-
1
-
-
0037329391
-
Bayes or bootstrap? a simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
-
Alfaro M.E., Zoller S., Lutzoni F. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol. Biol. Evol. 20:2003;255-266.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 255-266
-
-
Alfaro, M.E.1
Zoller, S.2
Lutzoni, F.3
-
2
-
-
0031253343
-
Investigating phylogenetic relationships within Apicomplexa using sequence data: The search for homology
-
Barta J.R. Investigating phylogenetic relationships within Apicomplexa using sequence data: the search for homology. Methods. 13:1997;81-88.
-
(1997)
Methods
, vol.13
, pp. 81-88
-
-
Barta, J.R.1
-
3
-
-
0035935660
-
Molecular approaches for inferring evolutionary relationships among protistan parasites
-
Barta J.R. Molecular approaches for inferring evolutionary relationships among protistan parasites. Vet. Parasitol. 101:2001;175-186.
-
(2001)
Vet. Parasitol.
, vol.101
, pp. 175-186
-
-
Barta, J.R.1
-
4
-
-
15444343012
-
Phylogenetic relationships among eight Eimeria species infecting domestic fowl inferred using complete small subunit ribosomal DNA sequences
-
Barta J.R., Martin D.S., Liberator P.A., Dashkevicz M., Anderson J.W., Feighner S.D., Elbrecht A., Perkins-Barrow A., Jenkins M.C., Danforth H.D., Ruff M.D., Profous-Juchelka H. Phylogenetic relationships among eight Eimeria species infecting domestic fowl inferred using complete small subunit ribosomal DNA sequences. J. Parasitol. 83:1997;262-271.
-
(1997)
J. Parasitol.
, vol.83
, pp. 262-271
-
-
Barta, J.R.1
Martin, D.S.2
Liberator, P.A.3
Dashkevicz, M.4
Anderson, J.W.5
Feighner, S.D.6
Elbrecht, A.7
Perkins-Barrow, A.8
Jenkins, M.C.9
Danforth, H.D.10
Ruff, M.D.11
Profous-Juchelka, H.12
-
5
-
-
0035114398
-
Molecular phylogeny of the other tissue coccidia: Lankesterella and Caryospora
-
Barta J.R., Martin D.S., Carreno R.A., Siddall M.E., Profous-Juchelka H., Hozza M., Powles M.A., Sundermann C. Molecular phylogeny of the other tissue coccidia: Lankesterella and Caryospora. J. Parasitol. 87:2001;121-127.
-
(2001)
J. Parasitol.
, vol.87
, pp. 121-127
-
-
Barta, J.R.1
Martin, D.S.2
Carreno, R.A.3
Siddall, M.E.4
Profous-Juchelka, H.5
Hozza, M.6
Powles, M.A.7
Sundermann, C.8
-
6
-
-
0033754957
-
Subset partitioning of the ribosomal DNA small subunit and its effects on the phylogeny of the Anopheles punctulatus group
-
Beebe N.W., Cooper R.D., Morrison D.A., Ellis J.T. Subset partitioning of the ribosomal DNA small subunit and its effects on the phylogeny of the Anopheles punctulatus group. Insect Mol. Biol. 9:2000;515-520.
-
(2000)
Insect Mol. Biol.
, vol.9
, pp. 515-520
-
-
Beebe, N.W.1
Cooper, R.D.2
Morrison, D.A.3
Ellis, J.T.4
-
7
-
-
0033013101
-
An eimeriid origin of isosporoid coccidia with stieda bodies as shown by phylogenetic analysis of small subunit ribosomal RNA gene sequences
-
Carreno R.A., Barta J.R. An eimeriid origin of isosporoid coccidia with stieda bodies as shown by phylogenetic analysis of small subunit ribosomal RNA gene sequences. J. Parasitol. 85:1999;77-83.
