cDNA-AFLP reveals genes differentially expressed during the hypersensitive response of cassava

Molecular Plant Pathology

Volumn 6, Issue 2, 2005, Pages 113-123

  Kemp, Benjamin P ^a   Beeching, John R ^a   Cooper, Richard M ^a  

^a University of Bath   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); MANIHOT ESCULENTA; PSEUDOMONAS; PSEUDOMONAS SYRINGAE; XANTHOMONAS; XANTHOMONAS AXONOPODIS PV. MANIHOTIS;

EID: 17644427743     PISSN: 14646722     EISSN: None     Source Type: Journal    
DOI: 10.1111/J.1364-3703.2005.00268.X     Document Type: Article

References (82)

1. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
2. Attwood, T.K., Beck, M.E., Bleasby, A.J. and Parry-Smith, D.J. (1994) PRINTS - A database of protein motif fingerprints. Nucleic Acids Res. 22, 3590-3596.
3. Bachem., C.W.B., Van Der Hoeven, R.S., De Bruijn, S.M., Vreugdenhil, D., Zabeau, M. and Visser, R.G.F. (1996) Visualisation of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J. 9, 745-753.
4. Bak, S., Tax, F.E., Feldmann, K.A., Galbralth, D.W. and Feyerelsen, R. (2001) CYP83B1, a cytochrome P450 at the metabolic branchpoint in auxin and indole glucosinolate biosynthesis in Arabidopsis thaliana. Plant Cell, 13, 101-111.
5. Beers, E.P., Woffenden, B.J. and Zhao, C. (2000) Plant proteolytic enzymes: possible roles during programmed cell death. Plant Mol. Biol. 44, 399-415.
6. Beggs, C.J., Kuhn, K., Bocker, R. and Wellmann, E. (1987) Phytochrome-induced flavonoid biosynthesis in mustard (Sinapis alba) cotyledons - enzymatic control and differential regulation of anthocyanin and quercetin formation. Planta, 172, 121-126.
7. Bleecker, A.B. and Kende, H. (2000) Ethylene: a gaseous signal molecule in plants. Annu. Rev. Cell Dev. Biol. 16, 1-18.
8. Blumwald, E., Aharon, G.S. and Lam, B.C.H. (1998) Early signal transduction pathways in plant-pathogen interactions. Trends Plant Sci. 3, 42-346.
9. Boerjan, W., Ralph, J. and Baucher, M. (2003) Lignin Biosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 54, 519-546.
10. Christie, P.J., Alfenito, M.R. and Walbot, V. (1994) Impact of low-temperature stress on general phenylpropanoid and anthocyanin pathways - enhancement of transcript abundance and anthocyanin pigmentation in maize seedlings. Planta, 194, 541-549.
11. Church, G.M. and Gilbert, W. (1984) Genomic sequencing. Proc. Natl Acad. Sci. USA, 81, 1991-1995.
12. Cooper, R.M., Kemp, B., Day, R., Gomez-Vasquez, R. and Beeching, J.R. (2001) Pathogenicity and resistance in Xanthomonas blight of cassava. In Plant Pathogenic Bacteria (De Boer, S.H., ed.). Dordecht: Kluwer, pp. 319-323.
13. Cortés, D.F., Reilly, K., Beeching, J.R. and Tohme, J. (2002) Mapping genes implicated in post-harvest physiological deterioration in cassava (Manihot esculenta Crantz). Euphytica, 128, 47-53.
14. Coux, O., Tanaka, K. and Goldberg, A.L. (1996) Structure and functions of the 20S and 26S proteasome. Annu. Rev. Biochem. 65, 801-847.
15. Dangl, J.L. and Jones, J.D.G. (2001) Plant pathogens and integrated defence responses to infection. Nature, 411, 826-833.
16. Dixon, R.A. (2001) Natural products and plant disease resistance. Nature, 411, 843-847.
17. Dixon, R.A. and Paiva, N.L. (1995) Stress-induced phenylpropanoid metabolism. Plant Cell, 7, 1085-1097.
18. Durrant, W.E., Rowland, O., Piedras, P., Hammond-Kosack, K.E. and Jones, J.D.G. (2000) cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell. 12, 963-977.
19. Edwards, R. (1996) S-adenosyl-L-methionine metabolism in alfalfa cell cultures following treatment with fungal elicitors. Phytochemistry, 43, 1163-1169.
20. Ellis, C., Turner, J.G. and Devoto, A. (2002) Protein complexes mediate signalling in plant responses to hormones, light, sucrose and pathogens. Plant Mol. Biol. 50, 971-980.
