메뉴 건너뛰기




Volumn 51, Issue 5, 2002, Pages 729-739

Mapping mutations on phylogenies

Author keywords

Data augmentation; DNA sequence evolution; Markov chain Monte Carlo; Phylogenetics

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; CHROMOSOME MAP; CONFERENCE PAPER; MONTE CARLO METHOD; MUTATION; PHYLOGENY; PROBABILITY; STATISTICAL MODEL;

EID: 0036804625     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150290102393     Document Type: Conference Paper
Times cited : (316)

References (18)
  • 1
    • 0032736987 scopus 로고    scopus 로고
    • Positive selection on the H3 hemagglutinin gene of human influenza virus A
    • Bush, R. M., W. M. Fitch, C. A. Bender, and N. J. Cox. 1999. Positive selection on the H3 hemagglutinin gene of human influenza virus A. Mol. Biol. Evol. 16:1457-1465.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1457-1465
    • Bush, R.M.1    Fitch, W.M.2    Bender, C.A.3    Cox, N.J.4
  • 2
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 3
    • 0030750055 scopus 로고    scopus 로고
    • Long term trends in the evolution of H(3) HA1 human influenza type A
    • Fitch, W. M., R. M. Bush, C. A. Bender, and N. J. Cox. 1997. Long term trends in the evolution of H(3) HA1 human influenza type A. Proc. Natl. Acad. Sci. USA 94:7712-7718.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7712-7718
    • Fitch, W.M.1    Bush, R.M.2    Bender, C.A.3    Cox, N.J.4
  • 4
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W. K. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57:97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 5
    • 0034118829 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of cospeciation
    • Huelsenbeck, J. P., B. Rannala, and B. Larget. 2000. A Bayesian framework for the analysis of cospeciation. Evolution 54:353-364.
    • (2000) Evolution , vol.54 , pp. 353-364
    • Huelsenbeck, J.P.1    Rannala, B.2    Larget, B.3
  • 7
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H. N. Munro, ed.). Academic Press, New York
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of Protein Molecules. Pages 21-123 in Mammalian Protein Metabolism (H. N. Munro, ed.). Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 8
    • 0032976397 scopus 로고    scopus 로고
    • Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget, B., and D. Simon. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16:750-759.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.2
  • 9
    • 0042742904 scopus 로고
    • Posterior predictive p-values
    • Meng, X.-L. 1994. Posterior predictive p-values. Ann. Stat. 22:1142-1160.
    • (1994) Ann. Stat. , vol.22 , pp. 1142-1160
    • Meng, X.-L.1
  • 11
    • 0034804321 scopus 로고    scopus 로고
    • Mutations as missing data: Inferences on the ages and distributions of nonsynonymous and synonymous mutations
    • in press
    • Nielsen, R. 2001. Mutations as missing data: Inferences on the ages and distributions of nonsynonymous and synonymous mutations. Genetics (in press).
    • (2001) Genetics
    • Nielsen, R.1
  • 12
    • 0000439370 scopus 로고
    • Bayesianly justifiable and relevant frequency calculations for the applied statisticians
    • Rubin, D. B. 1984. Bayesianly justifiable and relevant frequency calculations for the applied statisticians. Ann. Stat. 12:1151-1172.
    • (1984) Ann. Stat. , vol.12 , pp. 1151-1172
    • Rubin, D.B.1
  • 13
    • 0004248459 scopus 로고    scopus 로고
    • Sinauer, Sunderland, Massachusetts
    • Swofford, D. L. 2001. PAUP* 4.0b2. Sinauer, Sunderland, Massachusetts.
    • (2001) PAUP* 4.0b2
    • Swofford, D.L.1
  • 14
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of DNA sequences
    • Tavaré, S. 1986. Some probabilistic and statistical problems on the analysis of DNA sequences. Lect. Math. Life. Sci. 17:57-86.
    • (1986) Lect. Math. Life. Sci. , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 15
    • 0029909631 scopus 로고    scopus 로고
    • Contingency tests of neutrality using intra/interspecific gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates
    • Templeton, A. R. 1996. Contingency tests of neutrality using intra/interspecific gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates. Genetics 144:1263-1270.
    • (1996) Genetics , vol.144 , pp. 1263-1270
    • Templeton, A.R.1
  • 16
    • 0034688140 scopus 로고    scopus 로고
    • Rapid evolution of male reproductive genes in the descent of man
    • Wyckoff, G. J., W. Wang, and C. I. Wu. 2000. Rapid evolution of male reproductive genes in the descent of man. Nature 403:304-309.
    • (2000) Nature , vol.403 , pp. 304-309
    • Wyckoff, G.J.1    Wang, W.2    Wu, C.I.3
  • 17
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for variable selection pressure at amino acid sites
    • Yang, Z., R. Nielsen, N. Goldman, and A.-M. K. Pedersen. 2000. Codon-substitution models for variable selection pressure at amino acid sites. Genetics 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.-M.K.4
  • 18
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
    • Yang, Z., and B. Rannala. 1997. Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method. Mol. Biol. Evol. 14:717-724.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 717-724
    • Yang, Z.1    Rannala, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.