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Volumn 33, Issue SUPPL. 2, 2005, Pages

EVAcon: A protein contact prediction evaluation service

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; AMINO ACID;

EID: 23144467844     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki411     Document Type: Article
Times cited : (18)

References (24)
  • 1
    • 0028295169 scopus 로고
    • Correlated mutations and residue contacts in proteins
    • Gobel,U., Sander,C., Scheneider,R. and Valencia,A. (1994) Correlated mutations and residue contacts in proteins. Proteins, 18, 309-317.
    • (1994) Proteins , vol.18 , pp. 309-317
    • Gobel, U.1    Sander, C.2    Scheneider, R.3    Valencia, A.4
  • 2
    • 0035663988 scopus 로고    scopus 로고
    • Prediction of contact maps with neural networks and correlated mutations
    • Fariselli,P., Olmea,O., Valencia,A. and Casadio,R. (2001) Prediction of contact maps with neural networks and correlated mutations. Protein Eng., 14, 835-843.
    • (2001) Protein Eng. , vol.14 , pp. 835-843
    • Fariselli, P.1    Olmea, O.2    Valencia, A.3    Casadio, R.4
  • 3
    • 0041719954 scopus 로고    scopus 로고
    • Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners
    • Pollastri,G. and Baldi,P. (2002) Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners. Bioinformatics, 18 (Suppl. 1), 62-70.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1 , pp. 62-70
    • Pollastri, G.1    Baldi, P.2
  • 4
    • 0042721397 scopus 로고    scopus 로고
    • Predicting interresidue contacts using templates and pathways
    • Shao,Y. and Bystroff,C. (2003) Predicting interresidue contacts using templates and pathways. Proteins, 53 (Suppl. 6), 497-502.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 497-502
    • Shao, Y.1    Bystroff, C.2
  • 5
    • 24744453057 scopus 로고    scopus 로고
    • Striped sheets and protein contact prediction
    • MacCallum,R.M. (2004) Striped sheets and protein contact prediction. Bioinformatics, 20 (Suppl. 1), 224-231.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1 , pp. 224-231
    • MacCallum, R.M.1
  • 6
    • 3543089710 scopus 로고    scopus 로고
    • A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments
    • Dekker,J.P., Fodor,A., Aldrich,R.W. and Yellen,G. (2004) A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments. Bioinformatics, 20, 1565-1572.
    • (2004) Bioinformatics , vol.20 , pp. 1565-1572
    • Dekker, J.P.1    Fodor, A.2    Aldrich, R.W.3    Yellen, G.4
  • 7
    • 0242299187 scopus 로고    scopus 로고
    • Predictions without templates: New folds, secondary structure, and contacts in CASP5
    • Aloy,P., Stark,A., Hadley,C. and Russell,R.B. (2003) Predictions without templates: New folds, secondary structure, and contacts in CASP5. Proteins, 53 (Suppl. 6), S436-S456.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6
    • Aloy, P.1    Stark, A.2    Hadley, C.3    Russell, R.B.4
  • 10
    • 0033537993 scopus 로고    scopus 로고
    • GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
    • Jones,D.T. (1999) GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences. J. Mol. Biol., 287, 797-815.
    • (1999) J. Mol. Biol. , vol.287 , pp. 797-815
    • Jones, D.T.1
  • 11
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • Shi,J., Blundell,T.L. and Mizuguchi,K. (2001) FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol., 310, 243-257.
    • (2001) J. Mol. Biol. , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3
  • 12
    • 0034780030 scopus 로고    scopus 로고
    • Pcons: A neural-network-based consensus predictor that improves fold recognition
    • Lundström,J., Rychlewski,L., Bujnicki,J. and Elofsson,A. (2001) Pcons: A neural-network-based consensus predictor that improves fold recognition. Protein Sci., 10, 2354-2362.
