-
1
-
-
0037133671
-
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
-
Akashi, H., and T. Gojobori. 2002. Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc. Natl. Acad. Sci. USA 99:3695-3700.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3695-3700
-
-
Akashi, H.1
Gojobori, T.2
-
2
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava, Y., Y. L. Wang, J. D. Storey, C. L. Liu, P. O. Brown, and D. Herschlag. 2003. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 100:3889-3894.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.L.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
Herschlag, D.6
-
3
-
-
0027249409
-
Molecular drift of the bride of sevenless (boss) gene in Drosophila
-
Ayala, F. J., and D. L. Hartl. 1993. Molecular drift of the bride of sevenless (boss) gene in Drosophila. Mol. Biol. Evol. 10:1030-1040.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1030-1040
-
-
Ayala, F.J.1
Hartl, D.L.2
-
4
-
-
0036682357
-
GenomeHistory: A software tool and its applications to fully sequenced genomes
-
Conant, G. C., and A. Wagner. 2002. GenomeHistory: a software tool and its applications to fully sequenced genomes. Nucleic Acids Res. 30:1-10.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1-10
-
-
Conant, G.C.1
Wagner, A.2
-
5
-
-
0032428151
-
Modeling stochastic gene expression: Implications for haploinsufficiency
-
Cook, D. L., L. N. Gerber, and S. J. Tapscott. 1998. Modeling stochastic gene expression: implications for haploinsufficiency. Proc. Natl. Acad. Sci. USA 95:15641-15646.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15641-15646
-
-
Cook, D.L.1
Gerber, L.N.2
Tapscott, S.J.3
-
6
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake, J. W., B. Charlesworth, D. Charlesworth, and J. F. Crow. 1998. Rates of spontaneous mutation. Genetics 148: 1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
7
-
-
4944245629
-
Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae
-
Fay, J. C., H. L. McCullough, P. D. Sniegowski, and M. B. Eisen. 2004. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol. 5:R26.
-
(2004)
Genome Biol.
, vol.5
-
-
Fay, J.C.1
McCullough, H.L.2
Sniegowski, P.D.3
Eisen, M.B.4
-
8
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster, J., I. Famili, P. Fu, B. Palsson, and J. Nielsen. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13:244-253.
-
(2003)
Genome Res.
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.4
Nielsen, J.5
-
9
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S., W. Huh, K. Bower, R. W. Howson, A. Belle, N. Dephoure, E. K. O'Shea, and J. S. Weissman. 2003. Global analysis of protein expression in yeast. Nature 425:737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
10
-
-
0036187351
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
-
Gu, Z., A. Cavalcanti, G.-C. Chen, P. Bouman, and W.-H. Li. 2002. Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Mol. Biol. Evol. 19:256-262.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 256-262
-
-
Gu, Z.1
Cavalcanti, A.2
Chen, G.-C.3
Bouman, P.4
Li, W.-H.5
-
11
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P., Y. Rochon, B. R. Franza, and R. Aebersold. 1999. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19:1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
12
-
-
0027978722
-
Selection intensity for codon bias
-
Hartl, D. L., E. N. Moriyama, and S. A. Sawyer. 1994. Selection intensity for codon bias. Genetics 138:227-234.
-
(1994)
Genetics
, vol.138
, pp. 227-234
-
-
Hartl, D.L.1
Moriyama, E.N.2
Sawyer, S.A.3
-
14
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W. K., J. V. Falvo, L. C. Gerke, A. S. Carroll, R. W. Howson, J. S. Weissman, and E. K. O'Shea. 2003. Global analysis of protein localization in budding yeast. Nature 425:686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
15
-
-
1442329652
-
Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae
-
Hurowitz, E. H., and P. O. Brown. 2004. Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae. Genome Biol. 5:R2.
-
(2004)
Genome Biol.
, vol.5
-
-
Hurowitz, E.H.1
Brown, P.O.2
-
16
-
-
0037079023
-
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
Ibarra, R. U., J. S. Edwards, and B. O. Palsson. 2002. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420:186-189.
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.U.1
Edwards, J.S.2
Palsson, B.O.3
-
17
-
-
1642334798
-
Population genetics of the wild yeast Saccharomyces paradoxus
-
Johnson, L. J., V. Koufopanou, M. R. Goddard, R. Hetherington, S. M. Schafer, and A. Burt. 2004. Population genetics of the wild yeast Saccharomyces paradoxus. Genetics 166:43-52.
-
(2004)
Genetics
, vol.166
, pp. 43-52
-
-
Johnson, L.J.1
Koufopanou, V.2
Goddard, M.R.3
Hetherington, R.4
Schafer, S.M.5
Burt, A.6
-
18
-
-
0025123264
-
Reb1, a yeast DNA-binding protein with many targets, is essential for cell-growth and bears some resemblance to the oncogene Myb
-
Ju, Q. D., B. E. Morrow, and J. R. Warner. 1990. Reb1, a yeast DNA-binding protein with many targets, is essential for cell-growth and bears some resemblance to the oncogene Myb. Mol. Cell. Biol. 10:5226-5234.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 5226-5234
-
-
Ju, Q.D.1
Morrow, B.E.2
Warner, J.R.3
-
19
-
-
0038349948
-
Sequencing and comparison of yeast genes to identify genes and regulatory elements
-
Kellis, M., N. Patterson, M. Endrizzi, B. Birren, and E. S. Lander. 2003. Sequencing and comparison of yeast genes to identify genes and regulatory elements. Nature 423:241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
20
-
-
0345306751
-
The origins of genome complexity
-
Lynch, M., and J. Conery. 2003. The origins of genome complexity. Science 302:1151-1155.