-
(1999)
J. Parasitol.
, vol.85
, pp. 77-83
-
-
Carreno, R.A.1
Barta, J.R.2
-
8
-
-
0032030943
-
Phylogenetic analysis of coccidia based on 18S rDNA sequence comparison indicates that Isospora is most closely related to Toxoplasma and Neospora
-
Carreno R.A., Schnitzler B.E., Jeffries A.C., Tenter A.M., Johnson A.M., Barta J.R. Phylogenetic analysis of coccidia based on 18S rDNA sequence comparison indicates that Isospora is most closely related to Toxoplasma and Neospora. J. Eukaryot. Microbiol. 45:1998;184-188.
-
(1998)
J. Eukaryot. Microbiol.
, vol.45
, pp. 184-188
-
-
Carreno, R.A.1
Schnitzler, B.E.2
Jeffries, A.C.3
Tenter, A.M.4
Johnson, A.M.5
Barta, J.R.6
-
9
-
-
0032882626
-
Cryptosporidium is more closely related to the gregarines than to coccidia as shown by phylogenetic analysis of apicomplexan parasites inferred using small-subunit ribosomal RNA gene sequences
-
Carreno R.A., Martin D.S., Barta J.R. Cryptosporidium is more closely related to the gregarines than to coccidia as shown by phylogenetic analysis of apicomplexan parasites inferred using small-subunit ribosomal RNA gene sequences. Parasitol. Res. 85:1999;899-904.
-
(1999)
Parasitol. Res.
, vol.85
, pp. 899-904
-
-
Carreno, R.A.1
Martin, D.S.2
Barta, J.R.3
-
10
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17:2000;540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
11
-
-
0032587793
-
Phylogenetic analysis of Sarcocystis spp. of mammals and reptiles supports the coevolution of Sarcocystis spp. with their final hosts
-
Doležel D., Koudela B., Jirků M., Hypša V., Oborník M., Votýpka J., Modrý D., Šlapeta J.R., Lukeš J. Phylogenetic analysis of Sarcocystis spp. of mammals and reptiles supports the coevolution of Sarcocystis spp. with their final hosts. Int. J. Parasitol. 29:1999;795-798.
-
(1999)
Int. J. Parasitol.
, vol.29
, pp. 795-798
-
-
Doležel, D.1
Koudela, B.2
Jirků, M.3
Hypša, V.4
Oborník, M.5
Votýpka, J.6
Modrý, D.7
Šlapeta, J.R.8
Lukeš, J.9
-
12
-
-
0037329108
-
Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
-
Douady C.J., Delsuc F., Boucher Y., Doolittle W.F., Douzery E.J.P. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20:2003;248-254.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 248-254
-
-
Douady, C.J.1
Delsuc, F.2
Boucher, Y.3
Doolittle, W.F.4
Douzery, E.J.P.5
-
13
-
-
0032717562
-
Morphologic and molecular characterization of new Cyclospora species from Ethiopian monkeys: C. cercopitheci sp.n., C. colobi sp.n., and C. papionis sp.n
-
Eberhard M.L., da Silva A.J., Lilley B.G., Pieniazek N.J. Morphologic and molecular characterization of new Cyclospora species from Ethiopian monkeys: C. cercopitheci sp.n., C. colobi sp.n., and C. papionis sp.n. Emerg. Infect. Dis. 5:1999;651-658.
-
(1999)
Emerg. Infect. Dis.
, vol.5
, pp. 651-658
-
-
Eberhard, M.L.1
Da Silva, A.J.2
Lilley, B.G.3
Pieniazek, N.J.4
-
14
-
-
0028828164
-
Effects of sequence alignment on the phylogeny of Sarcocystis deduced from 18S rDNA sequences
-
Ellis J., Morrison D.A. Effects of sequence alignment on the phylogeny of Sarcocystis deduced from 18S rDNA sequences. Parasitol. Res. 81:1995;696-699.
-
(1995)
Parasitol. Res.
, vol.81
, pp. 696-699
-
-
Ellis, J.1
Morrison, D.A.2
-
15
-
-
0032893594
-
The genus Hammondia is paraphyletic
-
Ellis J.T., Morrison D.A., Liddell S., Jenkins M.C., Mohammed O.B., Ryce C., Dubey J.P. The genus Hammondia is paraphyletic. Parasitology. 118:1999;357-362.
