-
1
-
-
0036612878
-
The 4-oxalocrotonate tautomerase family of enzymes: How nature makes new enzymes using a β-α-β structural motif
-
Whitman, C. P. (2002) The 4-oxalocrotonate tautomerase family of enzymes: How nature makes new enzymes using a β-α-β structural motif, Arch. Biochem. Biophys. 402, 1-13.
-
(2002)
Arch. Biochem. Biophys.
, vol.402
, pp. 1-13
-
-
Whitman, C.P.1
-
2
-
-
0033592378
-
Kinetic, stereochemical, and structural effects of mutations of the active site arginine residues in 4-oxalocrotonate tautomerase
-
Harris, T. K., Czerwinski, R. M., Johnson, W. H., Jr., Legler, P. M., Abeygunawardana, C., Massiah, M. A., Stivers, J. T., Whitman, C. P., and Mildvan, A. S. (1999) Kinetic, stereochemical, and structural effects of mutations of the active site arginine residues in 4-oxalocrotonate tautomerase, Biochemistry 38, 12343-12357.
-
(1999)
Biochemistry
, vol.38
, pp. 12343-12357
-
-
Harris, T.K.1
Czerwinski, R.M.2
Johnson Jr., W.H.3
Legler, P.M.4
Abeygunawardana, C.5
Massiah, M.A.6
Stivers, J.T.7
Whitman, C.P.8
Mildvan, A.S.9
-
3
-
-
0030060180
-
Enzymatic ketonization of 2-hydroxymuconate: Specificity and mechanism investigated by the crystal structures of two isomerases
-
Subramanya, H. S., Roper, D. I., Dauter, Z., Dodson, E. J., Davies, G. J., Wilson, K. S., and Wigley, D. B. (1996) Enzymatic ketonization of 2-hydroxymuconate: Specificity and mechanism investigated by the crystal structures of two isomerases, Biochemistry 35, 792-802.
-
(1996)
Biochemistry
, vol.35
, pp. 792-802
-
-
Subramanya, H.S.1
Roper, D.I.2
Dauter, Z.3
Dodson, E.J.4
Davies, G.J.5
Wilson, K.S.6
Wigley, D.B.7
-
4
-
-
0032553015
-
Crystal structure of 4-oxalocrotonate tautomerase inactivated by 2-oxo-3-pentynoate at 2.4 Å resolution: Analysis and implications for the mechanism of inactivation and catalysis
-
Taylor, A. B., Czerwinski, R. M., Johnson, W. H., Jr., Whitman, C. P., and Hackert, M. L. (1998) Crystal structure of 4-oxalocrotonate tautomerase inactivated by 2-oxo-3-pentynoate at 2.4 Å resolution: Analysis and implications for the mechanism of inactivation and catalysis, Biochemistry 37, 14692-14700.
-
(1998)
Biochemistry
, vol.37
, pp. 14692-14700
-
-
Taylor, A.B.1
Czerwinski, R.M.2
Johnson Jr., W.H.3
Whitman, C.P.4
Hackert, M.L.5
-
5
-
-
0030064737
-
Catalytic role of the ammo-terminal proline in 4-oxalocrotonate tautomerase: Affinity labeling and heteronuclear NMR studies
-
Stivers, J. T., Abeygunawardana, C., Mildvan, A. S., Hajipour, G., Whitman, C. P., and Chen, L. H. (1996) Catalytic role of the ammo-terminal proline in 4-oxalocrotonate tautomerase: Affinity labeling and heteronuclear NMR studies, Biochemistry 35, 803-813.
-
(1996)
Biochemistry
, vol.35
, pp. 803-813
-
-
Stivers, J.T.1
Abeygunawardana, C.2
Mildvan, A.S.3
Hajipour, G.4
Whitman, C.P.5
Chen, L.H.6
-
7
-
-
0030723733
-
Kinetic and structural effects of mutations of the catalytic amino-terminal proline in 4-oxalocrotonate tautomerase
-
Czerwinski, R. M., Johnson, W. H., Jr., Whitman, C. P., Harris, T. K., Abeygunawardana, C., and Mildvan, A. S. (1997) Kinetic and structural effects of mutations of the catalytic amino-terminal proline in 4-oxalocrotonate tautomerase, Biochemistry 36, 14551-14560.
