Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry

Proteomics

Volumn 5, Issue 2, 2005, Pages 572-584

  Qian, Wei Jun ^a   Jacobs, Jon M ^a   Camp II, David G ^a   Monroe, Matthew E ^a   Moore, Ronald J ^a   Gritsenko, Marina A ^a   Calvano, Steve E ^b   Lowry, Stephen F ^b   Xiao, Wenzhong ^c   Moldawer, Lyle L ^d   Davis, Ronald W ^c   Tompkins, Ronald G ^e   Smith, Richard D ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^b ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^e MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

Comparative analysis; Human plasma; Lipopolysaccharide; Liquid chromatography tandem mass spectrometry

Indexed keywords

APOLIPOPROTEIN A1; BIOLOGICAL MARKER; BLOOD CLOTTING FACTOR; BONE MORPHOGENETIC PROTEIN; C REACTIVE PROTEIN; CERULOPLASMIN; CHOLINESTERASE; COLECALCIFEROL RECEPTOR; COMPLEMENT; COMPLEMENT FACTOR H; CYTOCHROME P450; CYTOKINE; DNA DIRECTED RNA POLYMERASE; FIBRONECTIN; HAPTOGLOBIN; HEMOPEXIN; IMMUNOGLOBULIN; LAMININ; LIPOPOLYSACCHARIDE; LIPOPOLYSACCHARIDE BINDING PROTEIN; MEGALIN; PREALBUMIN; PROTEINASE INHIBITOR; SCATTER FACTOR; SERUM AMYLOID A; TRANSCRIPTION FACTOR; TRANSFERRIN; VITRONECTIN; VON WILLEBRAND FACTOR; ZINC FINGER PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; HUMAN; HUMAN TISSUE; INFLAMMATION; ION EXCHANGE CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; NUCLEOTIDE SEQUENCE; PLASMA; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEOMICS; REPRODUCIBILITY; REVERSED PHASE LIQUID CHROMATOGRAPHY; TANDEM MASS SPECTROMETRY;

BLOOD PROTEINS; CHROMATOGRAPHY, ION EXCHANGE; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, CAPILLARY; HUMANS; LIPOPOLYSACCHARIDES; MASS SPECTROMETRY; PROTEOME; REPRODUCIBILITY OF RESULTS; TIME FACTORS; UP-REGULATION;

EID: 20944449918     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200400942     Document Type: Article

References (48)

