-
1
-
-
0016784251
-
Two ribose-5-phosphate isomerases from Escherichia coli K12: Partial characterisation of the enzymes and consideration of their possible physiological roles
-
Essenberg M.K., Cooper R.A. Two ribose-5-phosphate isomerases from Escherichia coli K12: partial characterisation of the enzymes and consideration of their possible physiological roles. Eur. J. Biochem. 55:1975;323-332.
-
(1975)
Eur. J. Biochem.
, vol.55
, pp. 323-332
-
-
Essenberg, M.K.1
Cooper, R.A.2
-
2
-
-
0030735584
-
The D-allose operon of Escherichia coli K-12
-
Kim C., Song S., Park C. The D-allose operon of Escherichia coli K-12. J. Bacteriol. 179:1997;7631-7637.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7631-7637
-
-
Kim, C.1
Song, S.2
Park, C.3
-
3
-
-
0032748206
-
D-allose catabolism of Escherichia coli: Involvement of alsI and regulation of als regulon expression by allose and ribose
-
Poulsen T.S., Chang Y.Y., Hove-Jensen B. D-allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose. J. Bacteriol. 181:1999;7126-7130.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7126-7130
-
-
Poulsen, T.S.1
Chang, Y.Y.2
Hove-Jensen, B.3
-
4
-
-
0030060223
-
Ribose catabolism of Escherichia coli: Characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression
-
Sorensen K.I., Hove-Jensen B. Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression. J. Bacteriol. 178:1996;1003-1011.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1003-1011
-
-
Sorensen, K.I.1
Hove-Jensen, B.2
-
5
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D. III, et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature. 393:1998;537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris III, D.6
-
6
-
-
0041384346
-
The 2.2Å resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction
-
Zhang R.-., Andersson C.E., Skarina T., Evdokimova E., Edwards A.M., Joachimiak A., et al. The 2.2Å resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction. J. Mol. Biol. 332:2003;1083-1094.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 1083-1094
-
-
Zhang, R.1
Andersson, C.E.2
Skarina, T.3
Evdokimova, E.4
Edwards, A.M.5
Joachimiak, A.6
-
8
-
-
0037224131
-
Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle
-
Zhang R., Andersson C.E., Savchenko A., Skarina T., Evdokimova E., Beasley S., et al. Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. Structure (Camb). 11:2003;31-42.
-
(2003)
Structure (Camb)
, vol.11
, pp. 31-42
-
-
Zhang, R.1
Andersson, C.E.2
Savchenko, A.3
Skarina, T.4
Evdokimova, E.5
Beasley, S.6
-
10
-
-
0011542799
-
The Pfam protein families database
-
Bateman A., Birney E., Cerruti L., Durbin R., Etwiller L., Eddy S.R., et al. The Pfam protein families database. Nucl. Acids Res. 30:2002;276-280.
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
-
11
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:1993;123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
12
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., et al. The Protein Data Bank. Nucl. Acids Res. 28:2000;235-242.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25:1997;3389-3402.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
15
-
-
33845377739
-
Anomerization of furanose sugars and sugar phosphates
-
Pierce J., Serianni A.S., Barker R. Anomerization of furanose sugars and sugar phosphates. J. Am. Chem. Soc. 107:1985;2448-2456.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 2448-2456
-
-
Pierce, J.1
Serianni, A.S.2
Barker, R.3
-
16
-
-
0036025574
-
Computational modeling of enzymatic keto-enol isomerization reactions
-
Feierberg I., Åqvist J. Computational modeling of enzymatic keto-enol isomerization reactions. Theor. Chem. Acc. 108:2002;71-84.
-
(2002)
Theor. Chem. Acc.
, vol.108
, pp. 71-84
-
-
Feierberg, I.1
Åqvist, J.2
-
17
-
-
0018786880
-
Inhibition of ribose-5-phosphate isomerase by 4-phosphoerythronate
-
Woodruff W.W. III, Wolfenden R. Inhibition of ribose-5-phosphate isomerase by 4-phosphoerythronate. J. Biol. Chem. 254:1979;5866-5867.
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 5866-5867
-
-
Woodruff III, W.W.1
Wolfenden, R.2
-
18
-
-
0034650538
-
D-Ribose-5-phosphate isomerase from spinach: Heterologous overexpression, purification, characterization, and site-directed mutagenesis of the recombinant enzyme
-
Jung C.H., Hartman F.C., Lu T.Y., Larimer F.W. D-Ribose-5-phosphate isomerase from spinach: heterologous overexpression, purification, characterization, and site-directed mutagenesis of the recombinant enzyme. Arch. Biochem. Biophys. 373:2000;409-417.
-
(2000)
Arch. Biochem. Biophys.
