Analysis of cyanobacterial pigments and proteins by electrophoretic and chromatographic methods

Analytical and Bioanalytical Chemistry

Volumn 382, Issue 3, 2005, Pages 559-569

  Colyer, Christa L ^a   Klinkade, Christopher S ^b   Viskari, Pretti J ^c   Landers, James P ^c  

^a WAKE FOREST UNIVERSITY   (United States)

^b NOAA EARTH SYSTEM RESEARCH LABORATORY   (United States)

^c UNIVERSITY OF VIRGINIA   (United States)

Author keywords

Bilins; Chromatography; Cyanobacteria; Ectoenzymes; Electrophoresis; Linker peptides; Phycobiliproteins; Phycobilisomes

Indexed keywords

BILINS; CYANOBACTERIAL PIGMENTS; ECTOENZYMES; LINKER PEPTIDES; PHYCOBILIPROTEINS; PHYCOBILISOMES;

BACTERIA; CHLOROPHYLL; CHROMATOGRAPHY; CHROMOPHORES; ELECTROPHORESIS; FLUORESCENCE; GELS; LASER APPLICATIONS;

PROTEINS;

PIGMENT; PROTEIN;

CAPILLARY ELECTROPHORESIS; CHEMISTRY; CHROMATOGRAPHY; CYANOBACTERIUM; METHODOLOGY; REVIEW; SENSITIVITY AND SPECIFICITY;

CHROMATOGRAPHY; CYANOBACTERIA; ELECTROPHORESIS, CAPILLARY; PIGMENTS, BIOLOGICAL; PROTEINS; SENSITIVITY AND SPECIFICITY;

CELLULAR ORGANISMS; CYANOBACTERIA; CYANOBACTERIUM (GENUS); PROKARYOTA;

EID: 21244461157     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-004-3020-4     Document Type: Review

References (88)

