Genome-wide screening for target regions of histone deacetylases in cardiomyocytes

Circulation Research

Volumn 97, Issue 3, 2005, Pages 210-218

  Kaneda, Ruri ^a   Ueno, Shuichi ^a   Yamashita, Yoshihiro ^a   Choi, Young Lim ^a   Koinuma, Koji ^a   Takada, Shuji ^a   Wada, Tomoaki ^a   Shimada, Kazuyuki ^a   Mano, Hiroyuki ^a,b  

^a JICHI MEDICAL UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Cardiomyocyte; Epigenetics; Histone acetylation; Trichostatin A

Indexed keywords

BUTYRIC ACID; CARDIOTROPHIN 1; DNA; HISTONE DEACETYLASE; HISTONE H3; TRICHOSTATIN A;

ACETYLATION; ARTICLE; CHROMATIN; ENZYME ACTIVITY; EPIGENETICS; GENETIC SCREENING; GENOMICS; HEART DISEASE; HEART FAILURE; HEART HYPERTROPHY; HEART MUSCLE CELL; IMMUNOPRECIPITATION; NEWBORN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT; SCREENING;

ACETYLATION; ANIMALS; ANIMALS, NEWBORN; ATRIAL NATRIURETIC FACTOR; BUTYRATES; CELL LINE; CHROMATIN; EPIGENESIS, GENETIC; GENOME; HEART; HISTONE DEACETYLASES; HISTONES; HYDROXAMIC ACIDS; MYOCYTES, CARDIAC; RATS;

EID: 23344451466     PISSN: 00097330     EISSN: None     Source Type: Journal    
DOI: 10.1161/01.RES.0000176028.18423.07     Document Type: Article

References (26)

1. Baylin SB, Herman JG. DNA hypermethylation in tumorigenesis: epigenetics joins genetics. Trends Genet. 2000;16:168-174.
2. van Leeuwen F, Gottschling DE. Genome-wide histone modifications: gaining specificity by preventing promiscuity. Curr Opin Cell Biol. 2002;14:756-762.
3. Burgess-Beusse B, Farrell C, Gaszner M, Litt M, Mutskov V, Recillas-Targa F, Simpson M, West A, Felsenfeld G. The insulation of genes from external enhancers and silencing chromatin. Proc Natl Acad Sci U S A. 2002;99:16433-16437.
4. Carrozza MJ, Utley RT, Workman JL, Cote J. The diverse functions of histone acetyltransferase complexes. Trends Genet. 2003;19:321-329.
5. Verdin E, Dequiedt F, Kasler HG. Class II histone deacetylases: versatile regulators. Trends Genet. 2003;19:286-293.
6. Gusterson RJ, Jazrawi E, Adcock IM, Latchman DS. The transcriptional co-activators CREB-binding protein (CBP) and p300 play a critical role in cardiac hypertrophy that is dependent on their histone acetyltransferase activity. J Biol Chem. 2003;278:6838-6847.
7. Iezzi S, Di Padova M, Serra C, Caretti G, Simone C, Maklan E, Minetti G, Zhao P, Hoffman EP, Puri PL, Sartorelli V. Deacetylase inhibitors increase muscle cell size by promoting myoblast recruitment and fusion through induction of follistatin. Dev Cell. 2004;6:673-684.
8. Zhang CL, McKinsey TA, Chang S, Antos CL, Hill JA, Olson EN. Class II histone deacetylases act as signal-responsive repressers of cardiac hypertrophy. Cell. 2002;110:479-488.
9. Kook H, Lepore JJ, Gitler AD, Lu MM, Wing-Man Yung W, Mackay J, Zhou R, Ferrari V, Gruber P, Epstein JA. Cardiac hypertrophy and histone deacetylase-dependent transcriptional repression mediated by the atypical homeodomain protein Hop. J Clin Invest. 2003;112:863-871.
10. Antos CL, McKinsey TA, Dreitz M, Hollingsworth LM, Zhang CL, Schreiber K, Rindt H, Gorczynski RJ, Olson EN. Dose-dependent blockade to cardiomyocyte hypertrophy by histone deacetylase inhibitors. J Biol Chem. 2003;278:28930- 28937.
11. Kuwahara K, Saito Y, Ogawa E, Takahashi N, Nakagawa Y, Naruse Y, Harada M, Hamanaka I, Izumi T, Miyamoto Y, Kishimoto I, Kawakami R, Nakanishi M, Mori N, Nakao K. The neuron-restrictive silencer element-neuron-restrictive silencer factor system regulates basal and endothelin 1-inducible atrial natriuretic peptide gene expression in ventricular myocytes. Mol Cell Biol. 2001;21:2085-2097.
12. Kaneda R, Toyota M, Yamashita Y, Koinuma K, Choi YL, Ota J, Kisanuki H, Ishikawa M, Takada S, Shimada K, Mano H. High-throughput screening of genome fragments bound to differentially acetylated histones. Genes Cells. 2004;9:1167-1174.
13. Yamamoto K, Dang QN, Kelly RA, Lee RT. Mechanical strain suppresses inducible nitric-oxide synthase in cardiac myocytes. J Biol Chem. 1998;273:11862-11866.
14. Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res. 2002;12:656-664.
15. Rat Genome Sequencing Project Consortium. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004;428:493-521.
16. Marks AR. Cardiac intracellular calcium release channels: role in heart failure. Circ Res. 2000;87:8-11.
17. Kapinya KJ, Harms U, Harms C, Blei K, Katchanov J, Dirnagl U., Hortnagl H. Role of NAD(P)H:quinone oxidoreductase in the progression of neuronal cell death in vitro and following cerebral ischaemia in vivo. J Neurochem. 2003;84:1028-1039.
18. Shawber C, Nofziger D, Hsieh JJ, Lindsell C, Bogler O, Hayward D, Weinmaster G. Notch signaling inhibits muscle cell differentiation through a CBF1-independent pathway. Development. 1996;122:3765-3773.
19. Henderson C, Brancolini C. Apoptotic pathways activated by histone deacetylase inhibitors: implications for the drug-resistant phenotype. Drug Resist Updat. 2003;6:247-256.
20. Chen QM, Tu VC, Wu Y, Bahl JJ. Hydrogen peroxide dose dependent induction of cell death or hypertrophy in cardiomyocytes. Arch Biochem Biophys. 2000;373:242-248.
21. Onan D, Pipolo L, Yang E, Hannan RD, Thomas WG. Urotensin II promotes hypertrophy of cardiac myocytes via mitogen-activated protein kinases. Mol Endocrinol 2004;18:2344-2354.
22. Fingert JH, Heon E, Liebmann JM, Yamamoto T, Craig JE, Rait J, Kawase K, Hoh ST, Buys YM, Dickinson J, Hockey RR, Williams-Lyn D, Trope G, Kitazawa Y, Ritch R, Mackey DA, Alward WL, Sheffield VC, Stone EM. Analysis of myocilin mutations in 1703 glaucoma patients from five different populations. Hum Mol Genet. 1999;8:899-905.
23. Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR, Schreiber SL, Lander ES. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell. 2005;120:169-181.
24. Weinmann AS, Yan PS, Oberley MJ, Huang TH, Farnham PJ. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev. 2002;16:235-244.
25. Turner BM, O'Neill LP. Histone acetylation in chromatin and chromosomes. Semin Cell Biol. 1995;6:229-236.
26. Strahl BD, Allis CD. The language of covalent histone modifications. Nature. 2000;403:41-45.