, vol.373
, pp. 409-417
-
-
Jung, C.H.1
Hartman, F.C.2
Lu, T.Y.3
Larimer, F.W.4
-
19
-
-
0014734211
-
Spectrophotometric assay for D-ribose-5-phosphateketol-isomerase and for D-ribulose-5-phosphate 3-epimerase
-
Wood T. Spectrophotometric assay for D-ribose-5-phosphateketol-isomerase and for D-ribulose-5-phosphate 3-epimerase. Anal. Biochem. 33:1970;297-306.
-
(1970)
Anal. Biochem.
, vol.33
, pp. 297-306
-
-
Wood, T.1
-
20
-
-
0033212815
-
Integration of macromolecular diffraction data
-
Leslie A.G. Integration of macromolecular diffraction data. Acta Crystallog. D Biol. Crystallog. 55:1999;1696-1702.
-
(1999)
Acta Crystallog. D Biol. Crystallog.
, vol.55
, pp. 1696-1702
-
-
Leslie, A.G.1
-
22
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computing Project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallog. D. 50:1994;760-763.
-
(1994)
Acta Crystallog. D
, vol.50
, pp. 760-763
-
-
-
23
-
-
0014432781
-
Solvent content of protein crystals
-
Matthews B.W. Solvent content of protein crystals. J. Mol. Biol. 33:1968;491-497.
-
(1968)
J. Mol. Biol.
, vol.33
, pp. 491-497
-
-
Matthews, B.W.1
-
24
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallog. A. 50:1994;157-163.
-
(1994)
Acta Crystallog. a
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
25
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.-Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
26
-
-
0030809260
-
WARP: Improvement and extension of crystallogaphic phases by weighted averaging of multiple-refined dummy atomic models
-
Perrakis A., Sixma T.K., Wilson K.S., Lamzin V.S. wARP: improvement and extension of crystallogaphic phases by weighted averaging of multiple-refined dummy atomic models. Acta Crystallog. D. 53:1997;448-455.
-
(1997)
Acta Crystallog. D
, vol.53
, pp. 448-455
-
-
Perrakis, A.1
Sixma, T.K.2
Wilson, K.S.3
Lamzin, V.S.4
-
28
-
-
0002906346
-
Around O
-
(Rossmann, M. G. & Arnold, E., eds)
-
Kleywegt, G. J., Zou, J. Y., Kjeldgaard, M. & Jones, T. A. (2001). Around O. In International Tables for Crystallography (Rossmann, M. G. & Arnold, E., eds), Vol. F, pp. 353-356.
-
(2001)
International Tables for Crystallography
, vol.F
, pp. 353-356
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, T.A.4
-
29
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallog. D. 53:1997;240-255.
-
(1997)
Acta Crystallog. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
30
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B., Richards F.M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55:1971;379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
31
-
-
0034479757
-
TOP: A new method for protein structure comparisons and similarity searches
-
Lu G. TOP: A new method for protein structure comparisons and similarity searches. J. Appl. Crystallog. 33:2000;176-183.
-
(2000)
J. Appl. Crystallog.
, vol.33
, pp. 176-183
-
-
Lu, G.1
-
32
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus K., Barrett C., Hughey R. Hidden Markov models for detecting remote protein homologies. Bioinformatics. 14:1998;846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
33
-
-
0030501419
-
Use of non-crystallographic symmetry in protein structure refinement
-
Kleywegt G.J. Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallog. D. 52:1996;842-857.
-
(1996)
Acta Crystallog. D
, vol.52
, pp. 842-857
-
-
Kleywegt, G.J.1
-
34
-
-
0030841589
-
Detecting folding motifs and similarities in protein structures
-
Kleywegt G.J., Jones T.A. Detecting folding motifs and similarities in protein structures. Methods Enzymol. 277:1997;525-545.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 525-545
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
35
-
-
0037245984
-
GenBank
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank. Nucl. Acids Res. 31:2003;23-27.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 23-27
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
36
-
-
0037250391
-
HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes
-
Garcia-Vallve S., Guzman E., Montero M.A., Romeu A. HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. Nucl. Acids Res. 31:2003;187-189.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 187-189
-
-
Garcia-Vallve, S.1
Guzman, E.2
Montero, M.A.3
Romeu, A.4
-
37
-
-
0034903751
-
Molray - A web interface between O and the POV-Ray ray tracer
-
Harris M., Jones T.A. Molray - a web interface between O and the POV-Ray ray tracer. Acta Crystallog. D. 57:2001;1201-1203.
-
(2001)
Acta Crystallog. D
, vol.57
, pp. 1201-1203
-
-
Harris, M.1
Jones, T.A.2
-
39
-
-
0030589514
-
Phi/Psi-cology: Ramachandran revisited
-
Kleywegt G.J., Jones T.A. Phi/Psi-cology: Ramachandran revisited. Structure. 4:1996;1395-1400.
-
(1996)
Structure
, vol.4
, pp. 1395-1400
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
40
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh R.A., Huber R. Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallog. A. 47:1991;392-400.
-
(1991)
Acta Crystallog. a
, vol.47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
|