Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos)

Journal of General Virology

Volumn 86, Issue 6, 2005, Pages 1597-1607

  Jonassen, Christine Monceyron ^a   Kofstad, Tone ^a   Larsen, Inger Lise ^a   Løvland, Atle ^a   Handeland, Kjell ^a   Follestad, Arne ^b   Lillehaug, Atle ^a  

^a NORWEGIAN VETERINARY INSTITUTE   (Norway)

^b NORWEGIAN INSTITUTE FOR NATURE RESEARCH   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOCAPSID PROTEIN; RNA POLYMERASE;

3' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ANAS PLATYRHYNCHOS; ANIMAL DISEASE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ANSER ANSER; ARTICLE; BIRD; BODY WEIGHT DISORDER; CLOACA; COLUMBIA LIVIA; CONTROLLED STUDY; CORONAVIRUS; DOWNSTREAM PROCESSING; FEMALE; GENETIC CONSERVATION; GOOSE; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PIGEON; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA STRUCTURE; SAMPLING; SARS CORONAVIRUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; VIRUS CLASSIFICATION; VIRUS IDENTIFICATION; VIRUS INFECTION;

3' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; BIRD DISEASES; CLOACA; COLUMBIDAE; CORONAVIRUS; CORONAVIRUS INFECTIONS; DUCKS; GEESE; MOLECULAR SEQUENCE DATA; NORWAY; NUCLEOCAPSID; NUCLEOCAPSID PROTEINS; PHYLOGENY; RNA REPLICASE; RNA, VIRAL; SEQUENCE ALIGNMENT; WEIGHT LOSS;

ANAS PLATYRHYNCHOS; ANIMALIA; ANSER ANSER; ANSER SP.; AVES; COLUMBA; COLUMBIA LIVIA; CORONAVIRUS; PLATYRHYNCHOS; SARS CORONAVIRUS;

EID: 20044393041     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80927-0     Document Type: Article

References (50)