1. Bryant DA (1994) The molecular biology of cyanobacteria. Kluwer Academic, Dordrecht
2. Rothschild LJ, Mancinelli RL (1990) Nature 345:710-712
3. Raven PH, Evert RF, Eichhorn SE (1992) Biology of plants. Worth Publishers, New York
4. Sournia A (1970) Ann Biol 9:63-76
5. Whitton BA (1973) In: Carr NO, Whitton BA (eds) The biology of blue-green algae. Blackwell, Oxford, pp 353-367
6. Drews G, Weckesser J (1982) In: Carr NG, Whitton BA (eds) The biology of cyanobacteria. University of California Press, Berkeley, chap 13
7. Jensen TE (1993) In: Berner T (ed) Ultrastructure of microalgae. CRC Press, Boca Raton, chap 1
8. Stanier (Cohen-Bazire) G (1988) In: Packer L, Glazer AN (eds) Methods in enzymology, vol 167. Academic, San Diego, chap 14
9. Glazer AN (1988) In: Packer L, Glazer AN (eds) Methods in enzymology, vol 167. Academic, San Diego, chap 32
10. Reuter W, Nickel-Reuter C (1993) J Photochem Photobiol B Biol 18:51-66
11. Bogorad L (1975) Annu Rev Plant Physiol 26:369-401
12. Nomsawai P, Tandeau de Marsac N, Thomas JC, Tanticharoen M, Cheevadhanarak S (1999) Plant Cell Physiol 40:1194-1202
13. Bermejo Roman R, Alvárez-Pez JM, Acién Fernández FG, Molina Grima E (2002) J Biotechnol 93:73-85 (and references contained therein)
14. Sinha RP, Lebert M, Kumar A, Kumar HD, Häder D-P (1995) Biochem Mol Biol Int 37:697-706
15. Glazer AN (1988) In: Packer L, Glazer AN (eds) Methods in enzymology, vol 167. Academic, San Diego, chap 31
16. Cohen-Bazire G, Bryant DA (1982) In: Carr NG, Whitton BA (eds) The biology of cyanobacteria. University of California Press, Berkeley, chap 7
17. Kronick MN (1986) J Immunol Methods 92:1-13
18. Riethman HC, Mawhinney TP, Sherman LA (1988) J Bacteriol 170:2433-2440
19. Fujiwara T (1961) J Biochem 49:361-367
20. Fairchild CD, Jones IK, Glazer AN (1991) J Bacteriol 173:2985-2992
21. Scanlan DJ, Carr NG (1988) In: Packer L, Glazer AN (eds) Methods in enzymology, vol 167. Academic, San Diego, chap 65
22. Lemberg R, Legge JW (1949) Hematin compounds and bile pigments. Interscience, New York
23. Glazer AN (1999) In: Cohen Z (ed) Chemicals from microalgae. Taylor & Francis, Philadelphia, p 263
24. Glazer AN (1994) J Appl Phycol 6:105-112
25. Ho KK, Krogmann DW (1982) In: Carr NG, Whitton BA (eds) The biology of cyanobacteria. University of California Press, Berkeley, chap 8
26. Jeffrey SW, Mantoura RFC, Wright SW (eds) (1997) Phytoplankton pigments in oceanography, Monographs on oceanographic methodology. UNESCO
27. Thornber JP, Markwell JP, Reinman S (1979) Photochem Photobiol 29:1205-1216
28. Rusckowski M, Zilinskas BA (1979) New chlorophyll-protein complexes from the cyanophyte, Nostoc sp. Abstracts of the 7th annual meeting of the American Society of Photobiology, Pacific Grove, CA, p179
29. Carpenter EJ, O'Neil JM, Dawson R, Capone DG, Siddiqui PJ, Roenneberg T, Bergman B (1993) Mar Ecol Prog Ser 95:295-304
30. Nicholls BW (1973) In: Carr NG, Whitton BA (eds) The biology of blue-green algae. Blackwells, Oxford, pp 144-161
31. Holm-Hansen O, Lorenzen CJ, Holmes RW, Strickland JDH (1965) J du Cons Intl Pour l'Expl de la Mer 30:3-15
32. Wright SW, Jeffrey SW, Mantoura RFC, Llewellyn CA, Bjornland T, Repeta D, Welschmeyer N (1991) Mar Ecol Prog Ser 77:183-196
33. Goericke R, Repeta DJ (1993) Mar Ecol Prog Ser 101:307-313
34. Van Heukelem L, Thomas CS (2001) J Chromatogr A 910:31-49
35. Albertsson P (2003) Photosynth Res 76:217-225
36. Svedberg T, Lewis NB (1928) J Am Chem Soc 50:525-536
37. Tiselius A (1930) The moving boundary method of studying the electrophoresis of proteins. Inaugural dissertation, Uppsala University, Uppsala
38. Hjertén S (1958) Arkiv Kemi 13:151-152
39. Kursar TA, Alberte RS (1983) Plant Physiol 72:409-414
40. Alberte RS, Wood AM, Kursar TA, Guillard RRL (1984) Plant Physiol 75:732-739
41. Ong L, Glazer A (1991) J Biol Chem 266:9515-9527
42. Exton RJ, Houghton WM, Esaias W, Hayward LWD (1983) Limnol Oceanogr 28:1225-1231
