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Volumn 4, Issue 1, 2005, Pages

Multiple testing and data adaptive regression: An application to HIV-1 sequence data

Author keywords

Bootstrap; Codon; Generalized family wise error rate; HIV 1; Multiple testing; Prediction; Tail probability of the proportion of false positives; Type I error; Variable selection

Indexed keywords

PROTEINASE; RNA DIRECTED DNA POLYMERASE;

EID: 18944374818     PISSN: 15446115     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1110     Document Type: Article
Times cited : (5)

References (21)
  • 1
    • 18944401922 scopus 로고    scopus 로고
    • HIV-1: Molecular Biology and Pathogenesis - Clinical Applications
    • Academic Press
    • J. August, Ferid Murad, and Kuan-Teh Jeang, editors. HIV-1: Molecular Biology and Pathogenesis - Clinical Applications, volume 49 of Advances in Pharmacology. Academic Press, 2000.
    • (2000) Advances in Pharmacology , vol.49
    • August, J.1    Murad, F.2    Jeang, K.-T.3
  • 2
    • 0036838224 scopus 로고    scopus 로고
    • Evolution of Phenotypic Drug Susceptibility and Viral Replication Capacity during Long-Term Virologic Failure of Protease Inhibitor Therapy in Human Immunodeficiency Virus-Infected Adults
    • Jason D. Barbour, Terri Wrin, Robert M. Grant, Jeffrey N. Martin, Mark R. Segal, Christos J. Petropoulos, and Steven G. Deeks. Evolution of Phenotypic Drug Susceptibility and Viral Replication Capacity during Long-Term Virologic Failure of Protease Inhibitor Therapy in Human Immunodeficiency Virus-Infected Adults. Journal of Virology, 76(21):11104-11112, 2002.
    • (2002) Journal of Virology , vol.76 , Issue.21 , pp. 11104-11112
    • Barbour, J.D.1    Wrin, T.2    Grant, R.M.3    Martin, J.N.4    Segal, M.R.5    Petropoulos, C.J.6    Deeks, S.G.7
  • 3
    • 0347995130 scopus 로고    scopus 로고
    • Treatment of Antiretroviral-drug-resistant HIV-1 Infection
    • Steven G. Deeks. Treatment of Antiretroviral-drug-resistant HIV-1 Infection. The Lancet, 362:2002-2011, 2003.
    • (2003) The Lancet , vol.362 , pp. 2002-2011
    • Deeks, S.G.1
  • 5
    • 14044252027 scopus 로고    scopus 로고
    • Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates
    • Article 13
    • Sandrine Dudoit, Mark J. van der Laan, and Katherine S. Pollard. Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004. URL http://www.bepress.com/sagmb/vol3/iss1/art13. Article 13.
    • Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1 , pp. 2004
    • Dudoit, S.1    Van Der Laan, M.J.2    Pollard, K.S.3
  • 6
    • 0242269929 scopus 로고    scopus 로고
    • Protease and Reverse Transcriptase Mutation Patterns in HIV Type 1 Isolates from Heavily Treated Persons: Comparison of Isolates from Northern California with Isolates from Other Regions
    • Matthew J. Gonzales, Ilana Belitskaya, Kathryn M. Dupnik, Soo-Yon Rhee, and Robert W. Shafer. Protease and Reverse Transcriptase Mutation Patterns in HIV Type 1 Isolates from Heavily Treated Persons: Comparison of Isolates from Northern California with Isolates from Other Regions. AIDS Reseach and Human Retroviruses, 19(10):909-915, 2003.
    • (2003) AIDS Reseach and Human Retroviruses , vol.19 , Issue.10 , pp. 909-915
    • Gonzales, M.J.1    Belitskaya, I.2    Dupnik, K.M.3    Rhee, S.-Y.4    Shafer, R.W.5
  • 7
    • 0030926277 scopus 로고    scopus 로고
    • Broad Spectrum of in Vivo Fitness of Human Immunodeficiency Virus Type 1 Subpopulations Differing at Reverse Transcriptase Codons 41 and 215
    • Jaap Goudsmit, Anthony de Ronde, Ester de Rooij, and Rob de Boer. Broad Spectrum of in Vivo Fitness of Human Immunodeficiency Virus Type 1 Subpopulations Differing at Reverse Transcriptase Codons 41 and 215. Journal of Virology, 71(6):4479-4484, 1997.
    • (1997) Journal of Virology , vol.71 , Issue.6 , pp. 4479-4484
    • Goudsmit, J.1    De Ronde, A.2    De Rooij, E.3    De Boer, R.4
  • 9
    • 0032928065 scopus 로고    scopus 로고
    • Replicative Fitness of Protease Inhibitor-Resistant Mutants of Human Immunodeficiency Virus Type 1
    • Javier Martinez-Picado, Anu V. Savara, Lorraine Sutton, and Richard T. D'Aquila. Replicative Fitness of Protease Inhibitor-Resistant Mutants of Human Immunodeficiency Virus Type 1. Journal of Virology, 73(5):3744-3752, 1999.
    • (1999) Journal of Virology , vol.73 , Issue.5 , pp. 3744-3752
    • Martinez-Picado, J.1    Savara, A.V.2    Sutton, L.3    D'Aquila, R.T.4
  • 13
    • 13244272617 scopus 로고    scopus 로고
    • Relating HIV-1 Sequence Variation to Replication Capacity via Trees and Forests
    • Article 2