1. Anderson, N. L., Anderson, N. G., Mol. Cell. Proteomics 2002, 1, 845-867.
2. McCormack, A. L., Schieltz, D. M., Goode, B., Yang, S. et al., Anal. Chem. 1997, 69, 767-776.
3. Washburn, M. P., Wolters, D., Yates, J. R., Nat. Biotechnol. 2001, 19, 242-247.
4. Han, D. K., Eng, J., Zhou, H., Aebersold, R., Nat. Biotechnol. 2001, 19, 946-951.
5. Shen, Y., Zhao, R., Berger, S. J., Anderson, G. A. et al., Anal. Chem. 2002, 74, 4235-4249.
6. Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., Gygi, S. P., J. Proteome Res. 2003, 2, 43-50.
7. Florens, L., Washburn, M. P., Raine, J. D., Anthony, R. M. et al., Nature 2002, 419, 520-526.
8. Koller, A., Washburn, M. P., Lange, B. M., Andon, N. L. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 11969-11974.
9. Mawuenyega, K. G., Kaji, H., Yamuchi, Y., Shinkawa, T. et al., J. Proteome Res. 2003, 2, 23-35.
10. Kislinger, T., Rahman, K. D. R., Cox, B. et al., Mol. Cell Proteomics 2003, 2, 96-106.
11. Jacobs, J. M., Mottaz, H. M., Yu, L. R., Anderson, D. J. et al., J. Proteome Res. 2004, 3, 68-75.
12. Wu, C. C., MacCoss, M. J., Howell, K. E., Yates, J. R., Nat. Biotechnol. 2003, 21, 532-538.
13. Adkins, J. N., Varnum, S. M., Auberry, K. J., Moore, R. J. et al., Mol. Cell Proteomics 2002, 1, 947-955.
14. Wu, S.-L., Choudhary, G., Ramstrom, M., Bergquist, J., Hancock, W. S., J. Proteome Res. 2003, 2, 383-393.
15. Pieper, R., Gatlin, C. L., Makusky, A. J., Russo, P. S. et al., Proteomics 2003, 3, 1345-1364.
16. Shen, Y., Jacobs, J. M., Camp, D. G., Fang, R. et al., Anal. Chem. 2004, 76, 1134-1144.
17. Van Amersfoort, E. S., Van Berkel, T. J., Kuiper, J., Clin. Microbiol. Rev. 2003, 16, 379-414.
18. Lakhani, S. A., Bogue, C. W., Curr. Opin. Pediatr. 2003, 15, 278-282.
19. Paludan, S. R., J. Leukoc. Biol. 2000, 67, 18-25.
20. Martin, G. S., Mannino, D. M., Eaton, S., Moss, M., N. Engl. J. Med. 2003, 348, 1546-1554.
21. Liotta, L. A., Ferrari, M., Petricoin, E., Nature 2003, 425, 905.
22. Gao, J., Opiteck, G. J., Friedrichs, M. S., Dongre, A. R., Hefta, S. A., J. Proteome Res. 2003, 2, 643-649.
23. Shen, Y., Zhao, R., Belov, M. E., Conrads, T. P. et al., Anal. Chem. 2001, 73, 1766-1775.
24. Eng, J. K., McCormack, A. L., Yates, J. R., J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
25. Petritis, K., Kangas, L. J., Ferguson, P. L., Anderson, G. A. et al., Anal. Chem. 2003, 75, 1039-1048.
26. Anderson, N. L., Polanski, M., Pieper, R., Gatlin, T. et al., Mol. Cell Proteomics 2004, 3, 311-316.
27. Ridker, P. M., Hennekens, C. H., Buring, J. E., Rifai, N., N. Engl. J. Med. 2000, 342, 836-843.
28. Jensenius, M., Ueland, T., Fournier, P. E., Brosstad, F. et al., J. Infect. Dis. 2003, 187, 1332-1336.
29. Okajima, A., Miyazawa, K., Naitoh, Y., Inoue, K., Kitamura, N., Hepatology 1997, 25, 97-102.
30. Ikemoto, M., Tanaka, T., Takai, Y., Murayama, H. et al., Clin. Chem. 2003, 49, 594-600.
31. Ouchi, N., Kihara, S., Arita, Y., Maeda, K. et al., Circulation 1999, 100., 2473-2476.
32. Tsuji, S., Uehori, J., Matsumoto, M., Suzuki, Y. et al., J. Biol. Chem. 2001, 276, 23456-23463.
33. Yao, X., Afonso, C., Fenselau, C., J. Proteome Res. 2003, 2, 147-152.
34. Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. et al., Nat. Biotechnol. 1999, 17, 994-999.
35. Liu, T., Qian, W. J., Strittmatter, E. F., Camp, D. G. et al., Anal. Chem. 2004, 76, 5345-5353.
36. Zhang, H., Li, X.-J., Martin, D. B., Aerbersold, R., Nat. Biotechnol. 2003, 21, 660-665.
37. Pasa-Tolic, L., Harkewicz, R., Anderson, G. A., Tolic, N. et al., J. Am. Soc. Mass Spectrom. 2002, 13, 954-963.
38. Craig, W. Y., Ledue, T. B., Ritchie, R. F., Plasma Proteins: Clinical Utility and Interpretation, Foundation of Blood Research 2001, 107-143.
39. Abbas, A. K., Lichtman, A. H., Pober, J. S., Cellular and Molecular Immunology, W.B. Sanders, Philadelphia, PA 1997, pp. 318-325.
40. Simmons, P., Penny, R., Goller, I., Med. J. Aust. 1969, 2, 494-506.
41. Lum, G., Gambino, S. R., Am. J. Clin. Pathol. 1974, 61, 108-113.
42. Putnam, F. W., Ed., The Plasma Proteins: Structure, Function, and Genetic Control, Academic Press, New York, 1975.
43. Gallay, P., Barras, C., Tobias, P. S., Calandra, T. et al., J. Infect. Dis. 1994, 170, 1319-1322.
44. Nesheim, M., Pittman, D. D., Giles, A. R., Fass, D. N. et al., J. Biol. Chem. 1991, 266, 17815-17820.
45. Tollefsen, D. M., Pestka, C. A., Blood 1985, 66, 769-774.
46. Baxter, R. C., J. Clin. Endocrinol. Metab. 1990, 70, 1347-1353.
47. Petersen, S. V., Valnickova, Z., Enghild, J. J., Biochem. J. 2003, 374, 199-206.
48. Shimomura, T., Kondo, J., Ochiai, M., Naka, D. et al., J. Biol. Chem. 1993, 268, 22927-22932.