메뉴 건너뛰기




Volumn 310, Issue 1-2, 2003, Pages 215-220

Turnover of binding sites for transcription factors involved in early Drosophila development

Author keywords

Binding site turnover; Developmental enhancers; Enhancer evolution; Positional weight matrices; Regulatory evolution

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 0037498017     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(03)00556-0     Document Type: Article
Times cited : (52)

References (31)
  • 1
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey T.L., Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2:1994;28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 2
    • 0023147228 scopus 로고
    • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters
    • Berg O.G., von Hippel P.H. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. J. Mol. Biol. 193:1987;723-750.
    • (1987) J. Mol. Biol. , vol.193 , pp. 723-750
    • Berg, O.G.1    Von Hippel, P.H.2
  • 3
    • 0034883255 scopus 로고    scopus 로고
    • Analysis of conserved non-coding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
    • Bergman C.M., Kreitman M. Analysis of conserved non-coding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11:2001;1335-1345.
    • (2001) Genome Res. , vol.11 , pp. 1335-1345
    • Bergman, C.M.1    Kreitman, M.2
  • 4
    • 0037154273 scopus 로고    scopus 로고
    • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
    • Berman B.P., Nibu Y., Pfeiffer B.D., Tomancak P., Celniker S.E., Levine M., Rubin G.M., Eisen M.B. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl. Acad. Sci. USA. 99:2002;757-762.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 757-762
    • Berman, B.P.1    Nibu, Y.2    Pfeiffer, B.D.3    Tomancak, P.4    Celniker, S.E.5    Levine, M.6    Rubin, G.M.7    Eisen, M.B.8
  • 5
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: The evolution of gene regulation and morphological diversity
    • Carroll S.B. Endless forms: the evolution of gene regulation and morphological diversity. Cell. 101:2000;577-580.
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 7
    • 0035986888 scopus 로고    scopus 로고
    • Evolution of transcription factor binding sites in Mammalian gene regulatory regions: Conservation and turnover
    • Dermitzakis E.T., Clark A.G. Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover. Mol. Biol. Evol. 19:2002;1114-1121.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1114-1121
    • Dermitzakis, E.T.1    Clark, A.G.2
  • 8
    • 0029655429 scopus 로고    scopus 로고
    • Quantitative discrimination of MEF2 sites
    • Fickett J.W. Quantitative discrimination of MEF2 sites. Mol. Cell. Biol. 16:1996;437-441.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 437-441
    • Fickett, J.W.1
  • 9
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz G.Z., Stormo G.D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics. 15:1999;563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 10
    • 0026548857 scopus 로고
    • Competition for overlapping sites in the regulatory region of the Drosophila gene Kruppel
    • Hoch M., Gerwin N., Taubert H., Jackle H. Competition for overlapping sites in the regulatory region of the Drosophila gene Kruppel. Science. 256:1992;94-97.
    • (1992) Science , vol.256 , pp. 94-97
    • Hoch, M.1    Gerwin, N.2    Taubert, H.3    Jackle, H.4
  • 11
    • 0027414665 scopus 로고
    • Conservation of regulatory elements controlling hairy pair-rule stripe formation
    • Langeland J.A., Carroll S.B. Conservation of regulatory elements controlling hairy pair-rule stripe formation. Development. 117:1993;585-596.
    • (1993) Development , vol.117 , pp. 585-596
    • Langeland, J.A.1    Carroll, S.B.2
  • 12
    • 0031866079 scopus 로고    scopus 로고
    • Expression of wingless in the Drosophila embryo: A conserved cis-acting element lacking conserved Ci-binding sites is required for patched-mediated repression
    • Lessing D., Nusse R. Expression of wingless in the Drosophila embryo: a conserved cis-acting element lacking conserved Ci-binding sites is required for patched-mediated repression. Development. 125:1998;1469-1476.
    • (1998) Development , vol.125 , pp. 1469-1476
    • Lessing, D.1    Nusse, R.2
  • 14
    • 0029899778 scopus 로고    scopus 로고
    • Identification and functional characterization of conserved promoter elements from glass: A retinal development gene of Drosophila
    • Liu H., Ma C., Moses K. Identification and functional characterization of conserved promoter elements from glass: a retinal development gene of Drosophila. Mech. Dev. 56:1996;73-82.
    • (1996) Mech. Dev. , vol.56 , pp. 73-82
    • Liu, H.1    Ma, C.2    Moses, K.3
  • 15
    • 0028826670 scopus 로고
    • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila
    • Ludwig M.Z., Kreitman M. Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol. Biol. Evol. 12:1995;1002-1011.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1002-1011
    • Ludwig, M.Z.1    Kreitman, M.2
  • 16
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
    • Ludwig M.Z., Patel N.H., Kreitman M. Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. Development. 125:1998;949-958.