1. Adams, N. R. & Hofstad, M. S. (1971). isolation of transmissible enteritis agent of turkeys in avian embryos. Avian Dis 15, 426-433.
2. Albassam, M. A., Winterfield, R. W. & Thacker, H. L. (1986). Comparison of the nephropathogenicity of four strains of infectious bronchitis virus. Avian Dis 30, 468-476.
3. Barr, D. A., Reece, R. L., O'Rourke, D., Button, C. & Faragher, J. T. (1988). Isolation of infectious bronchitis virus from a flock of racing pigeons. Aust Vet J 65, 228.
4. Bell, D., Roberton, S. & Hunter, P. R. (2004). Animal origins of SARS coronavirus: possible links with the international trade in small carnivores. Philos Trans R Soc Lond B Biol Sci 359, 1107-1114.
5. Breslin, J. J., Smith, L. G., Fuller, F. J. & Guy, J. S. (1999). Sequence analysis of the turkey coronavirus nucleocapsid protein gene and 3′ untranslated region identifies the virus as a close relative of infectious bronchitis virus. Virus Res 65, 187-193.
6. Cavanagh, D., Mawditt, K., Sharma, M., Drury, S. E., Ainsworth, H. L., Britton, P. & Gough, R. E. (2001). Detection of a coronavirus from turkey poults in Europe genetically related to infectious bronchitis virus of chicken. Avian Pathol 30, 355-368.
7. Cavanagh, D., Mawditt, K., Welchman, D. B., Britton, P. & Gough, R. E. (2002). Coronaviruses from pheasants (Phasianus colchicus) are genetically closely related to coronaviruses of domestic fowl (infectious bronchitis virus) and turkeys. Avian Pathol 31, 81-93.
8. Chen, H., Wurm, T., Britton, P., Brooks, G. & Hiscox, J. A. (2002). Interaction of the coronavirus nucleoprotein with nucleolar antigens and the host cell. J Virol 76, 5233-5250.
9. Dalton, K., Casais, R., Shaw, K., Stirrups, K., Evans, S., Britton, P., Brown, T. D. & Cavanagh, D. (2001). cis-acting sequences required for coronavirus infectious bronchitis virus defective-RNA replication and packaging. J Virol 75, 125-133.
10. Drosten, C., Gunther, S., Praiser, W. & 23 other authors (2003). Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med 348, 1967-1976.
11. Enjuanes, L., Brian, D., Cavanagh, D. & 9 other authors (2000). Coronaviridae. In Virus Taxonomy. Classification and Nomenclature of Viruses. Edited by M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carsten, M. K. Estes, S. M. Lemon, D. J. McGeoch, J. Maniloff, M. A. Mayo, C. R. Pringle & R. B. Wickner. San Diego: Academic Press.
12. Fischer, F., Peng, D., Hingley, S. T., Weiss, S. R. & Masters, P. S. (1997). The internal open reading frame within the nucleocapsid gene of mouse hepatitis virus encodes a structural protein that is not essential for viral replication. J Virol 71, 996-1003.
13. Goebel, S. J., Taylor, J. & Masters, P. S. (2004). The 3′ cis-acting genomic replication element of the severe acute respiratory syndrome coronavirus can function in the murine coronavirus genome. J Virol 78, 7846-7851.
14. Gonzalez, J. M., Gomez-Puertas, P., Cavanagh, D., Gorbalenya, A. E. & Enjuanes, L. (2003). A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Arch Virol 148, 2207-2235.
15. Gough, R. E., Cox, W. J., Winkler, C. E., Sharp, M. W. & Spackman, D. (1996). Isolation and identification of infectious bronchitis virus from pheasants. Vet Rec 138, 208-209.
16. Guan, Y., Zheng, B. J., He, Y. Q. & 15 other authors (2003). Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 302, 276-278.
17. Hartmann, E., Rapoport, T. A. & Lodish, H. F. (1989). Predicting the orientation of eukaryotic membrane-spanning proteins. Proc Natl Acad Sci U S A 86, 5786-5790.
18. Herrewegh, A. A., Vennema, H., Horzinek, M. C., Rottier, P. J. & de Groot, R. J. (1995). The molecular genetics of feline coronaviruses: comparative sequence analysis of the ORF7a/7b transcription unit of different biotypes. Virology 212, 622-631.
19. Hicks, G. R. & Raikhel, N. V. (1995). Protein import into the nucleus: an integrated view. Annu Rev Cell Dev Biol 11, 155-188.
20. Hiscox, J. A., Wurm, T., Wilson, L., Britton, P., Cavanagh, D. & Brooks, G. (2001). The coronavirus infectious bronchitis virus nucleoprotein localizes to the nucleolus. J Virol 75, 506-512.
21. Jonassen, C. M., Jonassen, T. O. & Grinde, B. (1998). A common RNA motif in the 3′ end of the genomes of astroviruses, avian infectious bronchitis virus and an equine rhinovirus. J Gen Virol 79, 715-718.
22. Jordan, F. T. & Nassar, T. J. (1973). The combined influence of age of embryo and temperature and duration of incubation on the replication and yield of avian infectious bronchitis (IB) virus in the developing chick embryo. Avian Pathol 2, 279-294.
23. Klempner, M. S. & Shapiro, D. S. (2004). Crossing the species barrier - one small step to man, one giant leap to mankind. N Engl J Med 350, 1171-1172.
24. Kozak, M. (1995). Adherence to the first-AUG rule when a second AUG codon follows closely upon the first. Proc Natl Acad Sci U S A 92, 2662-2666.
