A proteomic analysis of leaf sheaths from rice

Journal of Biochemistry

Volumn 132, Issue 4, 2002, Pages 613-620

  Shen, Shihua ^a   Matsubae, Masami ^b   Takao, Toshifumi ^b   Tanaka, Naoki ^a   Komatsu, Setsuko ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

2 D PAGE; Leaf sheath; Mass spectrometry; Protein sequencer; Rice

Indexed keywords

PROTEOME; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR GENETICS; PLANT LEAF; POLYACRYLAMIDE GEL ELECTROPHORESIS; RICE; SEQUENCE ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS; AMINO TERMINAL SEQUENCE; PROTEIN FUNCTION; PROTEOMICS;

AMINO ACID SEQUENCE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT LEAVES; PLANT PROTEINS; PROTEOME; SEQUENCE ANALYSIS, PROTEIN; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0036773786     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a003264     Document Type: Article

References (32)

1. Sasaki, T. (1998) The rice genome project in Japan. Proc. Natl. Acad. Sci. USA 95, 2027-2028
2. Li, J. and Assmann, S.M. (2000) Mass spectrometry. An essential tool in proteome analysis. Plant Physiol. 123, 807-809
3. Koc, E.C., Burkhart, W., Blackburn, K., Moseley, A., Koc, H., and Spremulli, L.L. (2000) A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins. J. Biol. Chem. 275, 32585-32591
4. Komatsu, S., Kajiwara, H., and Hirano, H. (1993) A rice protein library: A data-file of rice proteins separated by two-dimensional electrophoresis. Theor. Appl. Genet. 86, 953-942
5. Kamo, M., Kawakami, T., Miyatake, N., and Tsugita, A. (1995) Separation and characterization of Arabidopsis thaliana protein by two-dimensional gel electrophoresis. Electrophoresis 16, 423-430
6. Chang, W.W., Huang, L., Shen, M., Webster, C., Burlingame, A.L., and Roberts, J.K. (2000) Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry. Plant Physiol. 122, 295-318
7. Peltier, J.B., Frison, G., Kalume, D.E., Roepstorff, P., Nilsson, F., Adamska, I., and van Wijk, K.J. (2000) Proteomics of the chloroplast: Systematic identification and targeting analysis of luminal and peripheral thylakoid proteins. Plant Cell 12, 319-342
8. Rossignol, M. (2001) Analysis of the plant proteome. Curr. Opin. Biotechnol. 12, 131-134
9. Zhong, B., Karibe, H., Komatsu, S., Ichimura, H., Nagamura, Y., Sasaki, T., and Hirano, H. (1997) Screening of rice genes from a cDNA catalog based on the sequence data-file of proteins separated by two-dimensional electrophoresis. Breed. Sci. 47, 245-251
10. Komatsu, S., Muhammad, A., and Rakwal, R. (1999) Separation and characterization of proteins from green and etiolated shoots of rice: Towards a rice proteome. Electrophoresis 20, 630-636
11. Komatsu, S., Rakwal, R., and Li, Z. (1999) Separation and characterization of proteins in rice suspension cultured cells. Plant Cell Tissue Organ Culture 55, 183-192
12. Tsugita, A., Kawakami, T., Uchiyama, Y., Kamo, M., Miyatake, N., and Nozu, Y. (1994) Separation and characterization of rice proteins. Electrophoresis 15, 708-720
13. Rakwal, R. and Komatsu, S. (2000) Role of jasmonate in the rice self-defense mechanism using proteome analysis. Electrophoresis 21, 2492-2500
14. O'Farrell, P.H. (1975) High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250, 4007-4021
15. Cleveland, D.W., Fischer, S.G., Kirschner, M.W., and Laemmli, U.K. (1977) Peptide mapping by limited proteolysis in sodium dodecyl sulfate and analysis by gel. J. Biol. Chem. 252, 11102-1106
