwood. 2004. Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris. Nat. Biotechnol. 22:55-61.
19. 2 system calculations, ORNL/CDIAC-105. Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tenn.
20. Muro-Pastor, M., J. C. Reyes, and F. J. Florencio. 2005. Ammonium assimilation in cyanobacteria. Photosynth. Res. 83:135-150.
21. Nakamura, Y., T. Kaneko, S. Sato, M. Mimuro, H. Miyashita, T. Tsuchiya, S. Sasamoto, A. Watanabe, K. Kawashima, Y. Kishida, C. Kiyokawa, M. Kohara, M. Matsumoto, A. Matsuno, N. Nakazaki, S. Shimpo, C. Takeuchi, M. Yamada, and S. Tabata. 2003. Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids. DNA Res. 10:137-145.
22. Omata, T., G. D. Price, M. R. Badger, M. Okamura, S. Gohta, and T. Ogawa. 1999. Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942. Proc. Natl. Acad. Sci. USA 96:13571-13576.
23. Palenik, B., B. Brahamsha, F. W. Larimer, M. Land, L. Hauser, P. Chain, J. Lamerdin, W. Regala, E. Allen, J. McCarren, I. Paulsen, A. Dufresne, F. Partensky, E. Webb, and J. Waterbury. 2003. The genome of a motile marine Synechococcus. Nature 424:1037-1042.
24. Price, G., F. Woodger, M. Badger, S. Howitt, and L. Tucker. 2004. Identification of a SulP-type bicarbonate transporter in marine cyanobacteria. Proc. Natl. Acad. Sci. USA 101:18228-18233.
25. Price, G. D., S. Maeda, T. Omata, and M. R. Badger. 2002. Modes of active inorganic carbon uptake in the cyanobacterium, Synechococcus sp. PCC7942. Funct. Plant Biol. 29:131-149.
26. 2 concentrating mechanism in several cyanobacterial strains: a review of general physiological characteristics, genes, proteins, and recent advances. Can. J. Bot. 76:973-1002.
27. Raven, J. A. 1991. Implications of inorganic carbon utilization: ecology, evolution, and geochemistry. Can. J. Bot. 69:908-923.
28. Rocap, G., F. W. Larimer, J. Lamerdin, S. Malfatti, P. Chain, N. A. Ahlgren, A. Arellano, M. Coleman, L. Hauser, W. R. Hess, Z. I. Johnson, M. Land, D. Lindell, A. F. Post, W. Regala, M. Shah, S. L. Shaw, C. Steglich, M. B. Sullivan, C. S. Ting, A. Tolonen, E. A. Webb, E. R. Zinser, and S. W. Chisholm. 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424:1042-1047.
29. Rottenberg, H. 1979. The measurement of membrane potential and ΔpH in cells, organelles, and vesicles. Methods Enzymol. 55:547-569.
30. Rye, R., P. H. Kuo, and H. D. Holland. 1995. Atmospheric carbon dioxide concentrations before 2.2 billion years ago. Nature 378:603-605.
31. Scott, K. M., M. Bright, and C. R. Fisher. 1998, The burden of independence: inorganic carbon utilization strategies of the sulphur chemoautotrophic hydrothermal vent isolate Thiomicrospira crunogena and the symbionts of hydrothermal vent and cold seep vestimentiferans. Cah. Biol. Mar. 39:379-381.
32. Shibata, M., H. Katoh, M. Sonoda, H. Ohkawa, M. Shimoyama, H. Fukuzawa, A. Kaplan, and T. Ogawa. 2002. Genes essential to sodium-dependent bicarbonate transport in cyanobacteria. J. Biol. Chem. 277:18658-18664.
33. 2 uptake systems in cyanobacteria: four systems for inorganic carbon acquisition in Synechocystis sp. strain PCC6803. Fund. Plant Biol. 29:123-129.
34. So, A. K.-C., G. S. Espie, E. B. Williams, J. M. Shively, S. Heinhorst, and G. C. Cannon. 2004. A novel evolutionary lineage of carbonic anhydrase (ε class) is a component of the carboxysome shell. J. Bacteriol. 186:623-630.
35. Tortell, P. D. 2000. Evolutionary and ecological perspectives on carbon acquisition in phytoplankton. Limnol. Oceanogr. 45:744-750.
36. 2-responsive expression and gene organization of three ribulose-1,5-bisphosphate carboxylase/oxygenase enzymes and carboxysomes in Hydrogenovibrio marinus strain MH-110. J. Bacteriol. 186:5685-5691.
37. 2 in seawater: equilibrium, kinetics, isotopes. Elsevier, New York, N.Y.
38. Zilberstein, D., V. Agmon, S. Schuldiner, and E. Padan. 1984. Escherichia coli intracellular pH, membrane potential, and cell growth. J. Bacteriol. 158:246-252.