Detection of single nucleotide polymorphisms in 24 kDa dimeric α-amylase inhibitors from cultivated wheat and its diploid putative progenitors

Biochimica et Biophysica Acta - General Subjects

Volumn 1723, Issue 1-3, 2005, Pages 309-320

  Wang, Ji Rui ^a   Wei, Yu Ming ^a   Yan, Ze Hong ^a   Zheng, You Liang ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

24 kDa dimeric amylase inhibitor; Aegilops; Single nucleotide polymorphism; Triticum

Indexed keywords

ALANINE; AMYLASE INHIBITOR; DIMER; ISOLEUCINE; VALINE;

AMINO ACID SEQUENCE; ARTICLE; CLUSTER ANALYSIS; CODON; DIPLOIDY; GENE MUTATION; GENETIC CODE; HEXAPLOIDY; MOLECULAR WEIGHT; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STEM CELL; WHEAT;

AMINO ACID SEQUENCE; DIMERIZATION; DIPLOIDY; EVOLUTION; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPEN READING FRAMES; PLANT PROTEINS; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; TRITICUM;

AEGILOPS; AEGILOPS SPELTOIDES; TRITICUM; TRITICUM AESTIVUM;

EID: 19744373238     PISSN: 03044165     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbagen.2005.03.002     Document Type: Article

References (52)