16. Pearson, W.R. and Lipman, D.J. (1998) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448
17. Jensen, O.N., Wilm, M., Shevchenko, A., and Mann, M. (1999) 2-D Proteome Analysis Protocols, pp. 513-530, Humana Press, Totowa, NJ
18. Natera, S.H., Guerreiro, N., and Djordjevic, M.A. (2000) Proteome analysis of differentially displayed proteins as a tool for the investigation of symbiosis. Mol. Plant Microbe Interact. 13, 995-1009
19. Tsugita, A., Kamo, M., Kawakami, T., and Ohki, Y. (1996) Two-dimensional electrophoresis of plant proteins and standardization of gel patterns. Electrophoresis 17, 855-865
20. Takahashi, N., Takahashi, Y., and Putnam, F.W. (1985) Complete amino acid sequence of human hemopexin, the hemebinding protein of serum. Proc. Natl. Acad. Sci. USA 82, 73-77
21. Wellner, D., Paneerselvam, C., and Horecker, B.L. (1990) Sequencing of peptides and proteins with blocked N-terminal amino acids: N-acetylserine or N-acetylthreonine. Proc. Natl. Acad. Sci. USA 87, 1947-1949
22. Shevchenko, A., Jensen, O.N., Podtelejnikov, A.V., Sagliocco, F., Wilm, M., Vorm, O., Mortensen, P., Shevchenko, A., Boucherie, H., and Mann, M. (1996) Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels. Proc. Natl. Acad. Sci. USA 93, 14440-14445
23. Boja, E.S. and Fales, H.M. (2001) Overalkylation of a protein digest with iodoacetamide. Anal. Chem. 73, 3576-3582
24. Li, Z. and Komatsu, S. (2000) Molecular cloning and characterization of calreticulin, a calcium-binding protein involved in the regeneration of rice cultured suspension cells. Eur. J. Biochem. 267, 737-745
25. Sakamoto, A., Okumura, T., Kaminaka, H., and Tanaka, K. (1995) Molecular cloning of the gene (SodCc1) that encodes a cytosolic copper/zinc-superoxide dismutase from rice. Plant Physiol. 107, 651-652
26. Kaminaka, H., Morita, S., Yokoi, H., Masumura, T., and Tanaka, K. (1997) Molecular cloning and characterization of a cDNA for plastidic copper/zinc-superoxide dismutase in rice. Plant Cell Physiol. 38, 65-69
27. Matsuoka, M., Kano-Murakami, Y., Tanaka, Y., Ozeki, Y., and Yamamoto, N. (1988) Classification and nucleotide sequence of cDNA encoding the small subunit of ribulose-1.5-bisphosphate carboxylase from rice. Plant Cell Physiol. 29, 1015-1022
28. Sakamoto, A., Ohsuga, H., and Tanaka, K. (1992) Nucleotide sequences of two cDNA clones encoding different Cu/Zn-superoxide dismutases expressed in developing rice seed. Plant Mol. Biol. 19, 323-327
29. Claes, B., Dekeyser, R., Villarroel, R., Van den Bulcke, M., Bauw, G., Van Montagu, M., and Caplan, A. (1990) Characterization of rice gene showing organ-specific expression in response to salt stress and drought. Plant Cell 2, 19-27
30. 2+-dependent protein kinase component downstream to the gibberellin-binding phosphoprotein, RuBisCO activase, in rice. Biochem. Biophys. Res. Commun. 290, 690-695
31. Ikeda, A., Ueguchi-Tanaka, M., Sonoda, Y., Kitano, H., Koshioka, M., Futsuhara, Y., Matsuoka, M., and Yamaguchi, J. (2001) Slender rice, a constitutive response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8. Plant Cell 13, 999-1010
32. Itoh, H., Ueguchi-Tanaka, M., Sato, Y., Ashikari, M., and Matsuoka, M. (2002) The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei. Plant Cell 14, 57-70