메뉴 건너뛰기




Volumn 18, Issue 9, 2002, Pages 411-417

Selective pressures that decrease synonymous mutations in Plasmodium falciparum

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CYTOSINE; GUANINE; MEROZOITE SURFACE PROTEIN 2; PROTOZOAL DNA; PROTOZOAL PROTEIN; PURINE;

EID: 0036746005     PISSN: 14714922     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1471-4922(02)02342-5     Document Type: Review
Times cited : (28)

References (47)
  • 1
    • 0015111534 scopus 로고
    • Dual information in DNA and the evolution of the genetic code
    • Schaap T. Dual information in DNA and the evolution of the genetic code. J. Theor. Biol. 32:1971;293-298.
    • (1971) J. Theor. Biol. , vol.32 , pp. 293-298
    • Schaap, T.1
  • 2
    • 0017368336 scopus 로고
    • Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution
    • Kimura M. Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution. Nature. 267:1977;275-276.
    • (1977) Nature , vol.267 , pp. 275-276
    • Kimura, M.1
  • 4
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstandings about isochores
    • Bernardi G. Misunderstandings about isochores. Gene. 276:2001;3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernardi, G.1
  • 5
    • 0034736520 scopus 로고    scopus 로고
    • Chargaff's legacy
    • Forsdyke D.R., Mortimer J.R. Chargaff's legacy. Gene. 261:2000;127-137.
    • (2000) Gene , vol.261 , pp. 127-137
    • Forsdyke, D.R.1    Mortimer, J.R.2
  • 6
    • 0035927527 scopus 로고    scopus 로고
    • Adaptive value of polymorphism in intracellular self/not-self discrimination
    • Forsdyke D.R. Adaptive value of polymorphism in intracellular self/not-self discrimination. J. Theor. Biol. 210:2001;425-434.
    • (2001) J. Theor. Biol. , vol.210 , pp. 425-434
    • Forsdyke, D.R.1
  • 7
    • 0001474770 scopus 로고    scopus 로고
    • Functional constraint and molecular evolution
    • Nature Publishing Group
    • Forsdyke D.R. Functional constraint and molecular evolution. Encyclopedia of Life Sciences. 7:2001;Nature Publishing Group.
    • (2001) Encyclopedia of Life Sciences , vol.7
    • Forsdyke, D.R.1
  • 9
    • 0032516099 scopus 로고    scopus 로고
    • Malaria's Eve: Evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum
    • Rich S.M., et al. Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum. Proc. Natl. Acad. Sci. U. S. A. 95:1998;4425-4430.
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 4425-4430
    • Rich, S.M.1
  • 10
    • 0031669929 scopus 로고    scopus 로고
    • The recent origin of allelic variation in antigenic determinants of Plasmodium falciparum
    • Rich S.M., Ayala F.J. The recent origin of allelic variation in antigenic determinants of Plasmodium falciparum. Genetics. 150:1998;515-517.
    • (1998) Genetics , vol.150 , pp. 515-517
    • Rich, S.M.1    Ayala, F.J.2
  • 12
    • 0034284669 scopus 로고    scopus 로고
    • The origin of antigenic diversity in Plasmodium falciparum
    • Rich S.M., et al. The origin of antigenic diversity in Plasmodium falciparum. Parasitol. Today. 16:2000;390-396.
    • (2000) Parasitol. Today , vol.16 , pp. 390-396
    • Rich, S.M.1
  • 13
    • 0034691080 scopus 로고    scopus 로고
    • Population structure and recent evolution of Plasmodium falciparum
    • Rich S.M., Ayala F.J. Population structure and recent evolution of Plasmodium falciparum. Proc. Natl. Acad. Sci. U. S. A. 97:2000;6994-7001.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 6994-7001
    • Rich, S.M.1    Ayala, F.J.2
  • 14
    • 0024357399 scopus 로고
    • Malaria and the major histocompatibility complex
    • Arnot D.E. Malaria and the major histocompatibility complex. Parasitol. Today. 5:1989;138-142.
    • (1989) Parasitol. Today , vol.5 , pp. 138-142
    • Arnot, D.E.1
  • 15
    • 0026272085 scopus 로고
    • Possible mechanisms for the maintenance of polymorphisms in Plasmodium populations
    • Arnot D.E. Possible mechanisms for the maintenance of polymorphisms in Plasmodium populations. Acta Leiden. 60:1991;29-35.
    • (1991) Acta Leiden. , vol.60 , pp. 29-35
    • Arnot, D.E.1
  • 17
    • 0032990017 scopus 로고    scopus 로고
    • Circumsporozoite polymorphisms, silent mutations and the evolution of Plasmodium falciparum
    • Saul A. Circumsporozoite polymorphisms, silent mutations and the evolution of Plasmodium falciparum. Parasitol. Today. 15:1999;38-39.
    • (1999) Parasitol. Today , vol.15 , pp. 38-39
    • Saul, A.1
  • 18
    • 0031669928 scopus 로고    scopus 로고
    • Ancient polymorphism and the hypothesis of a recent bottleneck in the malaria parasite Plasmodium falciparum
    • Hughes A.L., Verra F. Ancient polymorphism and the hypothesis of a recent bottleneck in the malaria parasite Plasmodium falciparum. Genetics. 150:1998;511-513.