21. Eulgem, T., Rushton, P.J., Robatzek, S. and Somssich, I.E. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5, 199-205.
22. Feldmann, K.A. (2001) Cytochrome P450s as genes for crop improvement. Curr. Opin. Plant Biol. 4, 162-167.
23. Fregene, M., Angel, F., Gomez, R., Rodriguez, F., Chavarriaga, P., Roca, W., Tohme, J. and Bonierbale, M. (1997) A molecular genetic map of cassava (Manihot esculenta Crantz). Theor. Appl. Genet. 95, 431-441.
24. Frey, M., Choomet, P., Glawischnig, E., Strettnet, C., Grün, S., Inklmair, A., Eeisenrich, W., Bacher, A., Meeley, R.B., Briggs, S.P., Simcox, K. and Gierl, A. (1997) Analysis of a chemical plant defense mechanism in grasses. Science, 277, 696-699.
25. Goffner, D., Campbell, M.M., Campargue, C., Clastre, M., Borderies, G., Boudet, A. and Boudet, A.M. (1994) Purification and characterisation of cinnamoyl-coenzyme A: NADP oxidoreductase in Eucalyptus gunnii. Plant Physiol. 106, 625-632.
26. Gȯmez-Vȧsquez, R., Day, R., Buschmann, H., Randles, S., Beeching, J.R. and Cooper, R.M. (2004) Phenylpropanoids, phenylalanine ammonia lyase and peroxidases in elicitor-challenged cassava (Manihot esculenta Crantz) suspension cells and leaves. Ann. Bot. 94, 87-97.
27. Graham, J.S., Xiong, J. and Gillikin, J.W. (1991) Purification and developmental analysis of a metalloendoproteinase from the leaves of Glycine max. Plant Physiol. 97, 786-792.
28. Grant, M., Brown, I., Adams, S., Knight, M., Ainsile, A. and Mansfield, J. (2000) The RPM1 plant disease resistance gene facilitates a rapid and sustained increase in cytosolic calcium that is necessary for the oxidative burst and hypersensitive cell death. Plant J. 23, 441-450.
29. Grant, M. and Mansfield, J. (1999) Early events in host-pathogen interactions. Curr. Opin. Plant Biol. 2, 312-319.
30. Hahn, E.R., Leuschner, K., Akobundu, I.O., Okali, C. and Lal, R. (1979) Cassava improvement in Africa. Field Crops Res. 2, 193-226.
31. Hammerschmidt, R. (1999) Phytoalexins: what have we learnt after 60 years? Annu. Rev. Phytopathol. 37, 285-306.
32. Heo, W.D., Lee, S.H., Kim, M.C., Kim, J.C., Chung, W.S., Chun, H.J., Lee, K.J., Park, C.Y., Park, H.C., Choi, J.Y. and Cho, M.J. (1999) Involvement of specific calmodulin isoforms in salicyclic acid-independent activation of plant disease resistance responses. Proc. Natl Acad. Sci. USA, 96, 766-771.
33. van der Hoon, R.A.L. and Jones, J.D.G. (2004) The plant proteolytic machinery and its role in defence. Curr. Opin. Plant Biol. 7, 400-407.
34. Huang, J., Bachem., C., Jacobsen, E. and Visser, R.G.F. (2001) Molecular analysis of differentially expressed genes during postharvest deterioration in cassava (Manihot esculenta Crantz) tuberous roots. Euphytica, 120, 85-93.
35. Hurkman, W.J. and Tanaka, C.K. (1996) Germin gene expression is induced in wheat leaves by powdery mildew infection. Plant Physiol. 111, 735-739.
36. Jorge, V., Fregene, M.A., Duque, M.C., Bonierbale, M.W., Tohme, J. and Verdier, V. (2000) Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz). Theor. Appl. Genet. 101, 865-872.
37. Jorge, V., Fregene, M., Vėlez, C.M., Duque, M.C., Thome, J. and Verdier, V. (2001) QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassava. Theor. Appl. Genet. 102, 564-571.
38. ox and in vitro reconstitution of the entire biosynthetic pathway of the cyanogenic glycoside dhurrin from sorghum. Plant Physiol. 115, 1661-1670.
39. Kalde, M., Barth, M., Somssich, I.E. and Lippok, B. (2003) Members of the Arabidopsis WRKY Group III transcription factors are part of different plant defense signaling pathways. Mol. Plant-Microbe Interact. 16, 295-305.
40. Katagiri, F. (2004) A global view of defense gene expression regulation - a highly interconnected signaling network. Curr. Opin. Plant Biol. 7, 506-511.
