Identification of a large cluster of coiled coil-nucleotide binding site-leucine rich repeat-type genes from the Rps1 region containing Phytophthora resistance genes in soybean

Theoretical and Applied Genetics

Volumn 111, Issue 1, 2005, Pages 75-86

  Bhattacharyya, M K ^a,b   Narayanan, N N ^a,e   Gao, H ^a   Santra, D K ^a,f   Salimath, S S ^b,f   Kasuga, T ^b,g   Liu, Y ^b,h   Espinosa, B ^b   Ellison, L ^a   Marek, L ^a   Shoemaker, R ^a,c   Gijzen, M ^d   Buzzell, R I ^d  

^a IOWA STATE UNIVERSITY   (United States)

^b PLANT BIOLOGY DIVISION   (United States)

^c U S DEPARTMENT OF AGRICULTURE   (United States)

^d AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^e BAYLOR COLLEGE OF MEDICINE   (United States)

^f WASHINGTON STATE UNIVERSITY   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h UNIVERSITY OF LOUISVILLE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; DISEASES; DNA; GENES; PROTEINS;

CDNA; DISEASE RESISTANT GENES; HYPOCOTYL TISSUES; MOLECULAR MARKERS;

CROPS;

COMPLEMENTARY DNA; PRIMER DNA;

AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; DNA SEQUENCE; DUPLICATE GENE; GENE; GENE STRUCTURE; GENETICS; INNATE IMMUNITY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PHYTOPHTHORA; PLANT DISEASE; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; SOYBEAN;

AMINO ACID SEQUENCE; BASE SEQUENCE; BLOTTING, SOUTHERN; CHROMOSOME MAPPING; DNA PRIMERS; DNA, COMPLEMENTARY; GENE COMPONENTS; GENES, DUPLICATE; GENES, PLANT; IMMUNITY, NATURAL; MOLECULAR SEQUENCE DATA; PHYTOPHTHORA; PLANT DISEASES; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SOYBEANS;

ALLELES; GENES; NUCLEIC ACIDS; PROTEINS; SOY BEANS;

GLYCINE MAX; MEDICAGO; MEDICAGO TRUNCATULA; PHYTOPHTHORA; PHYTOPHTHORA SOJAE; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. GLYCINEA;

EID: 21444449723     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-1993-9     Document Type: Article

References (50)

