TrEST, trGEN and Hits: Access to databases of predicted protein sequences

Nucleic Acids Research

Volumn 29, Issue 1, 2001, Pages 148-151

  Pagni, Marco ^a   Iseli, Christian ^a   Junier, Thomas ^a   Falquet, Laurent ^a   Jongeneel, Victor ^a   Bucher, Philipp ^a,b  

^a LUDWIG INSTITUTE FOR CANCER RESEARCH   (Switzerland)

^b SWISS INST FOR EXP CANCER RESEARCH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; EXPRESSED SEQUENCE TAG; GENE; GENE STRUCTURE; HYPOTHESIS; INTERNET; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STANDARD; TECHNIQUE;

EID: 0035175273     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.1.148     Document Type: Article

References (14)

1. Searching the expressed sequence tag (EST) databases: Panning for genes
2. Pieces of the puzzle: Expressed sequence tags and the catalog of human genes
3. CAP3: A DNA sequence assembly program
4. ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
5. Finding the genes in genomic DNA
6. A flexible motif search technique based on generalized profiles
7. Hidden Markov models in computational biology. Applications to protein modeling
8. The Pfam protein families database
9. SMART: A web-based tool for the study of genetically mobile domains
10. InterPro - An integrated documentation resource for protein families, domains and functional sites
11. The PROSITE database, its status in 1999
12. The discoidin domain family revisited: New members from prokaryotes and a homology-based fold prediction
13. SEView: A java applet for browsing molecular sequence data
14. Dotlet: Diagonal plots in a web browser