Structure and Properties of DNA-Based Reversible Polymers

Macromolecules

Volumn 37, Issue 5, 2004, Pages 1863-1870

  Xu, Jun ^a   Fogleman, Elizabeth A ^a   Craig, Stephen L ^a  

^a DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COVALENT POLYMERS; POLYMERIC ASSEMBLIES;

BIOSYNTHESIS; CONFORMATIONS; HYDROGEN BONDS; LIGHT SCATTERING; MOLECULAR STRUCTURE; MOLECULAR WEIGHT; MONOMERS; REACTION KINETICS; SIZE EXCLUSION CHROMATOGRAPHY;

DNA;

EID: 1642588223     PISSN: 00249297     EISSN: None     Source Type: Journal    
DOI: 10.1021/ma035546v     Document Type: Article

References (87)

1. Brunsveld, L.; Folmer, B. J. B.; Meijer, E. W.; Sijbesma, R. P. Chem. Rev. 2001, 101, 4071-4097.
2. Sijbesma, R. P.; Meijer, E. W. Chem. Commun. 2003, 5-16.
3. Schmuck, C.; Wienand, W. Angew. Chem., Int. Ed. 2001, 40, 4363-4369.
4. ten Gate, A. T.; Sijbesma, R. P. Macromol. Rapid Commun. 2002, 23, 1094-1112.
5. Corbin, P. S.; Zimmerman, S. C. In Supramolecular Polymers; Ciferri, A., Ed.; Marcel Dekker: New York, 2000; Vol. 1, pp 147-176.
6. van der Gucht, J.; Bessling, N. A. M.; Stuart, M. A. C. J. Am. Chem. Soc. 2002, 124, 6202-6205.
7. Lehn, J.-M. Macromol. Chem. Macromol. Symp. 1993, 69, 1.
8. Sijbesma, R. P.; Beijer, F. H.; Brunsveld, L.; Folmer, B. J. B.; Hirschberg, J. H. K. K.; Lange, R. F. M.; Lowe, J. K. L.; Meijer, E. W. Science (Washington, D.C.) 1997, 278, 1601-1604.
9. Castellano, R. K.; Rudkevich, D. M.; Rebek, J., Jr. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 7132-7137.
10. Zimmerman, N.; Moore, J. S.; Zimmerman, S. C. Chem. Ind. 1998, 604-610.
11. Alexander, C.; Jariwala, C. P.; Lee, C. M.; Griffin, A. C. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 1993, 34, 168-169.
12. Michelsen, U.; Hunter, C. A. Angew. Chem., Int. Ed. 2000, 39, 764-767.
13. Whitesides, G. M.; Mathias, J. P.; Seto, C. T. Science 1991, 254, 1312-1319.
14. Castellano, R. K.; Nuckolls, C.; Eichhorn, S. H.; Wood, M. R.; Lovinger, A. J.; Rebek, J., Jr. Angew. Chem., Int. Ed. 1999, 38, 2603-2606.
15. Hirschberg, J. H. K. K.; Ramzi, A.; Sijbesma, R. P.; Meijer, E. W. Macromolecules 2003, 36, 1429-1432.
16. Keizer, H. M.; Sijbesma, R. P.; Jansen, J. F. G. A.; Pasternack, G.; Meijer, E. W. Macromolecules 2003, 36, 5602-5606.
17. Canty, A. J.; Patel, J.; Skelton, B. W.; While, A. H. J. Organomet. Chem. 2000, 599, 195-199.
18. Castellano, R. K.; Clark, R.; Craig, S. L.; Nuckolls, C.; Rebek, J., Jr. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 12418-12421.
19. Hilger, C.; Stadler, R. Makromol. Chem. 1991, 192, 805-817.
20. Dankers, P. Y. W.; van Beek, D. J. M.; ten Cate, A. T.; Sijbesma, R. P.; Meijer, E. W. Polym. Mater. Sci. Eng. 2003, 88, 52-53.
21. ten Cate, A. T.; van Beek, D. J. M.; Spiering, A. J. H.; Dankers, P. Y. W.; Sijbesma, R. P.; Meijer, E. W. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2003, 44, 618-619.
22. Sijbesma, R. P.; Folmer, B. J. B.; Meijer, E. W. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2002, 43, 375-376.
23. Bosman, A. W.; Folmer, B. J. B.; Hirschberg, J. H. K. K.; Keizer, H. M.; Sijbesma, R. P.; Meijer, E. W. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2002, 43, 322.
24. Knapp, R.; Schott, A.; Rehahn, M. Macromolecules 1996, 29, 478-480.