    • (1998) Genetics , vol.150 , pp. 511-513
    • Hughes, A.L.1    Verra, F.2
  • 19
    • 0035823291 scopus 로고    scopus 로고
    • Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum
    • Hughes A.L., Verra F. Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum. Proc. R. Soc. Lond. B Biol. Sci. 268:2001;1855-1860.
    • (2001) Proc. R. Soc. Lond. B Biol. Sci. , vol.268 , pp. 1855-1860
    • Hughes, A.L.1    Verra, F.2
  • 20
    • 0036698225 scopus 로고    scopus 로고
    • Extensive polymorphism and ancient origin of the human malaria parasite
    • Hughes A.L., Verra F. Extensive polymorphism and ancient origin of the human malaria parasite. Trends Parasitol. 18:2002;348-355.
    • (2002) Trends Parasitol. , vol.18 , pp. 348-355
    • Hughes, A.L.1    Verra, F.2
  • 21
    • 0035919665 scopus 로고    scopus 로고
    • Recent origin of Plasmodium falciparum from a single progenitor
    • Volkman S.K., et al. Recent origin of Plasmodium falciparum from a single progenitor. Science. 293:2001;482-484.
    • (2001) Science , vol.293 , pp. 482-484
    • Volkman, S.K.1
  • 22
    • 0036606707 scopus 로고    scopus 로고
    • The paradoxical population genetics of Plasmodium falciparum
    • Hartl D.L., et al. The paradoxical population genetics of Plasmodium falciparum. Trends Parasitol. 18:2002;266-273.
    • (2002) Trends Parasitol. , vol.18 , pp. 266-273
    • Hartl, D.L.1
  • 23
    • 79958819106 scopus 로고
    • Workings of the genetic code
    • Grantham R. Workings of the genetic code. Trends Biochem. Sci. 5:1980;327-331.
    • (1980) Trends Biochem. Sci. , vol.5 , pp. 327-331
    • Grantham, R.1
  • 24
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • Bernardi G., Bernardi G. Compositional constraints and genome evolution. J. Mol. Evol. 24:1986;1-11.
    • (1986) J. Mol. Evol. , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 25
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino acid usage and GC composition within and across genomes
    • research0016.1-0016.8
    • Knight, R.D. et al. (2001) A simple model based on mutation and selection explains trends in codon and amino acid usage and GC composition within and across genomes. Genome Biol. 2, research0016.1-0016.8
    • (2001) Genome Biol. , vol.2
    • Knight, R.D.1
  • 26
    • 0034006790 scopus 로고    scopus 로고
    • Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine
    • Lao P.J., Forsdyke D.R. Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine. Genome Res. 10:2000;228-236.
    • (2000) Genome Res. , vol.10 , pp. 228-236
    • Lao, P.J.1    Forsdyke, D.R.2
  • 27
    • 0035925033 scopus 로고    scopus 로고
    • Double-stranded RNA as a not-self alarm signal
    • Cristillo A.D., et al. Double-stranded RNA as a not-self alarm signal. J. Theor. Biol. 208:2001;475-491.
    • (2001) J. Theor. Biol. , vol.208 , pp. 475-491
    • Cristillo, A.D.1
  • 28
    • 0032555046 scopus 로고    scopus 로고
    • An alternative way of thinking about stem-loops in DNA
    • Forsdyke D.R. An alternative way of thinking about stem-loops in DNA. J. Theor. Biol. 192:1998;489-504.
    • (1998) J. Theor. Biol. , vol.192 , pp. 489-504
    • Forsdyke, D.R.1
  • 29
    • 73049156042 scopus 로고
    • Compositional correlation between deoxyribonucleic acid and protein
    • Sueoka N. Compositional correlation between deoxyribonucleic acid and protein. Cold Spring Harbor Symp. Quant. Biol. 26:1961;35-43.
    • (1961) Cold Spring Harbor Symp. Quant. Biol. , vol.26 , pp. 35-43
    • Sueoka, N.1
  • 30
    • 0023274170 scopus 로고
    • The rate of synonymous substitution in eubacterial genes is inversely related to codon usage bias
    • Sharp P.M., Li W-H. The rate of synonymous substitution in eubacterial genes is inversely related to codon usage bias. Mol. Biol. Evol. 4:1987;222-230.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 222-230
    • Sharp, P.M.1    Li, W.-H.2
  • 31
    • 0033630767 scopus 로고    scopus 로고
    • A global complexity measure for biological sequences. AT-rich and GC-rich genomes encode less complex proteins
    • Wan H., Wootton J.C. A global complexity measure for biological sequences. AT-rich and GC-rich genomes encode less complex proteins. Comput. Chem. 24:2000;71-94.
    • (2000) Comput. Chem. , vol.24 , pp. 71-94
    • Wan, H.1    Wootton, J.C.2
  • 32
    • 0035104190 scopus 로고    scopus 로고
    • Low-complexity regions in Plasmodium falciparum proteins
    • Pizzi E., Frontali C. Low-complexity regions in Plasmodium falciparum proteins. Genome Res. 11:2001;218-229.
    • (2001) Genome Res. , vol.11 , pp. 218-229
    • Pizzi, E.1    Frontali, C.2