-
(1999)
Parasitology
, vol.118
, pp. 357-362
-
-
Ellis, J.T.1
Morrison, D.A.2
Liddell, S.3
Jenkins, M.C.4
Mohammed, O.B.5
Ryce, C.6
Dubey, J.P.7
-
16
-
-
0034510434
-
Molecular phylogeny of Besnoitia and the genetic relationships among Besnoitia of cattle, wildebeest and goats
-
Ellis J.T., Holmdahl O.J.M., Ryce C., Njenga J.M., Harper P.A.W., Morrison D.A. Molecular phylogeny of Besnoitia and the genetic relationships among Besnoitia of cattle, wildebeest and goats. Protist. 151:2000;329-336.
-
(2000)
Protist
, vol.151
, pp. 329-336
-
-
Ellis, J.T.1
Holmdahl, O.J.M.2
Ryce, C.3
Njenga, J.M.4
Harper, P.A.W.5
Morrison, D.A.6
-
17
-
-
0033826523
-
Taxonomic position of the human intestinal protozoan parasite Isospora belli as based on ribosomal RNA sequences
-
Franzen C., Müller A., Bialek R., Diehl V., Salzberger B., Fätkenheuer G. Taxonomic position of the human intestinal protozoan parasite Isospora belli as based on ribosomal RNA sequences. Parasitol. Res. 86:2000;669-676.
-
(2000)
Parasitol. Res.
, vol.86
, pp. 669-676
-
-
Franzen, C.1
Müller, A.2
Bialek, R.3
Diehl, V.4
Salzberger, B.5
Fätkenheuer, G.6
-
18
-
-
0030590363
-
Secondary structures and features of the 18S, 5.8S and 26S ribosomal RNAs from the Apicomplexan parasite Toxoplasma gondii
-
Gagnon S., Bourbeau D., Levesque R.C. Secondary structures and features of the 18S, 5.8S and 26S ribosomal RNAs from the Apicomplexan parasite Toxoplasma gondii. Gene. 173:1996;129-135.
-
(1996)
Gene
, vol.173
, pp. 129-135
-
-
Gagnon, S.1
Bourbeau, D.2
Levesque, R.C.3
-
19
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
Galtier N. Maximum-likelihood phylogenetic analysis under a covarion-like model. Mol. Biol. Evol. 18:2001;866-873.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
20
-
-
0034043777
-
The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence
-
Hickson R.E., Simon C., Perrey S.W. The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence. Mol. Biol. Evol. 17:2000;530-539.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 530-539
-
-
Hickson, R.E.1
Simon, C.2
Perrey, S.W.3
-
21
-
-
0032835838
-
Taxonomy and systematics of some Eimeria species of murid rodents as determined by the ITS1 region of the ribosomal gene complex
-
Hnida J.A., Duszynski D.W. Taxonomy and systematics of some Eimeria species of murid rodents as determined by the ITS1 region of the ribosomal gene complex. Parasitology. 119:1999;349-357.
-
(1999)
Parasitology
, vol.119
, pp. 349-357
-
-
Hnida, J.A.1
Duszynski, D.W.2
-
22
-
-
0033071637
-
Evolution of ruminant Sarcocystis (Sporozoa) parasites based on small subunit rDNA sequences
-
Holmdahl O.J.M., Morrison D.A., Ellis J.T., Huong L.T.T. Evolution of ruminant Sarcocystis (Sporozoa) parasites based on small subunit rDNA sequences. Mol. Phylogenet. Evol. 11:1999;27-37.
-
(1999)
Mol. Phylogenet. Evol.
, vol.11
, pp. 27-37
-
-
Holmdahl, O.J.M.1
Morrison, D.A.2
Ellis, J.T.3
Huong, L.T.T.4
-
23
-
-
0036097894
-
Testing a covariotide model of DNA substitution
-
Huelsenbeck J.P. Testing a covariotide model of DNA substitution. Mol. Biol. Evol. 19:2002;698-707.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
24
-
-
0031436890
-
Phylogeny estimation and hypothesis testing using maximum likelihood
-
Huelsenbeck J.P., Crandall K.A. Phylogeny estimation and hypothesis testing using maximum likelihood. Annu. Rev. Ecol. Syst. 28:1997;437-466.