25. Meier, M. A. R.; Schubert, U. S. Polym. Mater. Sci. Eng. 2003, 88, 443-444.
26. Hofmeier, H.; Gohy, J.-F.; Schubert, U. S. Polym. Mater. Sci. Eng. 2003, 88, 193-194.
27. Hofmeier, H.; El-Ghayoury, A.; Schubert, U. S. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2003, 44, 711-712.
28. Hofmeier, H.; Schmatloch, S.; Schubert, U. S. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2003, 44, 709-710.
29. Schmatloch, S.; Gonzalez, M. F.; Schubert, U. S. Macromol. Rapid Commun. 2002, 23, 957-961.
30. Gohy, J.-F.; Lohmeijer, B. G. G.; Varshney, S. K.; Decamps, B.; Leroy, E.; Boileau, S.; Schubert, U. S. Macromolecules 2002, 35, 9748-9755.
31. Lohmeijer, B. G. G.; Schubert, U. S. Angew. Chem., Int. Ed. 2002, 41, 3825-3829.
32. Schubert, U. S.; Schmatloch, S.; Precup, A. A. Des. Monomers Polym. 2002, 5, 211-221.
33. Schubert, U. S.; Eschbaumer, C. Angew. Chem., Int. Ed. 2002, 41, 2892-2926.
34. Gohy, J.-F.; Lohmeijer, B. G. G.; Varshney, S. K.; Schubert, U. S. Macromolecules 2002, 35, 7427-7435.
35. Rowan, S. J.; Beck, J. B.; Ineman, J. M. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2003, 44, 691-692.
36. Rowan, S. J.; Suwanmala, P.; Sivakova, S. J. Polym. Sci., Part A: Polym. Chem. 2003, 41, 3589-3596.
37. Harada, A.; Kawaguchi, Y.; Hoshino, T. J. Inclusion Phenom. 2001, 41, 115-121.
38. Berl, V.; Schmutz, M.; Krische, M. J.; Khoury, R. G.; Lehn, J.-M. Chem.-Eur. J. 2002, 8, 1227-1244.
39. Harada, A. Kagaku Kyoiku 2002, 50, 86-88.
40. Fromm, K. M. Chem.-Eur. J. 2001, 7, 2236-2244.
41. Boileau, S.; Bouteiller, L.; Laupretre, F.; Lortie, F. New J. Chem. 2000, 24, 845-848.
42. Harada, A. Kagaku Kogyo (Osaka) 2000, 74, 470-476.
43. Moore, J. S. Curr. Opin. Colloid Interface Sci. 1999, 4, 108-116.
44. Hirschberg, J. H. K. K.; Beijer, F. H.; van Aert, H. A.; Magusin, P. C. M. M.; Sijbesma, R. P.; Meijer, E. W. Macromolecules 1999, 32, 2696-2705.
45. Gibson, H. W.; Yamaguchi, N.; Jones, J. W. J. Am. Chem. Soc. 2003, 125, 3522-3533.
46. Cooke, G.; Rotello, V. M. Chem. Soc. Rev. 2002, 31, 275-286.
47. Stubbs, L. P.; Weck, M. Chem.-Eur. J. 2003, 9, 992-999.
48. Kilian, L.; Yamauchi, K.; Sinani, V. A.; Hudelson, C. L.; Long, T. E. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2002, 43, 916-917.
49. Elkins, C. L.; Yamauchi, K.; Long, T. E. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2003, 44, 576-577.
50. Folmer, B. J. B.; Sijbesma, R. P.; Meijer, E. W. Polym. Mater. Sci. Eng. 1999, 80, 20-21.
51. Brunsveld, L.; Folmer, B. J. B.; Meijer, E. W. MRS Bull. 2000, 25, 49-53.
52. Fogleman, E. A.; Yount, W. C.; Xu, J.; Craig, S. L. Angew. Chem., Int. Ed. 2002, 41, 4026-4028.
53. Seeman, N. C. Angew. Chem., Int. Ed. 1998, 37, 3220-3238.
54. Guckian, K. M.; Schweitzer, B. A.; Ren, R. X.-F.; Sheils, C. J.; Tahmassebi, D. C.; Kool, E. T. J. Am. Chem. Soc. 2000, 122, 2213-2222.
55. Bommarito, S.; Peyret, N.; SantaLucia, J., Jr. Nucleic Acids Res. 2000, 28, 1929-1934.
56. (a) Breslauer, K. J.; Frank, R.; Blocker, H.; Marky, L. A. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 3746.
57. (b) Plum, G. E.; Breslauer, K. J.; Roberts, R. W. Compr. Nat. Prod. Chem. 1999, 7, 15-53.
58. Nicolai, T.; Mandel, M. Macromolecules 1989, 22, 438-444.