  • 33
    • 0033533934 scopus 로고    scopus 로고
    • Two levels of information in DNA
    • Forsdyke D.R. Two levels of information in DNA. J. Theor. Biol. 201:1999;47-61.
    • (1999) J. Theor. Biol. , vol.201 , pp. 47-61
    • Forsdyke, D.R.1
  • 34
    • 0029619270 scopus 로고
    • Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection
    • Forsdyke D.R. Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection. J. Mol. Evol. 41:1995;1022-1037.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1022-1037
    • Forsdyke, D.R.1
  • 35
    • 12744257602 scopus 로고    scopus 로고
    • Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum
    • Gardner M.J., et al. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Science. 282:1998;1126-1132.
    • (1998) Science , vol.282 , pp. 1126-1132
    • Gardner, M.J.1
  • 36
    • 0033527048 scopus 로고    scopus 로고
    • The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum
    • Bowman S., et al. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. Nature. 400:1999;532-538.
    • (1999) Nature , vol.400 , pp. 532-538
    • Bowman, S.1
  • 37
    • 0013997435 scopus 로고
    • Pyrimidine clusters in the transcribing strands of DNA and their possible role in the initiation of RNA synthesis
    • Szybalski W., et al. Pyrimidine clusters in the transcribing strands of DNA and their possible role in the initiation of RNA synthesis. Cold Spring Harbor Symp. Quant. Biol. 31:1966;123-127.
    • (1966) Cold Spring Harbor Symp. Quant. Biol. , vol.31 , pp. 123-127
    • Szybalski, W.1
  • 39
    • 0015861447 scopus 로고
    • Secondary structure and coding potential of the coat protein gene of bacteriophage MS2
    • Ball L.A. Secondary structure and coding potential of the coat protein gene of bacteriophage MS2. Nat. New Biol. 242:1973;44-45.
    • (1973) Nat. New Biol. , vol.242 , pp. 44-45
    • Ball, L.A.1
  • 40
    • 0028979822 scopus 로고
    • A stem-loop 'kissing' model for the initiation of recombination and the origin of introns
    • Forsdyke D.R. A stem-loop 'kissing' model for the initiation of recombination and the origin of introns. Mol. Biol. Evol. 12:1995a;949-958.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 949-958
    • Forsdyke, D.R.1
  • 41
    • 0028818801 scopus 로고
    • Conservation of stem-loop potential in introns of snake venom phospholipase A2 genes
    • Forsdyke D.R. Conservation of stem-loop potential in introns of snake venom phospholipase A2 genes. Mol. Biol. Evol. 12:1995b;1157-1165.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1157-1165
    • Forsdyke, D.R.1
  • 42
    • 0033119454 scopus 로고    scopus 로고
    • MRNAs have greater negative folding free energies than shuffled or codon-choice randomized sequences
    • Seffens W., Digby D. mRNAs have greater negative folding free energies than shuffled or codon-choice randomized sequences. Nucleic Acids Res. 27:1999;1578-1584.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1578-1584
    • Seffens, W.1    Digby, D.2
  • 43
    • 0035972861 scopus 로고    scopus 로고
    • Introns resolve the conflict between base order-dependent stem-loop potential and the encoding of RNA or protein: Further evidence from overlapping genes
    • Barrette I.P., et al. Introns resolve the conflict between base order-dependent stem-loop potential and the encoding of RNA or protein: further evidence from overlapping genes. Gene. 270:2001;181-189.
    • (2001) Gene , vol.270 , pp. 181-189
    • Barrette, I.P.1
  • 44
    • 0030030417 scopus 로고    scopus 로고
    • Stem-loop potential in MHC genes: A new way of evaluating positive Darwinian selection
    • Forsdyke D.R. Stem-loop potential in MHC genes: a new way of evaluating positive Darwinian selection. Immunogenetics. 43:1996;182-189.
    • (1996) Immunogenetics , vol.43 , pp. 182-189
    • Forsdyke, D.R.1
  • 45
    • 0021759169 scopus 로고
    • Doublet frequencies in evolutionarily distinct groups
    • Nussinov R. Doublet frequencies in evolutionarily distinct groups. Nucleic Acids Res. 12:1984;1749-1763.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 1749-1763
    • Nussinov, R.1
  • 46
    • 0019308408 scopus 로고
    • The influence of codon context on genetic code translation
    • Bossi L., Roth J.R. The influence of codon context on genetic code translation. Nature. 286:1980;123-127.
    • (1980) Nature , vol.286 , pp. 123-127
    • Bossi, L.1    Roth, J.R.2
  • 47
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi G. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. J. Mol. Evol. 136:1994;927-935.
    • (1994) J. Mol. Evol. , vol.136 , pp. 927-935
    • Akashi, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.