41. Kawalleck, P., Schmelzer, E., Harbrock, K. and Somssich, I.E. (1995) Two pathogen-responsive genes in parsley encode a tyrosine-rich hydroxyproline-rich glycoprotein (HRGP) and an anionic peroxidase. Mol. Gen. Genet. 247, 444-452.
42. Keith, B., Dong, X., Ausubel, F.M. and Fink, G.R. (1991) Differential induction of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attack. Proc. Natl Acad. Sci. USA, 88, 8821-8825.
43. Kemp, B.P., Horne, J., Bryant, A. and Cooper, R.M. (2004) Xanthomonas axonopodis pv. manihotis gumD is essential for EPS production and pathogenicity and enhances epiphytic survival on cassava. Physiol. Mol. Plant Pathol. 64, 209-218.
44. Lam, E., Kato, N. and Lawton, M. (2001) Programmed cell death, mitochondria and the plant hypersensitive response. Nature, 411, 848-853.
45. Lauvergeat, V., Lacomme, C., Lacombe, E., Lasserre, E., Roby, D. and Grima-Pettenati, J. (2001) Two cinnamoyl-CoA reductase (CCR) genes from Arabidopsis thaliana are differentially expressed during development and in response to infection with pathogenic bacteria. Phytochemistry, 57, 1187-1195.
46. Lazzaroni, J.C., Germon, P., Ray, M.C. and Vianney, A. (1999) The Tol proteins of Esherichia coli and their involvement in the uptake of biomolecules and outer membrane stability. FEMS Micro. Lett. 177, 191-197.
47. Leach, M.J., May, K., Hallard, D., Verpoorte, R., De Luca, V. and Christou, P. (1998) Expression of two consecutive genes of a secondary metabolic pathway in transgenic tobacco: molecular diversity influences levels of expression and product accumulation. Plant Mol. Biol. 38, 765-774.
48. Lefebvre, O., Wolf, C., Limacher, J.M., Pascal, H., Wendung, C., LeMeur, M., Basset, P. and Rio, M.C. (1992) The breast cancer associated stromelysin-3 gene is expressed during mouse mammary gland apoptosis. J. Cell. Biol. 119, 997-1002.
49. Li, J., Brader, G. and Palva, E.T. (2004) The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell, 16, 319-331.
50. Linthorst, H.J.M. (1991) Pathogenesis-related proteins of plants. Crit. Rev. Plant Sci. 10, 123-150.
51. Liu, Y., Dammann, C. and Bhattacharyya, M.K. (2001) The matrix metalloproteinase gene GmMMP2 is activated in response to pathogenic infections in soybean. Plant Physiol. 127, 1778-1797.
52. Maleck, K., Levine, A., Eulgem, T., Morgan, A., Schmid, J., Lawton, K.A., Dangl, J.L. and Dietrich, R.A. (2000) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature Gen., 26, 403-410.
53. Maraite, H. and Meyer, J.A. (1975) Xanthomonas manihotis (Arthaud-Berthet) Starr, causal agent of bacterial wilt, blight and leaf spots of cassava in Zaire. PANS. 21, 27-37.
54. McGeehan, G., Burkhart, W., Anderegg, R., Becherrer, J.D., Gilikin, J.W. and Graham, J.S. (1992) Sequencing and characterization of the soybean leaf metalloproteinase. Plant Physiol. 99, 1179-1183.
55. Mitsui, S., Wakasugi, T., Hanano, S. and Sugiura, M. (1997) Localization of a cytokinin-binding protein CBP57/S-adenosyl-L-homocysteine hydrolase in a tobacco root. J. Plant Physiol. 150, 752-754.
56. Mittler, R., Vanderauwerab, S., Gollerya, M. and Van Breusegem, F. (2004) Reactive oxygen gene network of plants. Trends Plant Sci. 9, 490-498.
57. Mysore, K.S., D'Ascenzo, M.D., He, X. and Martin, G.B. (2003) Overexpression of the disease resistance gene Pto in tomato induces gene expression changes similar to immune responses in human and fruitfly. Plant Physiol. 132, 1901-1912.
58. Passardi, F., Penel, C. and Dunan, C. (2004) Performing the paradoxical: how plant peroxidases modify the cell wall. Trends Plant Sci. 9, 534-540.
59. Pereira, L.F., Goodwin, P.M. and Erickson, L. (1999) The role of a phenylalanine ammonia lyase gene during cassava bacterial blight and cassava bacterial necrosis. J. Plant Res. 112, 51-60.
60. Rasmussen, J.B., Smith, J.A., Williams, S., Burkhart, W., Ward, E., Somerville, S.C., Ryals, J. and Hammerschmidt, R. (1995) cDNA cloning and systemic expression of acidic peroxidases associated with systemic acquired resistance to disease in cucumber. Physiol. Mol. Plant Pathol. 46, 389-400.