-
(1997)
Annu. Rev. Ecol. Syst.
, vol.28
, pp. 437-466
-
-
Huelsenbeck, J.P.1
Crandall, K.A.2
-
25
-
-
0031240064
-
Identification of synapomorphic characters in the genus Sarcocystis based on 18S rDNA sequence comparison
-
Jeffries A.C., Schnitzler B., Heydorn A.O., Johnson A.M., Tenter A.M. Identification of synapomorphic characters in the genus Sarcocystis based on 18S rDNA sequence comparison. J. Eukaryot. Microbiol. 44:1997;388-392.
-
(1997)
J. Eukaryot. Microbiol.
, vol.44
, pp. 388-392
-
-
Jeffries, A.C.1
Schnitzler, B.2
Heydorn, A.O.3
Johnson, A.M.4
Tenter, A.M.5
-
26
-
-
0032814759
-
The relationship of Hammondia hammondi and Sarcocystis mucosa to other heteroxenous cyst-forming coccidia as inferred by phylogenetic analysis of the 18S SSU ribosomal DNA sequence
-
Jenkins M.C., Ellis J.T., Liddell S., Ryce C., Munday B.L., Morrison D.A., Dubey J.P. The relationship of Hammondia hammondi and Sarcocystis mucosa to other heteroxenous cyst-forming coccidia as inferred by phylogenetic analysis of the 18S SSU ribosomal DNA sequence. Parasitology. 119:1999;135-142.
-
(1999)
Parasitology
, vol.119
, pp. 135-142
-
-
Jenkins, M.C.1
Ellis, J.T.2
Liddell, S.3
Ryce, C.4
Munday, B.L.5
Morrison, D.A.6
Dubey, J.P.7
-
27
-
-
0036966813
-
The phylogeny of Goussia and Choleoeimeria (Apicomplexa: Eimeriorina) and the evolution of excystation structures in coccidia
-
Jirků M., Modrý D., Šlapeta J.R., Koudela B., Lukeš J. The phylogeny of Goussia and Choleoeimeria (Apicomplexa: Eimeriorina) and the evolution of excystation structures in coccidia. Protist. 153:2002;379-390.
-
(2002)
Protist
, vol.153
, pp. 379-390
-
-
Jirků, M.1
Modrý, D.2
Šlapeta, J.R.3
Koudela, B.4
Lukeš, J.5
-
28
-
-
0036296285
-
Clinical large intestinal coccidiosis in camels (Camelus dromedarius) in the United Arab Emirates: Description of lesions, endogenous stages, and redescription of Isospora orlovi, Tsygankov, 1950 oocysts
-
Kinne J., Ali M., Wernery U., Dubey J.P. Clinical large intestinal coccidiosis in camels (Camelus dromedarius) in the United Arab Emirates: description of lesions, endogenous stages, and redescription of Isospora orlovi, Tsygankov, 1950 oocysts. J. Parasitol. 88:2002;548-552.
-
(2002)
J. Parasitol.
, vol.88
, pp. 548-552
-
-
Kinne, J.1
Ali, M.2
Wernery, U.3
Dubey, J.P.4
-
29
-
-
0036863450
-
The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to Apicomplexans
-
Kuvardina O.N., Leander B.S., Aleshin V.V., Myl'Nikov A.P., Keeling P.J., Simdyanov T.G. The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to Apicomplexans. J. Eukaryot. Microbiol. 49:2002;498-504.