-
(1997)
Biochemistry
, vol.36
, pp. 14551-14560
-
-
Czerwinski, R.M.1
Johnson Jr., W.H.2
Whitman, C.P.3
Harris, T.K.4
Abeygunawardana, C.5
Mildvan, A.S.6
-
9
-
-
0033592454
-
a values of active site residues and on the pH dependence of catalysis
-
a values of active site residues and on the pH dependence of catalysis, Biochemistry 38, 12358-12366.
-
(1999)
Biochemistry
, vol.38
, pp. 12358-12366
-
-
Czerwinski, R.M.1
Harris, T.K.2
Johnson Jr., W.H.3
Legler, P.M.4
Stivers, J.T.5
Mildvan, A.S.6
Whitman, C.P.7
-
10
-
-
0029962105
-
4-Oxalocrotonate tautomerase, a 41-kDa homohexamer: Backbone and side-chain resonance assignments, solution secondary structure, and location of active site residues by heteronuclear NMR spectroscopy
-
Stivers, J. T., Abeygunawardana, C., Whitman, C. P., and Mildvan, A. S. (1996) 4-Oxalocrotonate tautomerase, a 41-kDa homohexamer: Backbone and side-chain resonance assignments, solution secondary structure, and location of active site residues by heteronuclear NMR spectroscopy, Protein Sci. 5, 729-741.
-
(1996)
Protein Sci.
, vol.5
, pp. 729-741
-
-
Stivers, J.T.1
Abeygunawardana, C.2
Whitman, C.P.3
Mildvan, A.S.4
-
11
-
-
0030299991
-
15N NMR relaxation studies of free and inhibitor-bound 4-oxalocrotonate tautomerase: Backbone dynamics and entropy changes of an enzyme upon inhibitor binding
-
15N NMR relaxation studies of free and inhibitor-bound 4-oxalocrotonate tautomerase: Backbone dynamics and entropy changes of an enzyme upon inhibitor binding, Biochemistry 35, 16036-16047.
-
(1996)
Biochemistry
, vol.35
, pp. 16036-16047
-
-
Stivers, J.T.1
Abeygunawardana, C.2
Mildvan, A.S.3
Whitman, C.P.4
-
12
-
-
0028810542
-
Total chemical synthesis and catalytic properties of the enzyme enantiomers L- And D-4-oxalocrotonate tautomerase
-
Fitzgerald, M. C., Chernushevich, I., Standing, K. G., Kent, S. B. H., and Whitman, C. P. (1995) Total chemical synthesis and catalytic properties of the enzyme enantiomers L- and D-4-oxalocrotonate tautomerase, J. Am. Chem. Soc. 117, 11075-11080.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 11075-11080
-
-
Fitzgerald, M.C.1
Chernushevich, I.2
Standing, K.G.3
Kent, S.B.H.4
Whitman, C.P.5
-
13
-
-
2642570997
-
The protein backbone makes important contributions to 4-oxalocrotonate tautomerase enzyme catalysis: Understanding theory from experiment
-
Cisneros, G. A., Wang, M., Silinski, P., Fitzgerald, M. C., and Yang, W. (2004) The protein backbone makes important contributions to 4-oxalocrotonate tautomerase enzyme catalysis: Understanding theory from experiment, Biochemistry 43, 6885-6892.
-
(2004)
Biochemistry
, vol.43
, pp. 6885-6892
-
-
Cisneros, G.A.1
Wang, M.2
Silinski, P.3
Fitzgerald, M.C.4
Yang, W.5
-
14
-
-
5644246078
-
Electrostatic interactions dominate the catalytic contribution of Arg39 in 4-oxalocrotonate tautomerase
-
Metanis, N., Brik, A., Dawson, P. E., and Keinan E. (2004) Electrostatic interactions dominate the catalytic contribution of Arg39 in 4-oxalocrotonate tautomerase, J. Am. Chem. Soc. 126, 12726-12727.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 12726-12727
-
-
Metanis, N.1
Brik, A.2
Dawson, P.E.3
Keinan, E.4
-
15
-
-
0042431983
-
Ab initio QM/MM study shows there is no general acid in the reaction catalyzed by 4-oxalocrotonate tautomerase
-
Cisneros, G. A., Liu, H., Zhang, Y., and Yang, W. (2003) Ab initio QM/MM study shows there is no general acid in the reaction catalyzed by 4-oxalocrotonate tautomerase, J. Am. Chem. Soc. 125, 10384-10393.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10384-10393
-
-
Cisneros, G.A.1
Liu, H.2
Zhang, Y.3
Yang, W.4
-
16
-
-
0345628007
-
Inactivation of 4-oxalocrotonate tautomerase by 2-oxo-3-pentynoate
-
Johnson, W. H., Jr., Czerwinski, R. M., Fitzgerald, M. C., and Whitman, C. P. (1997) Inactivation of 4-oxalocrotonate tautomerase by 2-oxo-3-pentynoate, Biochemistry 36, 15724-15732.