61. Reddy, A.S.N. (2001) Calcium: silver bullet in signalling. Plant Sci. 160, 381-404.
62. Restrepo, S., Duque, M.C. and Verdier, V. (2000) Characterisation of pathotypes among isolates of Xanthomonas axonopodis pv. manihotis in Colombia. Plant Pathol. 49, 680-687.
63. Rushton, P.J., Macdonald, H., Huttly, A.K., Lazarus, C.M. and Hooley, R. (1995) Members of a new family of transcription factors bind to a conserved cis-element in the promoters of a-Amy2 genes. Plant Mol. Biol. 29, 691-702.
64. Rushton, P.J. and Sommsich, I.E. (1998) Transcriptional control of plant genes responsive to pathogens. Curr. Opin. Plant Biol. 1, 311-315.
65. Sambrook, J., Fristsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbour, NY: Cold Spring Harbour Press.
66. Smalle, J. and Vierstra, R.D. (2004) The ubiquitin 26S proteasome proteolytic pathway. Annu. Rev. Plant Biol. S5, 55-590.
67. Smith, J.A., Hammerschmidt, R. and Fulbright, D.W. (1991) Rapid induction of systemic resistance in cucumber by Pseudomonas syringae pv. syringae. Physiol. Mol. Plant Pathol. 38, 232-235.
68. Stuiver, M.H. and Custers, J.H.H.V. (2001) Engineering disease resistance in plants Nature, 411, 865-868.
69. Suárez, M.C., Bernal, A., Gutierrez, J., Tohme, J. and Fregene, M. (2000) Developing expressed sequence tags (ESTs) from polymorphic transcript derived fragments (TDFs) in cassava (Manihot esculenta Crantz). Genome, 43, 62-67.
70. Tao, Y., Xie, Z., Chen, W., Glazebrook, J., Chang, H.S., Han, B., Zhu, T., Zou, G. and Katagiri, F. (2003) Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell, 15, 317-330.
71. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
72. Turner, P., Barber, C. and Daniels, M. (1984) Behaviour of the transposons tn5 and tn7 in Xanthomonas campestris pv. campestris. Mol Gen. Genet. 195, 101-107.
73. Verdier, V., Restrepo, S., Boher, B., Nicole, M., Geiger, J.P., Alvarez, E. and Bonierbale, M. (1997) Cassava bacterial blight: recent achievements in understanding the disease. African J. Root Tuber Crops, 2, 64-68.
74. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Vandelee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. and Zabeau, M. (1995) AFLP a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
75. Werb, Z. (1997) ECM and cell surface proteolysis: regulating cellular ecology. Cell, 91, 439-442.
76. Whetten, R. and Sederoff, R. (1995) Lignin biosynthesis. Plant Cell. 7, 1001-1013.
77. Whitbred, J.M. and Schuler, M.A. (2000) Molecular characterization of CYP73A9 and CYP82A1, P450 genes involved in plant defense in pea. Plant Physiol. 124, 47-58.
78. Wilson, C.L., Ouellette, A.J., Satchell, D.P., Ayabe, T., Lopez-Boado, Y.S., Stratman, J.L., Hultgren, S.J., Matrisian, L.M. and Parks, W.C. (1999) Regulation of intestinal α-defensin activation by the metalloproteinase matrilysion in innate host defense. Science, 286, 113-117.
79. Wydra, K., Zinsou, V., Jorge, V. and Verdier, V. (2004) Identification of pathotypes of Xanthomonas axonopodis pv. manihotis in Africa and detection of quantitative trait loci and markers for resistance to bacterial blight of cassava. Phytopathology, 94, 1084-1093.
80. 2-producing protein, accumulates in barley attacked by the powdery mildew fungus. Plant J. 8, 139-145.
81. Zhou, N., Tootle, T.L. and Glazebrook, J. (1999) Arabidopsis PAD3, a gene required for camalexin biosynthesis, encodes a putative cytochrome P450 monooxygenase. Plant Cell. 11, 2419-2428.
82. Zinsou, V., Wydra, K., Ahohuendo, B. and Hau, B. (2004) Effect of soil amendments, intercropping and planting time in combination on the severity of cassava bacterial blight and yield in two ecozones of West Africa. Plant Pathol. 53, 585-595.