-
(2002)
J. Eukaryot. Microbiol.
, vol.49
, pp. 498-504
-
-
Kuvardina, O.N.1
Leander, B.S.2
Aleshin, V.V.3
Myl'Nikov, A.P.4
Keeling, P.J.5
Simdyanov, T.G.6
-
30
-
-
0004180947
-
-
J.J. Lee, G.F. Leedale, & P. Bradbury. Lawrence, KA: Society of Protozoologists
-
Lee J.J., Leedale G.F., Bradbury P. Illustrated Guide to the Protozoa. 2nd ed. 2000;Society of Protozoologists, Lawrence, KA.
-
(2000)
Illustrated Guide to the Protozoa 2nd Ed.
-
-
-
31
-
-
0036897677
-
Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling
-
Lin Y.-H., McLenachan P.A., Gore A.R., Phillips M.J., Ota R., Hendy M.D., Penny D. Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling. Mol. Biol. Evol. 19:2002;2060-2070.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 2060-2070
-
-
Lin, Y.-H.1
McLenachan, P.A.2
Gore, A.R.3
Phillips, M.J.4
Ota, R.5
Hendy, M.D.6
Penny, D.7
-
32
-
-
0031019270
-
Biology of Isospora spp. from humans, nonhuman primates, and domestic animals
-
Lindsay D.S., Dubey J.P., Blagburn B.L. Biology of Isospora spp. from humans, nonhuman primates, and domestic animals. Clin. Microbiol. Rev. 10:1997;19-34.
-
(1997)
Clin. Microbiol. Rev.
, vol.10
, pp. 19-34
-
-
Lindsay, D.S.1
Dubey, J.P.2
Blagburn, B.L.3
-
33
-
-
0031852105
-
A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages
-
Lockhart P.J., Steel M.A., Barbrook A.C., Huson D.H., Charleston M.A., Howe C.J. A covariotide model explains apparent phylogenetic structure of oxygenic photosynthetic lineages. Mol. Biol. Evol. 15:1998;1183-1188.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1183-1188
-
-
Lockhart, P.J.1
Steel, M.A.2
Barbrook, A.C.3
Huson, D.H.4
Charleston, M.A.5
Howe, C.J.6
-
34
-
-
0033402788
-
Molecular characterization of Cyclospora-like organisms from baboons
-
Lopez F.A., Manglicmot J., Schmidt T.M., Yeh C., Smith H.V., Relman D.A. Molecular characterization of Cyclospora-like organisms from baboons. J. Infect. Dis. 179:1999;670-676.
-
(1999)
J. Infect. Dis.
, vol.179
, pp. 670-676
-
-
Lopez, F.A.1
Manglicmot, J.2
Schmidt, T.M.3
Yeh, C.4
Smith, H.V.5
Relman, D.A.6
-
35
-
-
0034351388
-
Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
-
Lutzoni F., Wagner P., Reeb V., Zoller S. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology. Syst. Biol. 49:2000;628-651.
-
(2000)
Syst. Biol.
, vol.49
, pp. 628-651
-
-
Lutzoni, F.1
Wagner, P.2
Reeb, V.3
Zoller, S.4
-
37
-
-
0034078362
-
Phylogenetic relationships of Hepatozoon (Apicomplexa: Adeleorina) based on molecular, morphologic, and life-cycle characters
-
Mathew J.S., van den Bussche R.A., Ewing S.A., Malayer J.R., Latha B.R., Panciera R.J. Phylogenetic relationships of Hepatozoon (Apicomplexa: Adeleorina) based on molecular, morphologic, and life-cycle characters. J. Parasitol. 86:2000;366-372.
-
(2000)
J. Parasitol.
, vol.86
, pp. 366-372
-
-
Mathew, J.S.1
Van Den Bussche, R.A.2
Ewing, S.A.3
Malayer, J.R.4
Latha, B.R.5
Panciera, R.J.6
-
39
-
-
0034985921
-
Phylogenetic position of a renal coccidium of the European green frogs, Isospora lieberkuehni Labbé, 1894 (Apicomplexa: Sarcocystidae) and its taxonomic implications
-
Modrý D., Šlapeta J.R., Jirků M., Oborník M., Lukeš J., Koudela B. Phylogenetic position of a renal coccidium of the European green frogs, Isospora lieberkuehni Labbé, 1894 (Apicomplexa: Sarcocystidae) and its taxonomic implications. Int. J. Syst. Evol. Microbiol. 51:2001;767-772.