1. Anderson PA, Lawrence GJ, Morrish BC, Ayliffe MA, Finnegan EJ, Ellis JG (1997) Inactivation of the flax rust resistance gene M associated with loss of a repeated unit within the leucine-rich repeat coding region. Plant Cell 9:641-651
2. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-218
3. Ashfield T, Bocian A, Held D, Henk AD, Marek LF, Danesh D, Penuela S, Meksem K, Lightfoot DA, Young ND, Shoemaker RC, Innes RW (2003) Genetic and physical localization of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS-LRR genes. Mol Plant Microbe Interact 16:817-826
4. Ashfield T, Ong LE, Nobuta K, Schneider CM, Innes RW (2004) Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell 16:309-318
5. Bhattacharyya MK (2001) Construction of cDNA libraries. In: Brown TA (ed) Essential molecular biology: a practical approach, vol 2. Oxford University Press, Oxford, pp 42-62
6. Bhattacharyya MK, Ward EWB (1986) Expression of gene-specific and age-related resistance and the accumulation of glyceollin in soybean leaves infected with Phytophthora megasperma f.sp. glycinea. Physiol Mol Plant Pathol 29:105-113
7. Bhattacharyya MK, Gonzales RA, Kraft M, Buzzell RI (1997) A copia-like retrotransposon Tgm r closely linked to the Rps1-k allele that confers race-specific resistance of soybean to Phylophthora sojae. Plant Mol Biol 34:255-264
8. Cooley MB, Pathirana S, Wu HJ, Kachroo P, Klessig DF (2000) Members of the Arabidopsis HRT/RPP8 family of resistance genes confer resistance to both viral and oomycete pathogens. Plant Cell 12:663-676
9. Dangl JL, Jones JD (2001) Plant pathogens and integrated defence responses to infection. Nature 411:826-833
10. Dixon MS, Jones DA, Keddie JS, Thomas CM, Harrison K, Jones JD (1996) The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84:451-459
11. Dixon MS, Hatzixanthis K, Jones DA, Harrison K, Jones JD (1998) The tomato Cf-5 disease resistance gene and six homologs show pronounced allelic variation in leucine-rich repeat copy number. Plant Cell 10:1915-1925
12. Flor HH (1955) Host-parasite interaction in flax rust - its genetics and other implications. Phytopathology 45:680-685
13. Gangloff S, Zou H, Rothstein R (1996) Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast. EMBO J 15:1715-1725
14. Graham MA, Marek LF, Shoemaker RC (2002) Organization, expression and evolution of a disease resistance gene cluster in soybean. Genetics 162:1961-1977
15. Hayes AJ, Jeong SC, Gore MA, Yu YG, Buss GR, Tolin SA, Saghai Maroof MA (2004) Recombination within a nucleotide-binding-site/leucine-rich-repeat gene cluster produces new variants conditioning resistance to soybean mosaic virus in soybeans. Genetics 166:493-503
16. Hoffman T, Schmidt JS, Zheng X, Bent AF (1999) Isolation of ethylene-insensitive soybean mutants that are altered in pathogen susceptibility and gene-for-gene disease resistance. Plant Physiol 119:935-949
17. Hulbert SH, Webb CA, Smith SM, Sun Q (2001) Resistance gene complexes: evolution and utilization. Annu Rev Phytopathol 39:285-312
18. Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are conserved and clustered in soybean. Proc Natl Acad Sci USA 93:11746-11750
19. Kasuga T, Salimath SS, Shi J, Gijzen M, Buzzell RI, Bhattacharyya MK (1997) High resolution genetic and physical mapping of molecular markers linked to the Phytophthora resistance gene Rps1-k in soybean. Mol Plant Microbe Interact 10:1035-1044
20. Kim UJ, Birren BW, Slepak T, Mancino V, Boysen C, Kang HL, Simon MI, Shizuya H (1996) Construction and characterization of human bacterial artificial chromosome library. Genomics 34:213-218
21. Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4:403-410
22. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
23. Leister D, Ballvora A, Salamini F, Gebhardt C (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nature Genet 14:421-429
24. Leitz RA, Hartman GL, Pedersen WL, Nickell CD (2000) Races of Phytophthora sojae on soybean in Illinois. Plant Dis 84:487
25. Luck JE, Lawrence GJ, Dodds PN, Shepherd KW, Ellis JG (2000) Regions outside of the leucine-rich repeats of flax rust resistance proteins play a role in specificity determination. Plant Cell 12:13671-377
26. Lupas A (1997) Predicting coiled-coil regions in proteins. Curr Opin Struct Biol 7:388-393
27. Marek LF, Shoemaker RC (1997) BAC contig development by fingerprint analysis in soybean. Genome 40:420-427
28. Martin GB, Bogdanove AJ, Sessa G (2003) Understanding the functions of plant disease resistance proteins. Ann Rev Plant Biol 54:23-61
29. McDowell JM, Dhandaydham M, Long TA, Aarts MG, Goff S, Holub EB, Dangl JL (1998) Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10:1861-1874
30. Meyers BC, Chin DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW (1998) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell 10:1817-1832
31. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
32. Pan Q, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50:203-213
33. Parniske M, Jones JD (1999) Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family. Proc Natl Acad Sci USA 96:5850-5855
34. Parniske M, Hammond-Kosack KE, Golstein C, Thomas CM, Jones DA, Harrison K, Wulff BB, Jones JD (1997) Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91:821-832
35. Richly E, Kurth J, Leister D (2002) Mode of amplification and reorganization of resistance genes during recent Arabidopsis thaliana evolution. Mol Biol Evol 19:76-84
36. Salimath SS, Bhattacharyya MK (1999) Generation of a soybean BAC library, and identification of DNA sequences tightly linked to the Rps1-k disease resistance gene. Theor Appl Genet 98:712-720
37. Salmeron JM, Oldroyd GED, Rommens CMT, Scofield SR, Kim H-S, Lavelle DT, Dahlbeck D, Staskawicz BJ (1996) Tomato Prf is a member of the leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster. Cell 86:123-133
38. Sandhu D, Gao H, Cianzio S, Bhattacharyya MK (2004) Deletion of a disease resistance nucleotide-binding-site leucine-rich-repeat-like sequence is associated with the loss of the Phytophthora resistance gene Rps4 in soybean. Genetics 168:2157-2167
39. Schmitthenner AF (1989) Phytophthora rot. In: Sinclair JB, Backman PA (eds) Compendium of soybean diseases. APS, St. Paul, pp 35-38
40. Schmitthenner AF, Hobe M, Bhat RG (1994) Phytophthora sojae races in Ohio over a 10-year interval. Plant Dis 78:269-276
41. Shan W, Cao M, Leung D, Tyler BM (2004) The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b. Mol Plant Microbe Interact 17:394-403
42. Simons G, Groenendijk J, Wijbrandi J, Reijans M, Groenen J, Diergaarde P, Van der Lee T, Bleeker M, Onstenk J, de Both M, Haring M, Mes J, Cornelissen B, Zabeau M, Vos P (1998) Dissection of the fusarium I2 gene cluster in tomato reveals six homologs and one active gene copy. Plant Cell 10:1055-1068
43. Song W-Y, Pi L-Y, Wang G-L, Gardner J, Holsten T, Ronald PC (1997) Evolution of the rice Xa21 disease resistance gene family. Plant Cell 9:1279-1287
44. Tyler BM (2002) Molecular basis of recognition between phytophthora pathogens and their hosts. Annu Rev Phytopathol 40:137-167
45. Ward EWB, Lazarovits G, Unwin CH, Buzzell RI (1979) Hypocotyl reactions and glyceollin in soybeans inoculated with zoospores of Phytophthora megasperma var. sojae. Phytopathology 69:951-955
46. Ward EWB, Stössel P, Lazarovits G (1981) Similarities between age-related and race-specific resistance of soybean hypocotyls to Phytophthora megasperma var. sojae. Phytopathology 71:504-508
47. Wei F, Gobelman-Werner K, Morroll SM, Kurth J, Mao L, Wing R, Leister D, Schulze-Lefert P, Wise RP (1999) The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics 153:1929-1948
48. White JL, Kaper JM (1989) A simple method for detection of viral satellite RNAs in small plant tissue samples. J Virol Methods 23:83-94
49. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B (1994) The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Cell 78:1101-1115
50. Wrather JA, Stienstra WC, Koenning SR (2001) Soybean disease loss estimates for the United States from 1996 to 1998. Can J Plant Pathol 23:122-131