Rice proteome analysis: A step toward functional analysis of the rice genome

Proteomics

Volumn 5, Issue 4, 2005, Pages 938-949

  Komatsu, Setsuko ^a   Tanaka, Naoki ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Functional genomics; Proteome database; Review; Rice; Two dimensional gel electrophoresis

Indexed keywords

CELL ORGANELLE; CONFERENCE PAPER; GENOME; MOLECULAR CLONING; NONHUMAN; PLANT CELL; PLANT GENETICS; PLANT GROWTH; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN ISOLATION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; RICE; STRESS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

CALRETICULIN; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENOME, PLANT; GENOMICS; ORYZA SATIVA; PROTEOMICS;

EID: 16344375435     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200401040     Document Type: Conference Paper

References (64)

1. Devos, M. K., Gale, D. M., Plant Cell 2000, 12, 637-646.
2. Yu, J., Hu, S., Wang, J., Wong, G. K.-S., et al., Science 2002, 296, 79-92.
3. Goff, S. A., Ricke, D., Lan, T.-H., Presting, G. et al., Science 2002, 296, 92-100.
4. Sasaki, T., Matsumoto, T., Yamamoto, K., Sakata, K. et al., Nature 2002, 420, 312-316.
5. Feng, Q., Zhang, Y., Hao, P., Wang, S. et al., Nature 2002, 420, 316-320.
6. Lockhart, J. D., Winzeler, A. E., Nature 2000, 405, 827-835.
7. Pandey, A., Mann, M., Nature 2000, 405, 837-845.
8. Komatsu, S., Kajiwara, H., Hirano, H., Theor. Appl. Genet. 1993, 86, 935-942.
9. Zhong, B., Karibe, H., Komatsu, S., Ichimura, H. et al., Breed. Sci. 1997, 47, 255-251.
10. Komatsu, S., Muhammad, A., Rakwal, R., Electrophoresis 1999, 20, 630-636.
11. Komatsu, S., Rakwal, R., Li., Z., Plant Cell Tissue Organ Cult. 1999, 55, 183-192.
12. Tsugita, A., Kawakami, T., Uchiyama, Y., Kamo, M. et al., Electrophoresis 1994, 15, 708-720.
13. Shen, S., Matsubae, M., Takao, T., Tanaka, N., Komatsu, S., J. Biochem. 2002, 132, 613-620.
14. Imin, N., Kerim, T., Weinman, J. J., Rolfe, B. G., Proteomics 2001, 1, 149-1161.
15. Koller, A., Washburn, M. P., Lange, B. M., Andon, N. L. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 11969-11974.
16. Tanaka, N., Konishi, H., Khan, M., Komatsu, S., Mol. Genet. Genomics 2004, 270, 485-496.
17. Mikami, S., Hori, H., Mitsui, T., Plant Sci. 2001, 161, 665-675.
18. Heazlewood, J. L., Howell, K. A., Whelan, J., Millar, A. H., Plant Physiol. 2003, 132, 230-242.
19. Tanaka, N., Fujita, M., Handa, H., Murayama, S. et al., Mol. Genet. Genomics 2004, 271, 566-576.
20. Komatsu, S., Kojima, K., Suzuki, K., Ozaki, K., Higo, K., Nucleic Acids Res. 2004, 32, 388-392.
21. VanBohelen, R. A., Abshire, K. Z., Moldover, B., Olson, E. R., Neidhardt, F. C., Electrophoresis 1997, 18, 1243-1251.
22. Dunn, M. J., Corbett, J. M., Wheeler, C. H., Electrophoresis 1997, 18, 2795-2802.
23. Payne, W. E., Garrels, J. I., Nucleic Acids Res. 1997, 25, 57-62.
24. Bini, L., Magi, B., Marzocchi, B., Arcuri, F. et al., Electrophoresis 1997, 18, 2832-2841.
25. Shaw, A. C., Larsen, M. R., Roepstorff, P., Holm, A. et al., Electrophoresis 1999, 20, 977-983.
26. Hoogland, C., Sanchez, J.-C., Tonella, L., Binz, R.-A. et al., Nucleic Acids Res. 2000, 28, 286-288.
27. Komatsu, S., Konishi, H., Shen, S., Yang, G., Mol. Cell. Proteomics 2003, 2, 2-10.
