메뉴 건너뛰기




Volumn 289, Issue 4, 1999, Pages 785-797

Specificity from the synapsis of DNA elements by the SfiI endonuclease

Author keywords

DNA synapsis; DNA protein interaction; Oligonucleotide; Recognition sequence; Restriction modification

Indexed keywords

DNA; DOUBLE STRANDED DNA; ENDONUCLEASE; MAGNESIUM ION; RESTRICTION ENDONUCLEASE;

EID: 0032983155     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2822     Document Type: Article
Times cited : (50)

References (46)
  • 1
    • 0032489041 scopus 로고    scopus 로고
    • Polymerases and the replisome: Machines within machines
    • Baker T. A., Bell S. P. Polymerases and the replisome: machines within machines. Cell. 92:1998;295-305.
    • (1998) Cell , vol.92 , pp. 295-305
    • Baker, T.A.1    Bell, S.P.2
  • 2
    • 0033597347 scopus 로고    scopus 로고
    • DNA cleavage by the Eco RV restriction endonuclease: Roles of divalent metal ions in specificity and catalysis
    • Baldwin G. S., Sessions R. B., Erskine S. G., Halford S. E. DNA cleavage by the Eco RV restriction endonuclease: roles of divalent metal ions in specificity and catalysis. J. Mol. Biol. 288:1999;87-104.
    • (1999) J. Mol. Biol. , vol.288 , pp. 87-104
    • Baldwin, G.S.1    Sessions, R.B.2    Erskine, S.G.3    Halford, S.E.4
  • 3
    • 0027163769 scopus 로고
    • Formation of a cleavasome: Enhancer DNA stabilizes an active conformation of Nae I dimer
    • Baxter B. K., Topal M. D. Formation of a cleavasome: enhancer DNA stabilizes an active conformation of Nae I dimer. Biochemistry. 32:1993;8291-8298.
    • (1993) Biochemistry , vol.32 , pp. 8291-8298
    • Baxter, B.K.1    Topal, M.D.2
  • 4
    • 0023947427 scopus 로고
    • Selection of DNA binding sites by regulatory proteins
    • Berg O. G., von Hippel P. H. Selection of DNA binding sites by regulatory proteins. Trends Biochem. Sci. 13:1988;207-211.
    • (1988) Trends Biochem. Sci. , vol.13 , pp. 207-211
    • Berg, O.G.1    Von Hippel, P.H.2
  • 6
    • 0033040499 scopus 로고    scopus 로고
    • DNA restriction dependent on two recognition sites: Activities of the Sfi I restriction-modification system inEscherichia coli
    • Bilcock D. T., Halford S. E. DNA restriction dependent on two recognition sites: activities of the Sfi I restriction-modification system inEscherichia coli. Mol. Microbiol. 31:1999;1243-1254.
    • (1999) Mol. Microbiol. , vol.31 , pp. 1243-1254
    • Bilcock, D.T.1    Halford, S.E.2
  • 8
    • 0030199188 scopus 로고    scopus 로고
    • DNA transposition - jumping gene machine, some assembly required
    • Chaconas G., Lavoie B. D., Watson M. A. DNA transposition - jumping gene machine, some assembly required. Curr. Biol. 6:1996;817-820.
    • (1996) Curr. Biol. , vol.6 , pp. 817-820
    • Chaconas, G.1    Lavoie, B.D.2    Watson, M.A.3
  • 9
    • 0025148348 scopus 로고
    • Nucleoprotein structures initiating DNA replication, transcription and site-specific recombination
    • Echols H. Nucleoprotein structures initiating DNA replication, transcription and site-specific recombination. J. Biol. Chem. 265:1990;14697-14700.
    • (1990) J. Biol. Chem. , vol.265 , pp. 14697-14700
    • Echols, H.1
  • 10
    • 0032488670 scopus 로고    scopus 로고
    • Reactions of the Eco RV restriction endonuclease with fluorescent oligodeoxynucleotides: Identical equilibrium constants for binding to specific and non specific DNA
    • Erskine S. G., Halford S. E. Reactions of the Eco RV restriction endonuclease with fluorescent oligodeoxynucleotides: identical equilibrium constants for binding to specific and non specific DNA. J. Mol. Biol. 275:1998;759-772.
    • (1998) J. Mol. Biol. , vol.275 , pp. 759-772
    • Erskine, S.G.1    Halford, S.E.2
  • 11
    • 0030985132 scopus 로고    scopus 로고
    • Rapid reaction analysis of plasmid DNA cleavage by the Eco RV restriction endonuclease
    • Erskine S. G., Baldwin G. S., Halford S. E. Rapid reaction analysis of plasmid DNA cleavage by the Eco RV restriction endonuclease. Biochemistry. 36:1997;7567-7576.
    • (1997) Biochemistry , vol.36 , pp. 7567-7576
