A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that confers race-specific resistance of soybean to Phytophthora sojae

Plant Molecular Biology

Volumn 34, Issue 2, 1997, Pages 255-264

  Bhattacharyya, Madan K ^a   Gonzales, Robert A ^a   Kraft, Michelle ^c   Buzzell, Richard I ^b  

^a PLANT BIOLOGY DIVISION   (United States)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^c NONE

Author keywords

Cosmid library; Insertional mutagenesis; RFLP based screening; T vector; Transactivation

Indexed keywords

ALLELE; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CHROMOSOME MAP; COSMID; GENE; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOME; INNATE IMMUNITY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYTOPHTHORA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RETROPOSON; SOYBEAN; SPECIES DIFFERENCE;

ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMOSOME MAPPING; COSMIDS; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; IMMUNITY, NATURAL; LINKAGE (GENETICS); MOLECULAR SEQUENCE DATA; PHYTOPHTHORA; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RETROELEMENTS; SOYBEANS; SPECIES SPECIFICITY;

GLYCINE MAX; PHYTOPHTHORA; PHYTOPHTHORA SOJAE;

EID: 0031149435     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1005851623493     Document Type: Article

References (49)

1. Bhattacharyya MK, Ward EWB: Expression of gene-specific and age-related resistance and the accumulation of glyceollin in soybean leaves infected with Phytophthora megasperma f. sp. glycinea. Physiol Mol Plant Path 29: 105-113 (1986).
2. Bi Y-A, Laten HM: Sequence analysis of a cDNA containing the gag and prot regions of the soybean retrovirus-like element, SIRE-1. Plant Mol Biol 30: 1315-1319 (1996).
3. Boeke JD, Garfinkel DJ, Styles CA, Fink GR: Ty elements transpose through an RNA intermediate. Cell 40: 491-500 (1985).
4. Camirand A, St-Pierre B, Marineau C, Brisson N: Occurrence of a copia-like transposable element in one of the introns of the potato starch phosphorylase gene. Mol Gen Genet 224: 33-39 (1990).
5. Canaday J, Guillemaut P, Weil J-H: The nucleotide sequences of the initiator transfer RNAs from bean cytoplasm and chloroplasts. Nucl Acids Res 8: 999-1008 (1980).
6. Casacuberta JM, Vernhettes S, Grandbastien M-A: Sequence variability within the tobacco retrotransposon Tnt1 population. EMBO J 14: 2670-2678 (1995).
7. de Mercoyrol L, Corda Y, Job C, Job D: Accuracy of wheat-germ RNA polymerase II. General enzymatic properties and effect of template conformational transition from right-handed B-DNA to left-handed Z-DNA. Eur J Biochem 206: 49-58 (1992).
8. Diers BW, Mansur L, Imsande J, Shoemaker RC: Mapping Phytophthora resistance loci in soybean with restriction fragment length polymorphism markers. Crop Sci 32: 377-383 (1992).
9. Flavell AJ: Retroelements, reverse transcriptase and evolution. Comp Biochem Physiol 110B: 3-15 (1995).
10. Flavell AJ, Dunbar E, Anderson R, Pearce SR, Hartley R, Kumar A: Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucl Acids Res 20: 3639-3644 (1992).
11. Gabriel A, Willems M, Mules EH, Boeke JD: Replication infidelity during a single cylce of Ty1 retrotransposition. Proc Natl Acad Sci USA 93: 7767-7771 (1996).
12. Grandbastien M-A: Retroelements in higher plants. Trends Genet 8: 103-108 (1992).
13. Grandbastien M-A, Spielmann A, Caboche M: Tnt 1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337: 376-380 (1989).
14. Hirochika H: Activation of tobacco retrotransposons during tissue culture. EMBO J 12: 2521-2528 (1993).
15. Hirochika H, Hirochika R: Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn J Genet 68: 35-46 (1993).
16. Hirochika H, Otsuki H: Extrachromosomal circular forms of the tobacco retrotransposon Tto1. Gene 165: 229-232 (1995).
17. Hu W, Das OP, Messing J: Zeon-1, a member of a new maize retrotransposon family. Mol Gen Genet 248: 471-480 (1995).
18. Jin Y-K, Bennetzen JL: Structure and coding properties of Bs1, a maize retrovirus-like transposon. Proc Natl Acad Sci USA 86: 6235-6239 (1989).
19. Johns MA, Babcock MS, Fuerstenberg SM, Fuerstenberg SI, Freeling M, Simpson RB: An unusually compact retrotransposon in maize. Plant Mol Biol 12: 633-642 (1989).
20. Kamm A, Doudrick RL, Heslop-Harrison JS, Schmidt T: The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. Proc Natl Acad Sci USA 93: 2708-2713 (1996).
