Identification, phylogeny, and evolution of retroviral elements based on their envelope genes

Journal of Virology

Volumn 75, Issue 23, 2001, Pages 11709-11719

  Benit L ^a   Dessen, P ^a   Heidmann, T ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

POL PROTEIN; PROTEIN SUBUNIT; RNA DIRECTED DNA POLYMERASE;

ARTICLE; DATA BASE; EVOLUTION; GENE FUNCTION; GENETIC CONSERVATION; IMMUNE DEFICIENCY; LIFE CYCLE; MEMBRANE FUSION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; RETROVIRUS; UNINDEXED SEQUENCE; VIRUS ENVELOPE; VIRUS GENE; VIRUS RECOMBINATION;

AMINO ACID SEQUENCE; EVOLUTION, MOLECULAR; GENE PRODUCTS, ENV; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROVIRIDAE; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0035164155     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.75.23.11709-11719.2001     Document Type: Article

References (53)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Envelope gene of the human endogenous retrovirus HERV-W encodes a functional retrovirus envelope
3. Identification of a cellular cofactor required for infection by feline leukemia virus
4. ERV-L elements: A family of endogenous retrovirus-like elements active throughout the evolution of mammals
5. Positional cloning of the mouse retrovirus restriction gene Fv1
6. The envelope of Mason-Pfizer monkey virus has immunosuppressive properties
7. An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor
8. The GP-protein of Marburg virus contains the region similar to the 'immunosuppressive domain' of oncogenic retrovirus P15E proteins
9. Heptad repeat sequences are located adjacent to hydrophobic regions in several types of virus fusion glycoproteins
10. Core structure of gp41 from the HIV envelope glycoprotein
11. Major pol gene progenitors in the evolution of oncoviruses
12. Inhibition of lymphocyte proliferation by a synthetic peptide homologous to retroviral envelope proteins
13. Retrovirus phylogeny and evolution
14. Biochemical evidence that MCF murine leukemia viruses are envelope (env) gene recombinants
15. Retrovirus envelope domain at 1.7 angstrom resolution
16. PHYLIP - Phylogeny inference package
17. A general model for the transmembrane proteins of HIV and other retroviruses
18. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
19. A novel exogenous retrovirus sequence identified in humans
20. Fv-4 resistance gene: A truncated endogenous murine leukemia virus with ecotropic interference properties
21. Constructing primate phylogenies from ancient retrovirus sequences
22. Definition of an amino-terminal domain of the human T-cell leukemia virus type 1 envelope surface unit that extends the fusogenic range of an ecotropic murine leukemia virus
23. Crystal structure of human T cell leukemia virus type 1 gp21 ectodomain crystallized as a maltose-binding protein chimera reveals structural evolution of retroviral transmembrane proteins
24. Phylogenetic analyses of 55 retroelements on the basis of the nucleotide and product amino acid sequences of the pol gene
25. Evolutionary analyses of the human genome
26. The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
27. Novel mouse type D endogenous proviruses and ETn elements share long terminal repeat and internal sequences
28. Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution
29. Papio cynocephalus endogenous retrovirus among Old World monkeys: Evidence for coevolution and ancient cross-species transmissions
30. Tumor cells expressing a retroviral envelope escape immune rejection in vivo
31. The full-length envelope of an HERV-H human endogenous retrovirus has immunosuppressive properties
32. 'DNA Strider': A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers
33. Ancestry of a human endogenous retrovirus family
34. Sequence comparisons of retroviral proteins: Relative rates of change and general phylogeny
35. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
36. Recombination in HIV-1
37. Inhibition of protein kinase C and anti-CD3-induced Ca2+ influx in Jurkat T cells by a synthetic peptide with sequence identity to HIV-1 gp41
38. Complete nucleotide sequence of the genome of bovine leukemia virus: Its evolutionary relationship to other retroviruses
39. LearnCoil-VMF: Computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins
40. Immunosuppressive activity of the retroviral envelope protein p15E and its possible relationship to neoplasia
41. Receptor interference groups of 20 retroviruses plating on human cells
42. Nucleotide sequence of Mason-Pfizer monkey virus: An immunosuppressive D-type retrovirus
43. Defective retroviruses can disperse in the human genome by intracellular transposition
44. Reverse transcriptase and the generation of retroviral DNA
45. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
46. Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database
47. Comparative sequence analysis and predictions for the envelope glycoproteins of foamy viruses
48. Atomic structure of the ectodomain from HIV-1 gp41
49. Endogenous human retroviruses
50. Marburg virus gene 4 encodes the virion membrane protein, a type I transmembrane glycoprotein
51. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution
52. Origin and evolution of retroelements based upon their reverse transcriptase sequences
53. Rate and mechanism of nonhomologous recombination during a single cycle of retroviral replication