    • Erskine, S.G.1    Baldwin, G.S.2    Halford, S.E.3
  • 12
    • 0026705040 scopus 로고
    • Interaction of Eco RII endonuclease with DNA substrates containing single recognition sites
    • Gabbara S., Bhagwat A. S. Interaction of Eco RII endonuclease with DNA substrates containing single recognition sites. J. Biol. Chem. 267:1992;18623-18630.
    • (1992) J. Biol. Chem. , vol.267 , pp. 18623-18630
    • Gabbara, S.1    Bhagwat, A.S.2
  • 13
    • 0010697814 scopus 로고
    • Repair of the Escherichia coli chromosome after in vivo scission by the Eco RI endonuclease
    • Heitman J., Zinder N. D., Model P. Repair of the Escherichia coli chromosome after in vivo scission by the Eco RI endonuclease. Proc. Natl Acad. Sci. USA. 86:1989;2281-2285.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 2281-2285
    • Heitman, J.1    Zinder, N.D.2    Model, P.3
  • 14
    • 0031959011 scopus 로고    scopus 로고
    • Does Bcg I, a unique restriction endonuclease, require two recognition sites for cleavage?
    • Kong H., Smith C. L. Does Bcg I, a unique restriction endonuclease, require two recognition sites for cleavage? Biol. Chem. 379:1998;605-609.
    • (1998) Biol. Chem. , vol.379 , pp. 605-609
    • Kong, H.1    Smith, C.L.2
  • 15
    • 0024284313 scopus 로고
    • Eco RII can be activated to cleave refractory DNA recognition sites
    • Krüger D. H., Barcak G. J., Reuter M., Smith H. O. Eco RII can be activated to cleave refractory DNA recognition sites. Nucl. Acids Res. 16:1988;3997-4008.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 3997-4008
    • Krüger, D.H.1    Barcak, G.J.2    Reuter, M.3    Smith, H.O.4
  • 16
    • 0025203657 scopus 로고
    • The energetic basis of specificity in the Eco RI endonuclease-DNA interaction
    • Lesser D. A., Kurpiewski M. R., Jen-Jacobson L. The energetic basis of specificity in the Eco RI endonuclease-DNA interaction. Science. 250:1990;776-786.
    • (1990) Science , vol.250 , pp. 776-786
    • Lesser, D.A.1    Kurpiewski, M.R.2    Jen-Jacobson, L.3
  • 17
    • 0026584744 scopus 로고
    • Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage
    • Meisel A., Bickle T. A., Krüger D. H., Schroeder C. Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage. Nature. 355:1992;467-469.
    • (1992) Nature , vol.355 , pp. 467-469
    • Meisel, A.1    Bickle, T.A.2    Krüger, D.H.3    Schroeder, C.4
  • 18
    • 0029045067 scopus 로고
    • Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
    • Meisel A., Mackeldanz P., Bickle T. A., Krüger D. H., Schroeder C. Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. EMBO J. 14:1995;2958-2966.
    • (1995) EMBO J. , vol.14 , pp. 2958-2966
    • Meisel, A.1    Mackeldanz, P.2    Bickle, T.A.3    Krüger, D.H.4    Schroeder, C.5
  • 19
    • 0030628279 scopus 로고    scopus 로고
    • Polynucleotidyl transfer reactions in site-specific DNA recombination
    • Mizuuchi K. Polynucleotidyl transfer reactions in site-specific DNA recombination. Genes Cells. 2:1997;1-12.
    • (1997) Genes Cells , vol.2 , pp. 1-12
    • Mizuuchi, K.1
  • 20
    • 0033528762 scopus 로고    scopus 로고
    • A new method for determining the stereochemistry of DNA cleavage reactions: Applications to the Sfi I andHpa II restriction endonucleases and to the MuA transposase
    • Mizuuchi K., Nobbs T. J., Halford S. E., Adzuma K., Qin J. A new method for determining the stereochemistry of DNA cleavage reactions: applications to the Sfi I andHpa II restriction endonucleases and to the MuA transposase. Biochemistry. 38:1999;4640-4648.
    • (1999) Biochemistry , vol.38 , pp. 4640-4648
    • Mizuuchi, K.1    Nobbs, T.J.2    Halford, S.E.3    Adzuma, K.4    Qin, J.5
  • 21
    • 0030867835 scopus 로고    scopus 로고
    • Catalytic and DNA binding properties of Pvu II restriction endonuclease mutants
    • Nastri H. G., Evans P. D., Walker I. H., Riggs P. D. Catalytic and DNA binding properties of Pvu II restriction endonuclease mutants. J. Biol. Chem. 272:1997;25761-25767.
    • (1997) J. Biol. Chem. , vol.272 , pp. 25761-25767