59. For other examples of light scattering in the study of reversible polymerization, see; (a) Lomakin, A.; Benedek, G. B.; Castellano, R. K.; Nuckolls, C.; Rebek, J., Jr. Trends Opt. Photonics 2002, 47, 27-29. (b) van der Gucht, J.; Besseling, N. A. M.; Knoben, W.; Bouteiller, L.; Cohen Stuart, M. A. Phys. Rev. E 2003, 67, 051106/1-051106/10.
60. For other examples of light scattering in the study of reversible polymerization, see; (a) Lomakin, A.; Benedek, G. B.; Castellano, R. K.; Nuckolls, C.; Rebek, J., Jr. Trends Opt. Photonics 2002, 47, 27-29. (b) van der Gucht, J.; Besseling, N. A. M.; Knoben, W.; Bouteiller, L.; Cohen Stuart, M. A. Phys. Rev. E 2003, 67, 051106/1-051106/10.
61. Xu, J.; Craig, S. L., unpublished results.
62. Wissenburg, P.; Odijk, T.; Cirkel, P.; Mandel, M. Macromolecules 1995, 28, 2315-2328.
63. Stigter, D.; Dill, K. A. J. Phys. Chem. 1993, 97, 12995-12997.
64. Folmer, B. J. B.; Cavini, E.; Sijbesma, R. P.; Meijer, E. W. Chem. Commun. 1998, 1847-1848.
65. Wu, A.; Isaacs, L. J. Am. Chem. Soc. 2003, 125, 4831-4835.
66. Ciferri, A. Macromol. Rapid Commun. 2002, 23, 511-529.
67. We earlier reported an average slope of 3.3 for OM 2 (see Angew. Chem., Int. Ed. 2002, 41, 4026-4028). Further measurements and closer inspection reveal the transition from dilute to semidilute regimes.
68. Pan, C.; Maurer, W.; Liu, Z.; Lodge, T. P. Macromolecules 1995, 28, 1643-1653.
69. Cates, M. E. Macromolecules 1987, 20, 2289.
70. -7, the percentage of cyclic components therefore can be estimated roughly as 10%.
71. Hirao, I.; Nishimura, Y.; Tagawa, Y.; Watanabe, K.; Miura, K. Nucleic Acids Res. 1992, 20, 3891-3896.
72. Yoshizawa, S.; Kawai, G.; Nishimura, Y.; Kakinuma, T.; Matsumoto, N.; Ishido, Y.; Miura, K.; Watanabe, K.; Hirao, I. Nucleic Acids Symp. Ser. 1994, 31, 293-294.
73. Yoshizawa, S.; Ueda, T.; Ishido, Y.; Miura, K.; Watanabe, K.; Hirao, I. Nucleic Acids Res. 1994, 22, 2217-2221.
74. Yoshizawa, S.; Kawai, G.; Watanabe, K.; Miura, K.; Hirao, I. Biochemistry 1997, 36, 4761-4767.
75. Mills, J. B.; Cooper, J. P.; Hagerman, P. J. Biochemistry 1994, 33, 1797-1803
76. Varadaiah, V. V.; Rao, V. S. R. J. Polym. Sci. 1959, 36, 558-559.
77. Burchard, W.; Schmidt, M.; Stockmayer, W. H. Macromolecules 1980, 13, 1265-1272.
78. Schmidt, M. Macromolecules 1984, 17, 553-560.
79. Jacobson, H.; Stockmayer, W. H. J. Chem. Phys. 1950, 18, 1600-1606.
80. Shimada, J.; Yamakawa, H. Macromolecules 1984, 17, 689-698.
81. Shore, D.; Baldwin, R. J. Mol. Biol. 1983, 170, 957-981.
82. Crothers, D.; Drak, J.; Kahn, J.; Levene, S. Methods Enzymol. 1992, 212, 3-29.
83. Shore, D.; Langowski, J.; Baldwin, R. Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 4833-4837.
84. Yamakawa, H.; Stockmayer, W. H. J. Chem. Phys. 1972, 57, 2843.
85. Dlakic, M.; Harrington, R. J. Biol. Chem. 1995, 270, 29945-29952.
86. Zhang, Y.; Crothers, D. M. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 3161-3166.
87. The value obtained by light scattering reflects the weight-average MW and corresponds to a polymer with ∼120 bp. If the polydispersity index is close to the theoretical value of 2 expected for linear RP's, then the number average of base pairs per chain is ∼60 bp.