25. Kozak, M. (1997). Recognition of AUG and alternative initiator codons is augmented by G in position + 4 but is not generally affected by the nucleotides in positions + 5 and + 6. EMBO J 16, 2482-2492.
26. Ksiazek, T. G., Erdman, D., Goldsmith, C. S. & 24 other authors (2003). A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med 348, 1953-1966.
27. Kuiken, T., Fouchier, R. A., Schutten, M. & 19 other authors (2003). Newly discovered coronavirus as the primary cause of severe acute respiratory syndrome. Lancet 362, 263-270.
28. Liu, D. X. & Inglis, S. C. (1992). Internal entry of ribosomes on a tricistronic mRNA encoded by infectious bronchitis virus. J Virol 66, 6143-6154.
29. Liu, S., Chen, J., Chen, J. & 7 other authors (2005). Isolation of avian infectious bronchitis coronavirus from domestic peafow1 (Pavo cristatus) and teal (Anas). J Gen Virol 86, 719-725.
30. Marra, M. A., Jones, S. J., Astell, C. R. & 56 other authors (2003). The genome sequence of the SARS-associated coronavirus. Science 300, 1399-1404.
31. Poon, L. L., Guan, Y., Nicholls, J. M., Yuen, K. Y. & Peiris, J. S. (2004). The aetiology, origins, and diagnosis of severe acute respiratory syndrome. Lancet Infect Dis 4, 663-671.
32. Ran, A. X., Xie, Y. H., Kong, Y. Y., Yang, G. Z., Zhang, Y. Z., Wang, Y. & Wu, X. F. (2004). Expression, purification and sublocalization of SARS-CoV nucleocapsid protein in insect cells. Acta Biochim Biophys Sin 36, 754-758.
33. Rest, J. S. & Mindell, D. P. (2003). SARS associated coronavirus has a recombinant polymerase and coronaviruses have a history of host-shifting. Infect Genet Evol 3, 219-225.
34. Robbins, J., Dilworth, S. M., Laskey, R. A. & Dingwall, C. (1991). Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence. Cell 64, 615-623.
35. Robertson, M. P., Igel, H., Baertsch, R., Haussler, D., Ares, M., Jr & Scott, W. G. (2005). The structure of a rigorously conserved RNA element within the SARS virus genome. PLoS Biol 3, E5.
36. Sapats, S. I., Ashton, F., Wright, P. J. & Ignjatovic, J. (1996a). Novel variation in the N protein of avian infectious bronchitis virus. Virology 226, 412-417.
37. Sapats, S. I., Ashton, F., Wright, P. J. & Ignjatovic, J. (1996b). Sequence analysis of the S1 glycoprotein of infectious bronchitis viruses: identification of a novel genotypic group in Australia. J Gen Virol 77, 413-418.
38. Singer, S. J. (1990). The structure and insertion of integral proteins in membranes. Annu Rev Cell Biol 6, 247-296.
39. Singh, M. (1999). A novel internal open reading frame product expressed from a polycistronic mRNA of porcine epidemic diarrhoea virus may not contribute to virus attenuation. J Gen Virol 80, 1959-1963.
40. Snijder, E. J., Bredenbeek, P. J., Dobbe, J. C. & 7 other authors (2003). Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J Mol Biol 331, 991-1004.
41. Stanhope, M. J., Brown, J. R. & Amrine-Madsen, H. (2004). Evidence from the evolutionary analysis of nucleotide sequences for a recombinant history of SARS-CoV. Infect Genet Evol 4, 15-19.
42. Stavrinides, J. & Guttman, D. S. (2004). Mosaic evolution of the severe acute respiratory syndrome coronavirus. J Virol 78, 76-82.
43. Stephensen, C. B., Casebolt, D. B. & Gangopadhyay, N. N. (1999). Phylogenetic analysis of a highly conserved region of the polymerase gene from 11 coronaviruses and development of a consensus polymerase chain reaction assay. Virus Res 60, 181-189.
44. Sun, Z. F. & Meng, X. J. (2004). Antigenic cross-reactivity between the nucleocapsid protein of severe acute respiratory syndrome (SARS) coronavirus and polyclonal antisera of antigenic group I animal coronaviruses: implication for SARS diagnosis. J Clin Microbiol 42, 2351-2352.
45. Traavik, T., Mehl, R. & Kjeldsberg, E. (1977). "Runde" virus, a coronavirus-like agent associated with seabirds and ticks. Arch Virol 55, 25-38.
46. Tung, F. Y., Abraham, S., Sethna, M., Hung, S. L., Sethna, P., Hogue, B. G. & Brian, D. A. (1992). The 9-kDa hydrophobic protein encoded at the 3′ end of the porcine transmissible gastroenteritis coronavirus genome is membrane-associated. Virology 186, 676-683.
47. Wang, D., Urisman, A., Liu, Y. T. & 11 other authors (2003). Viral discovery and sequence recovery using DNA microarrays. PLoS Biol 1, E2.
48. Williams, A. K., Wang, L., Sneed, L. W. & Collisson, E. W. (1993). Analysis of a hypervariable region in the 3′ non-coding end of the infectious bronchitis virus genome. Virus Res 28, 19-27.
49. Wurm, T., Chen, H., Hodgson, T., Britton, P., Brooks, G. & Hiscox, J. A. (2001). Localization to the nucleolus is a common feature of coronavirus nucleoproteins, and the protein may disrupt host cell division. J Virol 75, 9345-9356.
50. Zhou, M. & Collisson, E. W. (2000). The amino and carboxyl domains of the infectious bronchitis virus nucleocapsid protein interact with 3′ genomic RNA. Virus Res 67, 31-39.