    • Nastri, H.G.1    Evans, P.D.2    Walker, I.H.3    Riggs, P.D.4
  • 22
    • 0029091376 scopus 로고
    • DNA cleavage at two recognition sites by the Sfi I restriction endonuclease: Salt dependence of cis and trans interactions between distant DNA sites
    • Nobbs T. J., Halford S. E. DNA cleavage at two recognition sites by the Sfi I restriction endonuclease: salt dependence of cis and trans interactions between distant DNA sites. J. Mol. Biol. 252:1995;399-411.
    • (1995) J. Mol. Biol. , vol.252 , pp. 399-411
    • Nobbs, T.J.1    Halford, S.E.2
  • 24
    • 0031959950 scopus 로고    scopus 로고
    • Phosphorothioate substrates for the Sfi I restriction endonuclease
    • Nobbs T. J., Williams S. A., Connolly B. A., Halford S. E. Phosphorothioate substrates for the Sfi I restriction endonuclease. Biol. Chem. 379:1998b;599-604.
    • (1998) Biol. Chem. , vol.379 , pp. 599-604
    • Nobbs, T.J.1    Williams, S.A.2    Connolly, B.A.3    Halford, S.E.4
  • 25
    • 0029382152 scopus 로고
    • Pieces of the site-specific recombination puzzle
    • Oram M., Szczelkun M. D., Halford S. E. Pieces of the site-specific recombination puzzle. Curr. Biol. 5:1995;1106-1109.
    • (1995) Curr. Biol. , vol.5 , pp. 1106-1109
    • Oram, M.1    Szczelkun, M.D.2    Halford, S.E.3
  • 26
    • 0021760476 scopus 로고
    • A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fibriatus
    • Qiang B.-Q., Schildkraut I. A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fibriatus. Nucl. Acids Res. 12:1984;4507-4516.
    • (1984) Nucl. Acids Res. , vol.12 , pp. 4507-4516
    • Qiang, B.-Q.1    Schildkraut, I.2
  • 27
    • 0032478624 scopus 로고    scopus 로고
    • Cooperative binding properties of restriction endonuclease Eco RII with DNA recognition sites
    • Reuter M., Kupper D., Meisel A., Schroeder C., Krüger D. H. Cooperative binding properties of restriction endonuclease Eco RII with DNA recognition sites. J. Biol. Chem. 273:1998;8294-8300.
    • (1998) J. Biol. Chem. , vol.273 , pp. 8294-8300
    • Reuter, M.1    Kupper, D.2    Meisel, A.3    Schroeder, C.4    Krüger, D.H.5
  • 28
    • 0028801067 scopus 로고
    • Action at a distance: DNA-looping and initiation of transcription
    • Rippe K., von Hippel P. H., Langowski J. Action at a distance: DNA-looping and initiation of transcription. Trends Biochem. Sci. 20:1995;500-506.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 500-506
    • Rippe, K.1    Von Hippel, P.H.2    Langowski, J.3
  • 29
    • 0002598414 scopus 로고
    • Type II restriction endonucleases
    • S. M. Linn, R. S. Lloyd, & R. J. Roberts. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Roberts R. J., Halford S. E. Type II restriction endonucleases. Linn S. M., Lloyd R. S., Roberts R. J. Nucleases. 1993;45-88 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
    • (1993) Nucleases , pp. 45-88
    • Roberts, R.J.1    Halford, S.E.2
  • 30
    • 0032946488 scopus 로고    scopus 로고
    • REBASE - restriction enzymes and methylases
    • Roberts R. J., Macelis D. REBASE - restriction enzymes and methylases. Nucl. Acids Res. 26:1999;312-313.
    • (1999) Nucl. Acids Res. , vol.26 , pp. 312-313
    • Roberts, R.J.1    Macelis, D.2
  • 32
    • 0031981857 scopus 로고    scopus 로고
    • Dependence of McrBC cleavage on distance between recognition elements
    • Stewart F. J., Raleigh E. A. Dependence of McrBC cleavage on distance between recognition elements. Biol. Chem. 379:1998;611-616.
    • (1998) Biol. Chem. , vol.379 , pp. 611-616
    • Stewart, F.J.1    Raleigh, E.A.2
  • 33
    • 0029978713 scopus 로고    scopus 로고
    • Recombination by resolvase to analyse DNA communications by the Sfi I restriction endonuclease
    • Szczelkun M. D., Halford S. E. Recombination by resolvase to analyse DNA communications by the Sfi I restriction endonuclease. EMBO J. 15:1996;1460-1469.
    • (1996) EMBO J. , vol.15 , pp. 1460-1469
    • Szczelkun, M.D.1    Halford, S.E.2
  • 34
    • 0029910629 scopus 로고    scopus 로고
    • Repercussions of DNA tracking by the type IC restriction endonuclease Eco R124I on linear, circular and catenated substrates