28. Hirano, H., Kawasaki, H., Sassa, H., Electrophoresis 2000, 21, 440-445.
29. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
30. Cleveland, D. W., Fisher, S. G., Kirschner, M. W., Laemmli, U. K., J. Biol. Chem. 1997, 252, 1102-1106.
31. Khan, M., Komatsu, S., Phytochemistry 2004, 65, 1671-1681.
32. Bevan, M., Bancroft, I., Bent, E., Love, K. et al., Nature 1998, 391, 485-488.
33. Xu, Y., Buchholz, W. G., DeRose, R. T., Hall, T. C., Plant Mol. Biol. 1995, 27, 237-248.
34. Santoni, V., Rouquie, D., Doumas, P., Mansion, M. et al., Plant J. 1998, 16, 633-641.
35. Hedrich, R., Schroeder, J. I., Annu. Rev. Plant Physiol. 1989, 40, 539-569.
36. Maurel, C., Annu. Rev. Plant Physiol. Plant Mol. Biol. 1997, 48, 399-429.
37. Sze, H., Liang, F., Hwang, I., Annu. Rev. Plant Physiol. Plant Mol. Biol. 2000, 51, 433-462.
38. Staehelin, L. A., Moore, I., Annu. Rev. Plant Physiol. Plant Mol. Biol. 1995, 46, 261-288.
39. Dhugga, K. S., Tiwari, S. C., Ray, P. M., Proc. Natl. Acad. Sci. USA 1997, 94, 7679-7684.
40. Kruft, V., Eubel, H., Jänsch, L., Whehahn, W., Braun, H.-P., Plant Physiol. 2001, 127, 1694-1710.
41. Millar, A. H., Sweetlove, L. J., Giege, P., Leaver, C. J., Plant Physiol. 2001, 127, 1711-1727.
42. Peltier, J.-B., Emanuelsson, O., Kalume, D. E., Ytterberg, J. et al., Plant Cell 2002, 14, 211-236.
43. Peltier, J.-B., Friso, G., Kalume, D. E., Roepstorff, P. et al., Plant Cell 2000, 12, 319-341.
44. Schubert, M., Petersson, U. A., Haas, P. J., Funk, C. et al., J. Biol. Chem. 2002, 277, 8354-8365.
45. Davies, P. J. (Ed.), Plant hormones: Physiology, Biochemistry, and Molecular Biology, Kluwer, Dordrecht, Netherlands, 1995.
46. Sasse, J. M., Physiol. Plant. 1997, 100, 696-701.
47. Konishi, H., Komatsu, S., Biol. Pharm. Bull. 2003, 26, 401-408.
48. Rakwal, R., Komatsu, S., Electrophoresis 2000, 21, 2492-2500.
49. Casimaro, I., Marchant, A., Bhalerao, R. P., Beeckman, T. et al., Plant Cell 2001, 13, 843-852.
50. Oguchi, K., Tanaka, N., Komatsu, S., Akao, S., Plant Cell Rep. 2004, 22, 848-858.
51. Oguchi, K., Tanaka, N., Komatsu, S., Akao, S., Physiol. Plant. 2004, 121, 124-131.
52. Garbalino, J. E., Hurkman, W. J., Tanaka, C. K., Dupont, F. N., Plant Physiol. 1991, 95, 1219-1228.
53. Komatsu, S., Karibe, H., Hamada, T., Rakwal, R., Theor. Appl. Genet. 1999, 98, 1304-1310.
54. Chameides, W. L., Kasibhatla, P. S., Yienger, J., Levy, H. II., Science 1994, 264, 74-77.
55. Agrawal, G. K., Rakwal, R., Yonekura, M., Kubo, A., Saji, H., Proteomics 2002, 2, 974-959.
56. Salekdeh, Gh. H., Siopongco, J., Ghareyazie, B., Bennett, J., Proteomics 2002, 2, 1131-1145.
57. Abbasi, F., Komatsu, S., Proteomics 2004, 4, 2072-2081.
58. Kim, S. T., Cho, K. S., Yu, S., Kim, S. G. et al., Proteomics 2003, 3, 2368-2378.
59. Konishi, H., Ishiguro, K., Komatsu, S., Proteomics 2001, 7, 1162-1171.
60. Ventelon-Debout, M., Delalande, F., Brizard, J.-P., Diemer, H. et al., Proteomics 2004, 4, 216-225.
61. Komatsu, S., Masuda, T., Abe, K., Plant Cell Physiol. 1996, 37, 748-753.
62. Li, Z., Komatsu, S., Eur. J. Biochem. 2000, 267, 737-745.
63. Sheri, S., Sharma, A., Komatsu, S., Biol. Pharm. Bull. 2003, 26, 129-136.
64. Sharma, A., Isogai, M., Yamamoto, T., Sakaguchi, K. et al., Plant Cell Physiol. 2004, 45, 684-692.