-
(1997)
Biochemistry
, vol.36
, pp. 15724-15732
-
-
Johnson Jr., W.H.1
Czerwinski, R.M.2
Fitzgerald, M.C.3
Whitman, C.P.4
-
17
-
-
0037154884
-
Enzyme dynamics during catalysis
-
Eisenmesser, E. Z., Bosco, D. A., Akke, M., and Kern, D. (2002) Enzyme dynamics during catalysis, Science 295, 1520-1523.
-
(2002)
Science
, vol.295
, pp. 1520-1523
-
-
Eisenmesser, E.Z.1
Bosco, D.A.2
Akke, M.3
Kern, D.4
-
18
-
-
4744343045
-
Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair
-
Wolf-Watz, M., Thai, V., Henzler-Wildman, K., Hadjipavlou, G., Eisenmesser, E. Z., and Kern, D. (2004) Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair, Nat. Struct. Mol. Biol. 11, 945-949.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 945-949
-
-
Wolf-Watz, M.1
Thai, V.2
Henzler-Wildman, K.3
Hadjipavlou, G.4
Eisenmesser, E.Z.5
Kern, D.6
-
19
-
-
84860943575
-
Half site binding of substrates and inhibitors to 4-oxalocrotonate tautomerase
-
Philadelphia, PA, August 22-26, 2004, Abstract BIOL 99
-
th American Chemical Society National Meeting, Philadelphia, PA, August 22-26, 2004, Abstract BIOL 99.
-
(2004)
th American Chemical Society National Meeting
-
-
Azurmendi, H.F.1
Whitman, C.P.2
Miller, S.G.3
Mildvan, A.S.4
-
20
-
-
0001600177
-
Chemical and enzymatic ketonization of 2-hydroxymuconate, a conjugated enol
-
Whitman, C. P., Aird, B. A., Gillespie, W. R., and Stolowich, N. J. (1991) Chemical and enzymatic ketonization of 2-hydroxymuconate, a conjugated enol, J. Am. Chem. Soc. 113, 3154-3162.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 3154-3162
-
-
Whitman, C.P.1
Aird, B.A.2
Gillespie, W.R.3
Stolowich, N.J.4
-
21
-
-
0000519603
-
Ketonization of 2-hydroxy-2,4-pentadienoate by 4-oxalocrotonate tautomerase: Implications for the stereochemical course and the mechanism
-
Lian, H., and Whitman, C. P. (1993) Ketonization of 2-hydroxy-2,4- pentadienoate by 4-oxalocrotonate tautomerase: Implications for the stereochemical course and the mechanism, J. Am. Chem. Soc. 115, 7978-7984.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 7978-7984
-
-
Lian, H.1
Whitman, C.P.2
-
22
-
-
4143059215
-
4-Oxalocrotonate tautomerase, its homologue, YwhB, and active vinylpyruvate hydratase: Synthesis and evaluation of 2-fluoro substrate analogues
-
Johnson, W. H., Jr., Wang, S. C., Stanley, T. M., Czerwinski, R. M., Almrud, J. J., Poelerands, G. J., Murzin, A. G., and Whitman, C. P. (2004) 4-Oxalocrotonate tautomerase, its homologue, YwhB, and active vinylpyruvate hydratase: Synthesis and evaluation of 2-fluoro substrate analogues, Biochemistry 43, 10490-10501.