    • Szczelkun M. D., Dillingham M. S., Janscak P., Firman K., Halford S. E. Repercussions of DNA tracking by the type IC restriction endonuclease Eco R124I on linear, circular and catenated substrates. EMBO J. 15:1996;6335-6347.
    • (1996) EMBO J. , vol.15 , pp. 6335-6347
    • Szczelkun, M.D.1    Dillingham, M.S.2    Janscak, P.3    Firman, K.4    Halford, S.E.5
  • 35
    • 0024322164 scopus 로고
    • Discrimination between DNA sequences by the Eco RV restriction endonuclease
    • Taylor J. D., Halford S. E. Discrimination between DNA sequences by the Eco RV restriction endonuclease. Biochemistry. 28:1989;6198-6207.
    • (1989) Biochemistry , vol.28 , pp. 6198-6207
    • Taylor, J.D.1    Halford, S.E.2
  • 36
    • 0025609630 scopus 로고
    • Fidelity of DNA recognition by the Eco RV restriction-modification system in vivo
    • Taylor J. D., Goodall A. J., Vermote C. L., Halford S. E. Fidelity of DNA recognition by the Eco RV restriction-modification system in vivo. Biochemistry. 29:1990;10727-10733.
    • (1990) Biochemistry , vol.29 , pp. 10727-10733
    • Taylor, J.D.1    Goodall, A.J.2    Vermote, C.L.3    Halford, S.E.4
  • 37
    • 0025889005 scopus 로고
    • Eco RV restriction endonuclease binds all DNA sequences with equal affinity
    • Taylor J. D., Badcoe I. G., Clarke A. R., Halford S. E. Eco RV restriction endonuclease binds all DNA sequences with equal affinity. Biochemistry. 30:1991;8743-8753.
    • (1991) Biochemistry , vol.30 , pp. 8743-8753
    • Taylor, J.D.1    Badcoe, I.G.2    Clarke, A.R.3    Halford, S.E.4
  • 38
    • 0023528415 scopus 로고
    • Mechanism of specific site location and DNA cleavage by Eco RI endonuclease
    • Terry B. J., Jack W. E., Modrich P. Mechanism of specific site location and DNA cleavage by Eco RI endonuclease. Gene Amplif. Anal. 5:1987;103-118.
    • (1987) Gene Amplif. Anal. , vol.5 , pp. 103-118
    • Terry, B.J.1    Jack, W.E.2    Modrich, P.3
  • 40
    • 0028938496 scopus 로고
    • Divalent metal ions at the active sites of the Eco RV and Eco RI restriction endonucleases
    • Vipond I. B., Baldwin G. S., Halford S. E. Divalent metal ions at the active sites of the Eco RV and Eco RI restriction endonucleases. Biochemistry. 34:1995;697-704.
    • (1995) Biochemistry , vol.34 , pp. 697-704
    • Vipond, I.B.1    Baldwin, G.S.2    Halford, S.E.3
  • 43
    • 0026627728 scopus 로고
    • Continuous spectrophotometric assay for endonucleases using synthetic oligodeoxynucleotides and based on the hyperchromic effect
    • Waters T. R., Connolly B. A. Continuous spectrophotometric assay for endonucleases using synthetic oligodeoxynucleotides and based on the hyperchromic effect. Anal. Biochem. 204:1992;204-209.
    • (1992) Anal. Biochem. , vol.204 , pp. 204-209
    • Waters, T.R.1    Connolly, B.A.2
  • 44
    • 0032555293 scopus 로고    scopus 로고
    • DNA looping by the Sfi I restriction endonuclease
    • Wentzell L. M., Halford S. E. DNA looping by the Sfi I restriction endonuclease. J. Mol. Biol. 281:1998;433-444.
    • (1998) J. Mol. Biol. , vol.281 , pp. 433-444
    • Wentzell, L.M.1    Halford, S.E.2
  • 45
    • 0028988946 scopus 로고
    • The Sfi I restriction endonuclease makes a 4-strand DNA break at two copies of its recognition sequence
    • Wentzell L. M., Nobbs T. J., Halford S. E. The Sfi I restriction endonuclease makes a 4-strand DNA break at two copies of its recognition sequence. J. Mol. Biol. 248:1995;581-595.
    • (1995) J. Mol. Biol. , vol.248 , pp. 581-595
    • Wentzell, L.M.1    Nobbs, T.J.2    Halford, S.E.3
  • 46
    • 0026792902 scopus 로고
    • Nonidentical DNA-binding sites of endonuclease Nae I recognize different families of sequences flanking the recognition site
    • Yang C. C., Topal M. D. Nonidentical DNA-binding sites of endonuclease Nae I recognize different families of sequences flanking the recognition site. Biochemistry. 31:1992;9657-9664.
    • (1992) Biochemistry , vol.31 , pp. 9657-9664
    • Yang, C.C.1    Topal, M.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.