    • (2001) Protein Sci. , vol.10 , pp. 2354-2362
    • Lundström, J.1    Rychlewski, L.2    Bujnicki, J.3    Elofsson, A.4
  • 13
    • 0033550256 scopus 로고    scopus 로고
    • Effective use of sequence correlation and conservation in fold recognition
    • Olmea,O., Rost,B. and Valencia,A. (1999) Effective use of sequence correlation and conservation in fold recognition. J. Mol. Biol., 295, 1221-1239.
    • (1999) J. Mol. Biol. , vol.295 , pp. 1221-1239
    • Olmea, O.1    Rost, B.2    Valencia, A.3
  • 14
    • 0032613288 scopus 로고    scopus 로고
    • Ab initio folding of proteins using restraints derived from evolutionary information
    • Ortiz,A.R., Kolinski,A., Rotkiewicz,P., Ilkowski,B. and Skolnick,J. (1999) Ab initio folding of proteins using restraints derived from evolutionary information. Proteins, 37 (Suppl. 3), 177-185.
    • (1999) Proteins , vol.37 , Issue.SUPPL. 3 , pp. 177-185
    • Ortiz, A.R.1    Kolinski, A.2    Rotkiewicz, P.3    Ilkowski, B.4    Skolnick, J.5
  • 15
    • 0032571390 scopus 로고    scopus 로고
    • Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments
    • Ortiz,A.R., Kolinski,A. and Skolnick,J. (1998) Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments. J. Mol. Biol., 277, 419-448.
    • (1998) J. Mol. Biol. , vol.277 , pp. 419-448
    • Ortiz, A.R.1    Kolinski, A.2    Skolnick, J.3
  • 18
    • 0025978283 scopus 로고
    • Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors
    • Holm,L. and Sander,C. (1991) Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors. J. Mol. Biol., 218, 183-194.
    • (1991) J. Mol. Biol. , vol.218 , pp. 183-194
    • Holm, L.1    Sander, C.2
  • 19
    • 0030821675 scopus 로고    scopus 로고
    • Correlated mutations contain information about protein-protein interaction
    • Pazos,F., Helmer-Citterich,M., Ausiello,G. and Valencia,A. (1997) Correlated mutations contain information about protein-protein interaction. J. Mol. Biol., 271, 511-523.
    • (1997) J. Mol. Biol. , vol.271 , pp. 511-523
    • Pazos, F.1    Helmer-Citterich, M.2    Ausiello, G.3    Valencia, A.4
  • 20
    • 3242889054 scopus 로고    scopus 로고
    • Wurst: A protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices
    • Torda,A.E., Procter,J.B. and Huber,T. (2004) Wurst: A protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices. Nucleic Acids Res., 32, W532-W535.
    • (2004) Nucleic Acids Res. , vol.32
    • Torda, A.E.1    Procter, J.B.2    Huber, T.3
  • 21
    • 0032438987 scopus 로고    scopus 로고
    • Hidden Markov models for detecting remote protein homologies
    • Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
    • (1998) Bioinformatics , vol.14 , pp. 846-856
    • Karplus, K.1    Barrett, C.2    Hughey, R.3
  • 22
    • 0242362161 scopus 로고    scopus 로고
    • Combining local-structure, fold-recognition, and new fold methods for protein structure prediction
    • Karplus,K., Karchin,R., Draper,J., Casper,J., Mandel-Gutfreund,Y., Diekhans,M. and Hughey,R. (2003) Combining local-structure, fold-recognition, and new fold methods for protein structure prediction. Proteins, 53 (Suppl. 6), 491-496.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 491-496
    • Karplus, K.1    Karchin, R.2    Draper, J.3    Casper, J.4    Mandel-Gutfreund, Y.5    Diekhans, M.6    Hughey, R.7
  • 23
    • 0034595501 scopus 로고    scopus 로고
    • Enhanced genome annotation using structural profiles in the program 3D-PSSM
    • Kelley,L.A., MacCallum,R.M. and Sternberg,M.J. (2000) Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol., 299, 499-520.
    • (2000) J. Mol. Biol. , vol.299 , pp. 499-520
    • Kelley, L.A.1    MacCallum, R.M.2    Sternberg, M.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.