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.Z.1    Patel, N.H.2    Kreitman, M.3
  • 17
    • 0034598832 scopus 로고    scopus 로고
    • Evidence for stabilizing selection in a eukaryotic enhancer element
    • Ludwig M.Z., Bergman C., Patel N.H., Kreitman M. Evidence for stabilizing selection in a eukaryotic enhancer element. Nature. 403:2000;564-567.
    • (2000) Nature , vol.403 , pp. 564-567
    • Ludwig, M.Z.1    Bergman, C.2    Patel, N.H.3    Kreitman, M.4
  • 18
    • 0028088884 scopus 로고
    • Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster
    • Lukowitz W., Schroder C., Glaser G., Hulskamp M., Tautz D. Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster. Mech. Dev. 45:1994;105-115.
    • (1994) Mech. Dev. , vol.45 , pp. 105-115
    • Lukowitz, W.1    Schroder, C.2    Glaser, G.3    Hulskamp, M.4    Tautz, D.5
  • 19
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 20
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN 2: Improvement of the segment-to-segment approach to multiple sequence alignment
    • Morgenstern B. DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics. 15:1999;211-218.
    • (1999) Bioinformatics , vol.15 , pp. 211-218
    • Morgenstern, B.1
  • 21
    • 0036122720 scopus 로고    scopus 로고
    • Extraction of functional binding sites from unique regulatory regions: The Drosophila early developmental enhancers
    • Papatsenko D.A., Makeev V.J., Lifanov A.P., Regnier M., Nazina A.G., Desplan C. Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers. Genome Res. 12:2002;470-481.
    • (2002) Genome Res. , vol.12 , pp. 470-481
    • Papatsenko, D.A.1    Makeev, V.J.2    Lifanov, A.P.3    Regnier, M.4    Nazina, A.G.5    Desplan, C.6
  • 22
    • 0031022635 scopus 로고    scopus 로고
    • Nucleotide variation and conservation at the dpp locus, a gene controlling early development in Drosophila
    • Richter B., Long M., Lewontin R.C., Nitasaka E. Nucleotide variation and conservation at the dpp locus, a gene controlling early development in Drosophila. Genetics. 145:1997;311-323.
    • (1997) Genetics , vol.145 , pp. 311-323
    • Richter, B.1    Long, M.2    Lewontin, R.C.3    Nitasaka, E.4
  • 23
    • 0030281034 scopus 로고    scopus 로고
    • From gradients to stripes in Drosophila embryogenesis: Filling in the gaps
    • Rivera-Pomar R., Jackle H. From gradients to stripes in Drosophila embryogenesis: filling in the gaps. Trends Genet. 12:1996;478-483.
    • (1996) Trends Genet. , vol.12 , pp. 478-483
    • Rivera-Pomar, R.1    Jackle, H.2
  • 24
    • 0028910659 scopus 로고
    • Molecular phylogeny and divergence times of drosophilid species
    • Russo C.A., Takezaki N., Nei M. Molecular phylogeny and divergence times of drosophilid species. Mol. Biol. Evol. 12:1995;391-404.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 391-404
    • Russo, C.A.1    Takezaki, N.2    Nei, M.3
  • 25
    • 0028179053 scopus 로고
    • Enhancer point mutation results in homeotic transformation in Drosophila
    • Shimell M.J., Simon J., Bender W., O'Connor M.B. Enhancer point mutation results in homeotic transformation in Drosophila. Science. 264:1994;968-971.
    • (1994) Science , vol.264 , pp. 968-971
    • Shimell, M.J.1    Simon, J.2    Bender, W.3    O'Connor, M.B.4
  • 26
    • 0031936185 scopus 로고    scopus 로고
    • Evolution of transcriptional regulatory elements within the promoter of a mammalian gene
    • Singh N., Barbour K.W., Berger F.G. Evolution of transcriptional regulatory elements within the promoter of a mammalian gene. Mol. Biol. Evol. 15:1998;312-325.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 312-325
    • Singh, N.1    Barbour, K.W.2    Berger, F.G.3
  • 27
    • 0026537051 scopus 로고
    • The origin of pattern and polarity in the Drosophila embryo
    • St Johnston D., Nusslein-Volhard C. The origin of pattern and polarity in the Drosophila embryo. Cell. 68:1992;201-219.
    • (1992) Cell , vol.68 , pp. 201-219
    • St Johnston, D.1    Nusslein-Volhard, C.2
  • 28
    • 0034251814 scopus 로고    scopus 로고
    • Evolutionary developmental biology and the problem of variation
    • Stern D.L. Evolutionary developmental biology and the problem of variation. Evolution. 54:2000;1079-1091.
    • (2000) Evolution , vol.54 , pp. 1079-1091
    • Stern, D.L.1
  • 29
    • 0034893582 scopus 로고    scopus 로고
    • Rapid evolution of cis-regulatory sequences via local point mutations
    • Stone J.R., Wray G.A. Rapid evolution of cis-regulatory sequences via local point mutations. Mol. Biol. Evol. 18:2001;1764-1770.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1764-1770
    • Stone, J.R.1    Wray, G.A.2
  • 30
    • 0024342867 scopus 로고
    • Comparison of the gap segmentation gene hunchback between Drosophila melanogaster and Drosophila virilis reveals novel modes of evolutionary change
    • Treier M., Pfeifle C., Tautz D. Comparison of the gap segmentation gene hunchback between Drosophila melanogaster and Drosophila virilis reveals novel modes of evolutionary change. EMBO J. 8:1989;1517-1525.
    • (1989) EMBO J. , vol.8 , pp. 1517-1525
    • Treier, M.1    Pfeifle, C.2    Tautz, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.