    • Mark R. Segal, Jason D. Barbour, and Robert M. Grant. Relating HIV-1 Sequence Variation to Replication Capacity via Trees and Forests. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004. URL http://www.bepress.com/sagmb/vol3/iss1/art2. Article 2.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Segal, M.R.1    Barbour, J.D.2    Grant, R.M.3
  • 14
    • 0032103187 scopus 로고    scopus 로고
    • Multiple Concurrent Reverse Transcriptase and Protease Mutations and Multidrug Resistance of HIV-1 Isolates from Heavily Treated Patients
    • Robert W. Shafer, Mark A. Winters, Sarah Palmer, and Thomas C. Merigan. Multiple Concurrent Reverse Transcriptase and Protease Mutations and Multidrug Resistance of HIV-1 Isolates from Heavily Treated Patients. Annals of Internal Medicine, 128(11):906-911, 1998.
    • (1998) Annals of Internal Medicine , vol.128 , Issue.11 , pp. 906-911
    • Shafer, R.W.1    Winters, M.A.2    Palmer, S.3    Merigan, T.C.4
  • 15
    • 0038064877 scopus 로고    scopus 로고
    • A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies
    • Theoretical Biology and Biophysics Group at Los Alamos National Laboratory
    • Robert W. Shafer, Kathryn M. Dupnik, Mark A. Winters, and Susan H. Eshleman. A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies. In HIV Sequencing Compendium, pages 83-133. Theoretical Biology and Biophysics Group at Los Alamos National Laboratory, 2001.
    • (2001) HIV Sequencing Compendium , pp. 83-133
    • Shafer, R.W.1    Dupnik, K.M.2    Winters, M.A.3    Eshleman, S.H.4
  • 16
    • 18544371304 scopus 로고    scopus 로고
    • Deletion/Substitution/Addition Algorithm in Learning with Applications in Genomics
    • Article 18
    • Sandra E. Sinisi and Mark J. van der Laan. Deletion/Substitution/Addition Algorithm in Learning with Applications in Genomics. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004. URL http://www.bepress.com/sagmb/ vol3/iss1/art18. Article 18.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Sinisi, S.E.1    Van Der Laan, M.J.2
  • 17
    • 1342290276 scopus 로고    scopus 로고
    • Effect of Polymorphisms on the Replication Capacity of Protease Inhibitor-Resistant HIV-1 Variants under Drug Pressure
    • Carlos Sune, Lyndall Brennan, David R. Stover, and Thomas Klimkait. Effect of Polymorphisms on the Replication Capacity of Protease Inhibitor-Resistant HIV-1 Variants under Drug Pressure. Clinical Microbiology and Infection, 10(2):119-129, 2004.
    • (2004) Clinical Microbiology and Infection , vol.10 , Issue.2 , pp. 119-129
    • Sune, C.1    Brennan, L.2    Stover, D.R.3    Klimkait, T.4
  • 18
    • 1042274712 scopus 로고    scopus 로고
    • Unified Methods for Censored Longitudinal Data and Causality
    • Springer
    • Mark J. van der Laan and James M. Robins. Unified Methods for Censored Longitudinal Data and Causality. Springer Series in Statistics. Springer, 2003.
    • (2003) Springer Series in Statistics
    • Van Der Laan, M.J.1    Robins, J.M.2
  • 19
    • 14644413619 scopus 로고    scopus 로고
    • Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives
    • Article 15
    • Mark J. van der Laan, Sandrine Dudoit, and Katherine S. Pollard. Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives. Statistical Applications in Genetics and Molecular Biology, 3(1), 2004. URL http://www.bepress.com/sagmb/vol3/iss1/art15. Article 15.
    • Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1 , pp. 2004
    • Van Der Laan, M.J.1    Dudoit, S.2    Pollard, K.S.3
  • 20
    • 20244387096 scopus 로고    scopus 로고
    • Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatment
    • Thomas D. Wu, Celia A. Schi er, Matthew J. Gonzales, Jonathan Tyalor, Rami Kantor, Sunwen Chou, Dennis Israelski, Andrew R. Zolopa, W. Jeffrey Fessel, and Robert W. Shafer. Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatment. Journal of Virology, 77(8):4836-4847, 2003.
    • (2003) Journal of Virology , vol.77 , Issue.8 , pp. 4836-4847
    • Wu, T.D.1    Schiffer, C.A.2    Gonzales, M.J.3    Tyalor, J.4    Kantor, R.5    Chou, S.6    Israelski, D.7    Zolopa, A.R.8    Fessel, W.J.9    Shafer, R.W.10
  • 21
    • 0031946007 scopus 로고    scopus 로고
    • Loss of Viral Fitness Associated with Multiple Gag and Gag-Pol Processing Defects in Human Immunodeficiency Virus Type 1 Variants Selected for Resistance to Protease Inhibitors in vivo
    • Veronique Zennou, Fabrizio Mammano, Sylvie Paulous, Dominique Mathez, and Francois Clavel. Loss of Viral Fitness Associated with Multiple Gag and Gag-Pol Processing Defects in Human Immunodeficiency Virus Type 1 Variants Selected for Resistance to Protease Inhibitors in vivo. Journal of Virology, 72(4):3300-3306, 1998.
    • (1998) Journal of Virology , vol.72 , Issue.4 , pp. 3300-3306
    • Zennou, V.1    Mammano, F.2    Paulous, S.3    Mathez, D.4    Clavel, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.