1. D.G. Wang, J.B. Fan, C.J. Siao, A. Berno, P. Young, R. Sapolsky, G. Ghandour, N. Perkins, E. Winchester, J. Spencer, L. Kruglyak, L. Stein, T. Topaloglou, E. Hubble, E. Robinson, M. Mittmann, M.S. Morris, N. Shen, D. Kilburn, J. Rioux, C. Nusbaum, S. Rozen, T.J. Hudson, and E.S. Lander Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome Science 280 1998 1077 1082
2. A. Rafalski Novel genetic mapping tools in plants: SNPs and LD-based approaches Plant Sci. 162 2002 329 333
3. D.L. Remington, J.M. Thornsberry, Y. Matsuoka, L.M. Wilson, S.R. Whitt, J. Doebley, S. Kresovich, M.M. Goodman, and E.S. Buckler Structure of linkage disequilibrium and phenotypic associations in the maize genome Proc. Natl. Acad. Sci. U. S. A. 98 2001 11479 11484
4. M.I. Tenaillon, M.C. Swakins, A.D. Long, R.L. Gaut, J.F. Doebley, and B.S. Gaut Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.) Proc. Natl. Acad. Sci. U. S. A. 98 2001 9161 9166
5. F.S. Collins, M.S. Guyer, and A. Chakravarti Variations on a theme: cataloging human DNA sequence variations Science 278 1997 1580 1581
6. R.M. Harding, S.M. Fullerton, R.C. Griffiths, J. Bond, M.J. Cox, J.A. Schneider, D.S. Moulin, and J.B. Clegg Archaic African and Asian lineages in the genetic ancestry of modern humans Am. J. Hum. Genet. 60 1997 772 789
7. K. Garg, P. Green, and D.A. Nickerson Identification of candidate coding region single nucleotide polymorphisms in 165 human genes using assembled expressed sequence tags Genome Res. 9 1999 1087 1092
8. A. Rafalski Applications of single nucleotide polymorphisms in crop genetics Plant Biol. 5 2002 94 100
9. E.A. MacGregor, S. Janecek, and B. Svensson Relationship of sequence and structure to specificity in the α-amylase family of enzymes Biochim. Biophys. Acta 1546 2001 1 20
10. M.C. Silva, M. Da, M.F. Grossi, Sá. De, M.J. Chrispeels, R.C. Togawa, and G. Neshich Analysis of structural and physico-chemical parameters involved in the specificity of binding between a-amylases and their inhibitors Protein Eng. 13 2000 167 177
11. C.A. Ryan, and G. Pearce Systemin: a polypeptide signal for plant defensive genes Annu. Rev. Cell Dev. Biol. 14 1998 1 17
12. C.A. Ryan Protease inhibitors in plants: genes for improving defenses against insects and pathogens Annu. Rev. Phytopathol. 28 1990 425 449
13. M.P. Sales, I.R. Gerhardt, M.F. Grossi-de-Sá, and J. Xavier-Filho Do legumes storage proteins play a role in defending seeds against bruchids? Plant Physiol. 124 2000 515 522
14. M.J. Chrispeels, M.F. Grossi-de-Sá, and T.J.V. Higgins Genetic engineering with a-amylase inhibitors seeds resistant to bruchids Seed Sci. Res. 8 1998 257 263
15. A.M.R. Gatehouse, and J.A. Gatehouse Identifying proteins with insecticidal activity: use of encoding genes to produce insect-resistant transgenic crops Pest. Sci. 52 1998 165 175
16. A.V. Konarev Interaction of insect digestive enzymes with plant protein inhibitors and host-parasite co-evolution Euphytica 92 1996 89 94
17. O.L. Franco, D.J. Rigden, F.R. Melo, J.C. Bloch, C.P. Silva, and M.F. Grossi de Sá Activity of wheat α-amylase inhibitors towards bruchid α-amylases and structural explanation of observed specificities Eur. J. Biochem. 267 8 2000 1466 1473
18. R. Deponte, R. Parlamenti, V. Petrucci, V. Silano, and M. Tomasi Albumin a-amylase inhibitor families from wheat flour Cereal Chem. 53 1976 805 820
19. J. Mundy, J. Hejgaard, and I. Svendsen Characterization of a bifunctional wheat inhibitor of endogenous α-amylase and subtilisin FEBS Lett. 167 1984 210 214
20. V. Buonocore, T. Petrucci, and V. Silano Wheat protein inhibitors of a-amylase Phytochemistry 16 1977 811 820
21. J.E. Baker Interaction of partially-purified amylases from larval anagasta kuehniella (lepidoptera: pyralidae) with amylase inhibitors from wheat Comp. Biochem. Physiol. 9311 2 1989 239 246
22. V. Buonocore, M.G.D. Biasi, P. Giardina, E. Poreio, and V. Silano Purification and properties of an α-amylase tetrameric inhibitor from wheat kernel Biochim. Biophys. Acta 831 1985 40 48
23. L. Carrano, G. Nitti, V. Buonocore, C. Caporale, and E. Poerio An effective purification procedure of amylase and trypsin inhibitors from wheat flour; isolation of a new water-soluble Plant Sci. 65 1989 25 31
24. S. Strobl, P. Muhlhahn, R. Bernstein, R. Wiltscheck, K. Maskos, M. Wunderlich, R. Huber, R. Glockshuber, and T.A. Holak Determination of the three-dimensional structure of the bifunctional alpha-amylase/trypsin inhibitor from ragi seeds by NMR spectroscopy Biochemistry 34 26 1995 8281 8293
25. Y. Oda, T. Matsunaga, K. Fukuyama, T. Miyazaki, and T. Morimoto Tertiary and quaternary structures of 0.19 alpha-amylase inhibitor from wheat kernel determined by X-ray analysis at 2.06 A resolution Biochemistry 36 44 1997 13503 13511