-
(2003)
Science
, vol.302
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.2
-
21
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
22
-
-
0021891865
-
Eeukaryotic protein synthesis
-
Moldave, K. 1985. Eeukaryotic protein synthesis. Annu. Rev. Biochem. 54:1109-1149.
-
(1985)
Annu. Rev. Biochem.
, vol.54
, pp. 1109-1149
-
-
Moldave, K.1
-
23
-
-
0034064282
-
Evolution and variation of the yeast (Saccharomyces) genome
-
Mortimer, R. K. 2000. Evolution and variation of the yeast (Saccharomyces) genome. Genome Res. 10:403-409.
-
(2000)
Genome Res.
, vol.10
, pp. 403-409
-
-
Mortimer, R.K.1
-
24
-
-
0003742927
-
-
Sinauer Associates, Sunderland, Mass
-
Neidhardt, F. C., J. Ingraham, and M. Schaechter. 1990. Physiology of the bacterial cell. Sinauer Associates, Sunderland, Mass.
-
(1990)
Physiology of the Bacterial Cell
-
-
Neidhardt, F.C.1
Ingraham, J.2
Schaechter, M.3
-
25
-
-
0030822809
-
The coalescent process with selfing
-
Nordborg, M., and P. Donnelly. 1997. The coalescent process with selfing. Genetics 146:1185-1195.
-
(1997)
Genetics
, vol.146
, pp. 1185-1195
-
-
Nordborg, M.1
Donnelly, P.2
-
27
-
-
0036789519
-
Variation in gene expression within and among natural populations
-
Oleksiak, M. F., G. A. Churchill, and D. L. Crawford. 2002. Variation in gene expression within and among natural populations. Nat. Genet. 32:261-266.
-
(2002)
Nat. Genet.
, vol.32
, pp. 261-266
-
-
Oleksiak, M.F.1
Churchill, G.A.2
Crawford, D.L.3
-
28
-
-
0041704531
-
Evolution of cis-regulatory elements in duplicated genes of yeast
-
Papp, B., C. Pal, and L. D. Hurst. 2003. Evolution of cis-regulatory elements in duplicated genes of yeast. Trends Genet. 19:417-422.
-
(2003)
Trends Genet.
, vol.19
, pp. 417-422
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
29
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt, J. M., J. Petty, I. Riba-Garcia, D. H. L. Robertson, S. J. Gaskell, S. G. Oliver, and R. J. Beynon. 2002. Dynamics of protein turnover, a missing dimension in proteomics. Mol. Cell. Proteomics 1:579-591.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.L.4
Gaskell, S.J.5
Oliver, S.G.6
Beynon, R.J.7
-
30
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin, G. M., M. D. Yandell, J. R. Wortman et al. (52 co-authors). 2000. Comparative genomics of the eukaryotes. Science 287:2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
-
31
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
Segre, D., D. Vitkup, and G. Church. 2002. Analysis of optimality in natural and perturbed metabolic networks. Proc. Natl. Acad. Sci. USA 99:15112-15117.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15112-15117
-
-
Segre, D.1
Vitkup, D.2
Church, G.3
-
32
-
-
0023650543
-
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp, P. M., and W.-H. Li. 1986. The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15:1281-1295.
-
(1986)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.-H.2
-
33
-
-
0025978949
-
Getting started with yeast
-
Sherman, F. 1991. Getting started with yeast. Methods. Enzymol. 194:3-21.
-
(1991)
Methods. Enzymol.
, vol.194
, pp. 3-21
-
-
Sherman, F.1
-
35
-
-
0037572260
-
Population genetic variation in genome-wide gene expression
-
Townsend, J. P., D. Cavalieri, and D. L. Haiti. 2003. Population genetic variation in genome-wide gene expression. Mol. Biol. Evol. 20:955-963.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 955-963
-
-
Townsend, J.P.1
Cavalieri, D.2
Haiti, D.L.3
-
36
-
-
0029861143
-
The N-end rule: Functions, mysteries, uses
-
Varshavsky, A. 1996. The N-end rule: functions, mysteries, uses. Proc. Natl. Acad. Sci. USA 93:12142-12149.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 12142-12149
-
-
Varshavsky, A.1
-
37
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Wang, Y. L., C. L. Liu, J. D. Storey, R. J. Tibshirani, D. Herschlag, and P. O. Brown. 2002. Precision and functional specificity in mRNA decay. Proc. Natl. Acad. Sci. USA 99:5860-5865.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5860-5865
-
-
Wang, Y.L.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
38
-
-
3042722019
-
Evolutionary changes in cis and trans gene regulation
-
Wittkopp, P. J., B. K. Haerum, and A. G. Clark. 2004. Evolutionary changes in cis and trans gene regulation. Nature 430:85-88.
-
(2004)
Nature
, vol.430
, pp. 85-88
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
|