43. Stewart DE, Farmer FH (1984) Limnol Oceanogr 29:392-397
44. Beer S, Eshel A (1985) Aust J Mar Fresh Res 36:785-792
45. Wyman M (1992) Limnol Oceanogr 37:1300-1306
46. MacColl R, Guard-Friar D (1983) Biochem 22:5568-5572
47. Rhiel E, Kunz J, Wehrmeyer W (1989) Bot Acta 102:46-53
48. Glazer AN, Hixson CS (1977) J Biol Chem 252:32-42
49. Swanson RV, Glazer AN (1990) Anal Biochem 188:295-299
50. Redlinger T, Gantt E (1981) Plant Physiol 68:1375-1379
51. Zolla L, Bianchetti M (2001) J Chromatogr A 912:269-279
52. Zolla L, Bianchetti M, Rinalducci S (2002) Eur J Biochem 269:1534-1542
53. Sun L, Wang S (2003) J Photochem Photobiol B Biol 72:45-53
54. MacColl R, Eisele LE, Menikh A (2003) Biopolymers 72:352-365
55. Viskari PJ, Kinkade CS, Colyer CL (2001) Electrophoresis 22:2327-2335
56. Viskari PJ, Colyer CL (2002) J Chromatogr A 972:269-276
57. Galland-Irmouli AV, Pons L, Luçon M, Villaume C, Mrabet NT, Guéant JL, Fleurence J (2000) J Chromatogr B 739:117-123
58. Pueyo JJ, Gómez-Moreno C (1991) Prep Biochem 21:191-204
59. Jung TM, Dailey MO (1989) J Immunol Methods 121:9-18
60. Campanella L, Crescentini G, Avino P, Angiello L (2000) Ann Chim 90:153-161
61. Viskari PJ, Colyer CL (2003) Anal Biochem 319:263-271
62. Federspiel NA, Scott L (1992) J Bacteriol 174:5994-5998
63. Glauser M, Sidler WA, Graham KW, Bryant DA, Frank G, Wehrli E, Zuber H (1992) FEBS Lett 297:19-23
64. Garnier F, Dubacq JP, Thomas JT (1994) Plant Physiol 106:747-754
65. Rusckowski M, Zilinskas BA (1982) Plant Physiol 70:1055-1059
66. Rümbeli R, Schirmer T, Bode W, Sidler W, Zuber H (1985) J Mol Biol 186:197-200
67. Huang F, Parmryd I, Nilsson F, Persson AL, Pakrasi HB, Andersson B, Norling B (2002) Mol Cell Proteom 1:956-966
68. Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Vamada M (1996) DNA Res 3:109-136
69. Sazuka T, Yamaguchi M, Ohara O (1999) Electrophoresis 20:2160-2171
70. Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, Arellano A, Coleman M, Hauser L, Hess WR, Johnson ZI, Land M, Lindell D, Post AF, Regala W, Shah M, Shaw SL, Steglich C, Sullivan MB, Ting CS, Tolonen A, Webb EA, Zinser ER, Chisholm SW (2003) Nature 424:1042-1047
71. Palenik B, Brahamsha B, Larimer FW, Land M, Hauser L, Chain P, Lamerdin J, Regala W, Allen EE, McCarren J, Paulsen I, Dufresne A, Partensky F, Webb EA, Waterbury J (2003) Nature 424:1037-1042
72. Full genome and identified gene products available at Oak Ridge National Laboratory, Computational Biology, http:// genome.ornl.gov
73. Hunsucker SW, Klage K, Slaughter SM, Potts M, Helm RF (2004) Biochem Biophys Res Commun 317:1121-1127
74. Mankiewicz J, Tarczynska M, Walter Z, Zalewski M (2003) Acta Biol Crac Ser Bot 45:9-20
75. Rao PVL, Gupta N, Bhaskar ASB, Jayaraj R (2002) J Environ Biol 23:215-224
76. Tyagi MB, Thakur JK, Singh DP, Kumar A, Prasuna EG, Kumar A (1999) J Microbiol Biotech 9:9-21
77. Meriluoto J (1997) Anal Chim Acta 352:277-298
78. Pravda M, Kreuzer MP, Guilbault GG (2002) Anal Lett 35:1-15
79. Chrost RJ (1991) In: Chrost RJ (ed) Microbial enzymes in aquatic environments. Springer, Berlin Heidelberg New York, pp 29-59
80. Gonzalez-Gil S, Keafer BA, Jovine RVM, Aguilera A, Lu SH, Anderson DM (1998) Mar Ecol Prog Ser 164:21-35
81. Berges JA, Falkowski PG (1996) J Phycol 32:566-574
82. Martinez J, Azam F (1993) Mar Ecol Prog Ser 92:89-97
83. Ammerman JW, Glover WB (2000) Mar Ecol Prog Ser 201:1-12 (and references contained therein)
84. Arrieta JM, Herndl GJ (2002) Limnol Oceanogr 47:594-599
85. Arrieta JM, Herndl GJ (2001) Appl Environ Microbiol 67:4896-4900
86. Borbely G, Suranyi G (1988) In: Packer L, Glazer AN (eds) Methods in enzymology, vol 167. Academic, San Diego, chap 69
87. Hill DR, Hladun SL, Scherer S, Potts M (1994) J Biol Chem 269:7726-7734
88. National Research Council (1993) Applications of analytical chemistry to oceanic carbon cycle studies. National Academy Press, Washington, DC