-
(2004)
Biochemistry
, vol.43
, pp. 10490-10501
-
-
Johnson Jr., W.H.1
Wang, S.C.2
Stanley, T.M.3
Czerwinski, R.M.4
Almrud, J.J.5
Poelerands, G.J.6
Murzin, A.G.7
Whitman, C.P.8
-
23
-
-
0001479670
-
A simple ultraviolet spectrophotometric method for the determination of protein
-
Waddell, W. J. (1956) A simple ultraviolet spectrophotometric method for the determination of protein, J. Lab. Clin. Med. 48, 311-314.
-
(1956)
J. Lab. Clin. Med.
, vol.48
, pp. 311-314
-
-
Waddell, W.J.1
-
24
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
25
-
-
0004040543
-
-
University of California, San Francisco
-
Goddard, T. D., and Kneller, D. G. (2004) Sparky 3, University of California, San Francisco.
-
(2004)
Sparky 3
-
-
Goddard, T.D.1
Kneller, D.G.2
-
26
-
-
0037207134
-
Interactions of the products 8-oxo-dGMP, dGMP, and pyrophosphate with the MutT nucleoside triphosphate pyrophosphohydrolase
-
Saraswat, V., Massiah, M. A., Lopez, G., Amzel, L. M., and Mildvan, A. S. (2002) Interactions of the products 8-oxo-dGMP, dGMP, and pyrophosphate with the MutT nucleoside triphosphate pyrophosphohydrolase, Biochemistry 41, 15566-15577.
-
(2002)
Biochemistry
, vol.41
, pp. 15566-15577
-
-
Saraswat, V.1
Massiah, M.A.2
Lopez, G.3
Amzel, L.M.4
Mildvan, A.S.5
-
27
-
-
77956904566
-
The molecular basis for enzyme regulation
-
(Boyer, P. D., Ed.) Academic Press, New York
-
Koshland, D. E., Jr. (1970) The molecular basis for enzyme regulation. The Enzymes, 3rd ed. (Boyer, P. D., Ed.) Academic Press, pp 341-396, New York.
-
(1970)
The Enzymes, 3rd Ed.
, pp. 341-396
-
-
Koshland Jr., D.E.1
-
28
-
-
4544325461
-
The structure of aqueous guanidinium solutions
-
Mason, P. E., Neilson, G. W., Enderby, J. E., Saboungi, M.-L., Dempsey, C. E., Mackerrell, A. D., Jr., and Brady, J. W. (2004) The structure of aqueous guanidinium solutions, J. Am, Chem. Soc. 126, 11462-11470.
-
(2004)
J. Am, Chem. Soc.
, vol.126
, pp. 11462-11470
-
-
Mason, P.E.1
Neilson, G.W.2
Enderby, J.E.3
Saboungi, M.-L.4
Dempsey, C.E.5
Mackerrell Jr., A.D.6
Brady, J.W.7
-
29
-
-
0018162507
-
Malate dehydrogenase. Kinetic studies of substrate activation of the supernatant enzyme by L-malate
-
Mueggler, P. A., and Wolfe, R. G. (1978) Malate dehydrogenase. Kinetic studies of substrate activation of the supernatant enzyme by L-malate, Biochemistry 17, 4615-4620.
-
(1978)
Biochemistry
, vol.17
, pp. 4615-4620
-
-
Mueggler, P.A.1
Wolfe, R.G.2
-
30
-
-
0016864342
-
Malate dehydrogenase, anticooperative NADH, and L-malate binding in ternary complexes with supernatant pig heart enzyme
-
Mueggler, P. A., Dahlquist, F. W., and Wolfe, R. G. (1975) Malate dehydrogenase, anticooperative NADH, and L-malate binding in ternary complexes with supernatant pig heart enzyme, Biochemistry 14, 3490-3497.
-
(1975)
Biochemistry
, vol.14
, pp. 3490-3497
-
-
Mueggler, P.A.1
Dahlquist, F.W.2
Wolfe, R.G.3
-
31
-
-
0003518480
-
-
John Wiley and Sons, New York
-
Segel, I. H. (1975) Enzyme kinetics, pp 377-387, John Wiley and Sons, New York.
-
(1975)
Enzyme Kinetics
, pp. 377-387
-
-
Segel, I.H.1
-
32
-
-
0012293235
-
-
DeLano Scientific, San Carlos, CA
-
DeLano, W. L. (2004) PyMOL, DeLano Scientific, San Carlos, CA.
-
(2004)
PyMOL
-
-
DeLano, W.L.1
|