Structure-based mechanism of O2 sensing and ligand discrimination by the FixL heme domain of Bradyrhizobium japonicum

Biochemistry

Volumn 41, Issue 43, 2002, Pages 12952-12958

  Hao, Bing ^a   Isaza, Clara ^a   Arndt, Joseph ^a   Soltis, Michael ^b   Chan, Michael K ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

LIGAND-BOUND STRUCTURES;

CYANIDES; HYDROGEN BONDS; OXIDATION; OXYGEN; PROTEINS;

BIOCHEMISTRY;

1 METHYLIMIDAZOLE; HEME DERIVATIVE; OXYGEN; PROTEIN FIXL; UNCLASSIFIED DRUG; WATER;

ARTICLE; BRADYRHIZOBIUM JAPONICUM; CORRELATION ANALYSIS; HYDROGEN BOND; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DOMAIN; STEREOCHEMISTRY; STRUCTURE ANALYSIS;

ARGININE; BACTERIAL PROTEINS; BRADYRHIZOBIUM; CARBON MONOXIDE; CRYSTALLOGRAPHY, X-RAY; CYANIDES; FERRIC COMPOUNDS; FERROUS COMPOUNDS; HEME; HEMEPROTEINS; HYDROGEN BONDING; IMIDAZOLES; ISOMERISM; LIGANDS; OXIDATION-REDUCTION; OXYGEN; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; STRUCTURE-ACTIVITY RELATIONSHIP;

BRADYRHIZOBIUM; BRADYRHIZOBIUM JAPONICUM; NEGIBACTERIA; RHIZOBIUM;

EID: 0037195260     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi020144l     Document Type: Article

References (35)

1. Rodgers, K. R., Lukat-Rodgers, G. S., and Tang, L. (1999) J. Am. Chem. Soc. 121, 11241-11242.
2. Chan, M. K. (2000) J. Porphyrins Phthalocyanines 4, 358-361.
3. Chan, M. K. (2001) Curr. Opin. Chem. Biol. 5, 216-222.
4. Gilles-Gonzalez, M. A., Ditta, G., and Helinski, D. R. (1991) Nature 350, 170-172.
5. Gilles-Gonzalez, M. A., and Gonzalez, G. (1993) J. Biol. Chem. 268, 16293-7.
6. Agron, P. G., Ditta, G. S., and Helinski, D. R. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3506-3510.
7. Gilles-Gonzalez, M. A., Gonzalez, G., Perutz, M. F., Kiger, L., Marden, M. C., and Poyart, C. (1994) Biochemistry 33, 8067-73.
8. Taylor, B. L., and Zhulin, I. B. (1999) Microbiol. Mol. Biol. Rev. 63, 479-506.
9. Gong, W., Hao, B., Mansy, S. S., Gonzalez, G., Gilles-Gonzalez, M. A., and Chan, M. K. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 15177-15182.
10. Gong, W., Hao, B., and Chan, M. K. (2000) Biochemistry 39, 3955-3962.
11. Perutz, M. F. (1979) Annu. Rev. Biochem. 48, 327-386.
12. Perutz, M. F. (1989) Mechanisms of Cooperativity and Allosteric Regulation in Proteins, Cambridge University Press, Cambridge, U.K.
13. Gilles-Gonzalez, M. A., Gonzalez. G., and Perutz, M. F. (1995) Biochemistry 34, 232-236.
14. Perutz, M. F., Paoli, M., and Lesk, A. M. (1999) Chem. Biol. 6, R291-R297.
15. Mukai, M., Nakamura, K., Nakamura, H., Iizuka, T., and Shiro, Y. (2000) Biochemistry 39, 13810-13816.
16. Miyatake, H., Mukai, M., Adachi, S.-I., Nakamura, H., Tamura, K., Iizuka, T., Shiro, Y., Strange, R. W., and Hasnain, S. S. (1999) J. Biol. Chem. 274, 23176-23184.
17. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326.
18. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Ctystallogr. A47, 110-119.
19. Brünger, A. T. (1993) Acta Crystallogr D49, 24-26.
20. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
21. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.
22. Merritt, E., and Murphy, M. (1994) Acta Crystallogr. D50, 869-873.
23. McRee, D. E. (1993) Practical Protein Crystallography, Academic Press, Inc., San Diego.
24. Brünger, A. T., and Warren, G. T. (1998) Acta Crystallogr. D54, 905-921.
25. Zhulin, I. B., Taylor, B. L., and Dixon, R. (1997) Trends Biochem. Sci. 22, 331-333.
26. Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S.-I., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., and Shiro, Y. (2000) J. Mol. Biol. 301, 415-431.
27. Ellison, M. K., and Scheidt, W. R. (1997) J. Am. Chem. Soc. 119, 7404-7405.
28. Ellison, M. K., and Scheidt, W. R. (1999) J. Am. Chem. Soc. 121, 5210-5219.
29. Slebodnick, C., and Ibers, J. A. (1997) J. Biol. Inorg. Chem. 4, 521-525.
30. Kachalova, G. S., Popov, A. N., and Bartunik, H. D. (1999) Science 284, 473-476.
31. Olson, J. S., and Phillips, G. N. (1997) J. Biol. Inorg. Chem. 2, 544-552.
32. Conti, E., Moser, C., Rizzi, M., Mattevi, A., Lionetti, C., Coda, A., Ascenzi, P., Brunori, M., and Bolognesi, M. (1993) J. Mol. Biol. 233, 498-508.
33. Bisig, D. A., Di Iorio, E. E., Diederichs, K., Winterhalter, K. H., and Piontek, K. (1995) J. Biol. Chem. 270, 20754-20762.
34. Springer, B. A., Sligar, S. G., Olson, J. S., and Phillips, G. N. (1994) Chem. Rev. 94, 699-714.
35. Tuckerman, J. R., Gonzalez, G., Dioum, E. M., and Gilles-Gonzalez, M.-A. (2002) Biochemistry 41, 6170-6177.