26. N.K. Blake, B.R. Lehfeldt, A. Hemphill, X. Shan, and L.E. Talbert DNA sequence analysis suggests a monophyletic origin of the wheat B genome Proc. 9th Wheat Genet. Symp. 2 1998 14 16
27. J. Dvorak, P. Terlizzi, H.B. Zhang, and P. Resta The evolution of polyploid wheats: identification of the A genome donor species Genome 36 1993 21 31
28. O. Raskina, A. Belyyev, and E. Nevo Repetitive DNAs of wide emmer wheat Triticum dicocoides and their relation to S-genome species: molecular- cytogenetic analysis Genome 45 2 2002 391 401
29. Z. Lianquan, L. Dengcai, Y. Zehong, L. Xiujin, Z. Youliang, and Z. Yonghong Rapid changes of microsatellite flanking sequence in the allopolyploidization of new synthesized hexaploid wheat Sci. China, Ser. C, Life Sci. 47 6 2004 553 561
30. Z. Yan, Y. Wan, K. Liu, Y.L. Zheng, and D.W. Wang Identification of a novel HMW glutenin subunit and comparison of its amino acid sequence with those of homologous subunits Chin. Sci. Bull. 47 3 2002 220 225
31. J.R. Wang, Z.H. Yan, Y.M. Wei, and Y.L. Zheng A novel HMW glutenin subunit gene Ee1.5 from Elytrigia elongata (Host) Nevski J. Cereal Sci. 40 2004 289 294
32. J.F. Gibrat, J. Garnier, and B. Robson Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs J. Mol. Biol. 198 1987 425 443
33. G. Deléage, C. Combet, C. Blanchet, and C. Geourjon An integrated protein sequence analysis software with client/server capabilities Comput. Biol. Med. 31 4 2001 259 267
34. C. Aragoncillo, L. Rodriguez, P. Carbonero, and F. Garcia-Olmedo Chromosomal control of non-gliadin proteins from 70% ethanol extract of wheat endosperm Theor. Appl. Genet. 45 1975 322 326
35. C. Bedetti, A. Bozzini, V. Silano, and V. Luciano Amylase protein inhibitors and the role of Aegilops species in polyploid wheat speciation Biochim. Biophys. Acta 362 2 1974 299 307
36. G.T. Marth, I. Korf, M.D. Yandell, R.T. Yeh, Z. Gu, H. Zakeri, N.O. Stiziel, L. Hillier, P.Y. Kwok, and W.R. Gish A general approach to single-nucleotide polymorphism discovery Nat. Genet. 23 1999 452 456
37. L. Picoult-Newberg, T.E. Ideker, M.G. Pohl, S.L. Taylor, M.A. Donaldson, D.A. Nickerson, and M. Boyce-Jacino Mining SNPs from EST databases Genome Res. 9 1999 167 174
38. V.G. Battershell, and R.J. Henry High performance liquid chromatography of a-amylases from germinating wheat and complexes with the alpha-amylase inhibitor from barley J. Cereal Sci. 12 1990 73 81
39. S.J. Jarrett, R.J. Marschke, M.H. Symons, C.E. Gibson, G.P. Fox, and R.J. Henry Alpha-amylase/subtilisin inhibitor levels in Australian barleys J. Cereal Sci. 25 1997 261 266
40. D.N. Cooper, and M. Krawczak The mutational spectrum of single base-pair substitutions causing human genetic disease: patterns and predictions Hum. Genet. 85 1990 55 74
41. D.N. Cooper, and H. Youssoufian The CpG dinucleotide and human genetic disease Hum. Genet. 78 1988 151 155
42. L. Vittozzi, G. Morisi, and V. Silano Continuous automated assay of alpha-amylase inhibitors J. Sci. Food Agric. 27 5 1976 449 453
43. E. Poerio, C. Caporale, L. Carrano, P. Pucci, and V. Buonocore Assignment of the five disulphide bridges in an alpha-amylase inhibitor from wheat kernel by FAB/MS and Edman degradation Eur. J. Biochem. 1991 199595 199600
44. K. Maeda The complete amino-acid sequence of the endogenous α-amylase inhibitor in wheat Biochim. Biophys. Acta 871 1983 250 256
45. K. Maeda, S. Kakabayashi, and H. Matubara Complete amino acid sequence of an α-amylase inhibitor in wheat kernel (0.19-inhibitor) Biochim. Biophys. Acta 828 1985 213 221
46. V.D. Solemimani, B.R. Baum, and D.A. Johnson Efficient validation of single nucleotide polymorphisms in plants by allele-specific PCR, with an example from barley Plant. Mol. Biol. Report. 21 2003 281 288
47. R. Holliday, and W.G. Girgg DNA methylation mutation Mutat. Res. 285 1993 61 67
48. F. Payan Structural basis for the inhibition of mammalian and insect α-amylase by plant inhibitors Biochim. Biophys. Acta 1696 2004 171 180
49. G.H. Feng, M. Richardson, M.S. Chen, K.J. Kramer, T.D. Morgan, and G.R. Reeck α-Amylase inhibitors from wheat: a sequences and patterns of inhibition of insect and human α-amylases Insect Biochem. Mol. Biol. 26 1996 419 426
50. O.L. Franco, D.J. Rigden, F.R. Melo, and M.F. Grossi-de-Sá Plant a-amylase inhibitors and their interaction with insect a-amylases. Structure, function and potential for crop protection Eur. J. Biochem. 269 2002 397 412
51. T. Petrucci, A. Rab, M. Tomasi, and V. Silano Further characterization studies of the α-amylase protein inhibitor of gel electrophoretic mobility 0.19 from wheat kernel Biochim. Biophys. Acta 420 1976 288 297
52. M. Okuda, T. Satoh, N. Sakurai, K. Shibuya, H. Kaji, and T. Samejima Overexpression in Escherichia coli of chemically synthesized gene for active 0.19 alpha-amylase inhibitor from wheat kernel J. Biochem. 122 5 1997 918 926