21. Knoop V, Unseld M, Marienfeld J, Brandt P, Sünkel S, Ullrich H, Brennicke A: copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial geneome of Arabidopsis thaliana. Genetics 142: 579-585 (1996).
22. Konieczny A, Voytas DF, Cummings MP, Ausubel FM: A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127: 801-809 (1991).
23. Laten HM, Morris RO: SIRE-1, a long interspersed repetitive DNA element from soybean with weak sequence similarity to retrotransposons: initial characterization and partial sequence. Gene 134: 153-159 (1993).
24. Lee D, Ellis THN, Turner L, Hellens RP, Cleary WG: A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis. Plant Mol Biol 15: 707-722 (1990).
25. Leeton PRJ, Smyth DR: An abundant LINE-like element amplified in the genome of Lilium speciosum. Mol Gen Genet 237: 97-104 (1993).
26. Lucas H, Feuerbach F, Kunert K, Grandbastien M-A, Caboche M: RNA-mediated transposition of the tobacco retrotransposon Tntl in Arabidopsis thaliana. EMBO J 14: 2364-2373 (1995).
27. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1982).
28. Manninen I, Schulman AH: BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol Biol 22: 829-846 (1993).
29. Moore G, Lucas H, Batty N, Flavell R: A family of retrotransposons and associated genomic variation in wheat. Genomics 10: 461-468 (1991).
30. Mount SM, Rubin GM: Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral proteins. Mol Cell Biol 5: 1630-1638 (1985).
31. Pélissier T, Tutois S, Deragon JM, Tourmente S, Genestier S, Picard G: Athila, a new retroelement from Arabidopsis thaliana. Plant Mol Biol 29: 441-452 (1995).
32. Preston BD: Error-prone retrotransposition: rime of the ancient mutators. Proc Natl Acad Sci USA 93: 7427-7431 (1996).
33. Preston BD, Dougherty JP: Mechanisms of retroviral mutation. Trends Microbiol 4: 16-21 (1996).
34. Purugganan MD, Wessler SR: Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon. Proc Natl Acad Sci USA 91: 11 674-11 678 (1994).
35. Rhodes PR, Vodkin LO: Organization of the Tgm family of transposable elements in soybean. Genetics 120: 597-604 (1988).
36. Schmitthenner AF: Phytophthorarot. In: Sinclair JB, Backman PA (eds) Compendium of Soybean Diseases, pp. 35-38. APS Press, St. Paul, MN (1989).
37. Schwarz-Sommer Z, Leclercq L, Göbel E, Saedler H: Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons. EMBO J 6: 3873-3880 (1987).
38. Smyth DR, Kalitsis P, Joseph JL, Sentry JW: Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila. Proc Natl Acad Sci USA 86: 5015-5019 (1989).
39. VanderWiel P, Voytas DF, Wendel JF: Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J Mol Evol 36: 429-447 (1993).
40. Vegh Z, Vincze E, Kadirov R, Tóth G, Kiss GB: The nucleotide sequence of a nodule-specific gene, Nms-25 of Medicago saliva: its primary evolution via exon-shuffling and retrotransposon-mediated DNA rearrangements. Plant Mol Biol 15: 295-306 (1990).
41. Vodkin LO: Plant transposable elements: potential application for gene tagging in soybean. In: Verma DPS, Shoemaker RC (eds) Soybean: Genetics, Molecular Biology and Biotechnology, pp. 69-89. CAB International Press, Wallingford, UK (1996).
42. Voytas DF, Ausubel FM: A copia-like transposable element family in Arabidopsis thaliana. Nature 336: 242-244 (1988).
43. Voytas DF, Cummings MP, Konieczny A, Ausubel FM, Rodermel SR: copia-like retrotransposons are ubiquitous among plants. Proc Natl Acad Sci USA 89: 7124-7128 (1992).
44. Ward EWB, Lazarovits G, Unwin CH, Buzzell RI: Hypocotyl reactions and glyceollin in soybeans inoculated with zoospores of Phytophthora megasperma var. sojae. Phytopathology 69: 951-955 (1979).
45. White JL, Kaper JM: A simple method for detection of viral satellite RNAs in small plant tissue samples. J Virol Meth 23: 83-94 (1989).
46. White SE, Habera LF, Wessler SR: Retrotransposons in the flanking regions of normal plant genes: A role for copia-like elements in the evolution of gene structure and expression. Proc Natl Acad Sci USA 91: 11 792-11 796 (1994).
47. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acid Res 18: 6531-6535 (1990).
48. Wright DA, KE N, Smalle J, Hauge BM, Goodman HM, Voytas DF: Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana. Genetics 142: 569-578 (1996).
49. Xu H, Boeke JD: Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: analysis of mini-Ty1 elements. Mol Cell Biol 10: 2695-2702 (1990).