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 767-772
-
-
Modrý, D.1
Šlapeta, J.R.2
Jirků, M.3
Oborník, M.4
Lukeš, J.5
Koudela, B.6
-
40
-
-
0030934592
-
Effects of nucleotide sequence alignment on phylogeny estimation: A case study of 18S rDNAs of Apicomplexa
-
Morrison D.A., Ellis J.T. Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of Apicomplexa. Mol. Biol. Evol. 14:1997;428-441.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 428-441
-
-
Morrison, D.A.1
Ellis, J.T.2
-
41
-
-
0032704628
-
Phylogenetic analysis based on full-length large subunit ribosomal RNA gene sequence comparison reveals that Neospora caninum is more closely related to Hammondia heydorni than to Toxoplasma gondii
-
Mugridge N.B., Morrison D.A., Heckeroth A.R., Johnson A.M., Tenter A.M. Phylogenetic analysis based on full-length large subunit ribosomal RNA gene sequence comparison reveals that Neospora caninum is more closely related to Hammondia heydorni than to Toxoplasma gondii. Int. J. Parasitol. 29:1999;1545-1556.
-
(1999)
Int. J. Parasitol.
, vol.29
, pp. 1545-1556
-
-
Mugridge, N.B.1
Morrison, D.A.2
Heckeroth, A.R.3
Johnson, A.M.4
Tenter, A.M.5
-
42
-
-
0033635895
-
Effects of sequence alignment and structural domains of ribosomal DNA on phylogeny reconstruction for the protozoan family Sarcocystidae
-
Mugridge N.B., Morrison D.A., Jäkel T., Heckeroth A.R., Tenter A.M., Johnson A.M. Effects of sequence alignment and structural domains of ribosomal DNA on phylogeny reconstruction for the protozoan family Sarcocystidae. Mol. Biol. Evol. 17:2000;1842-1853.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1842-1853
-
-
Mugridge, N.B.1
Morrison, D.A.2
Jäkel, T.3
Heckeroth, A.R.4
Tenter, A.M.5
Johnson, A.M.6
-
43
-
-
0036197940
-
Notes on coccidian phylogeny, based on the apicoplast small subunit ribosomal DNA
-
Oborník M., Jirků M., Šlapeta J.R., Modrý D., Koudela B., Lukeš J. Notes on coccidian phylogeny, based on the apicoplast small subunit ribosomal DNA. Parasitol. Res. 88:2002;360-363.
-
(2002)
Parasitol. Res.
, vol.88
, pp. 360-363
-
-
Oborník, M.1
Jirků, M.2
Šlapeta, J.R.3
Modrý, D.4
Koudela, B.5
Lukeš, J.6
-
44
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page R.D.M. TreeView: an application to display phylogenetic trees on personal computers. Comput. Applic. Biosci. 12:1996;357-358.
-
(1996)
Comput. Applic. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
46
-
-
0034857322
-
Phylogeny of nuclear small subunit rRNA genes of hemogregarines amplified with specific primers
-
Perkins S.L., Keller A.K. Phylogeny of nuclear small subunit rRNA genes of hemogregarines amplified with specific primers. J. Parasitol. 87:2001;870-876.
-
(2001)
J. Parasitol.
, vol.87
, pp. 870-876
-
-
Perkins, S.L.1
Keller, A.K.2
-
47
-
-
0031183189
-
Reevaluating the molecular taxonomy: Is human-associated Cyclospora a mammalian Eimeria species?
-
Pieniazek N.J., Herwaldt B.L. Reevaluating the molecular taxonomy: is human-associated Cyclospora a mammalian Eimeria species? Emerg. Infect. Dis. 3:1997;381-383.
-
(1997)
Emerg. Infect. Dis.
, vol.3
, pp. 381-383
-
-
Pieniazek, N.J.1
Herwaldt, B.L.2
-
48
-
-
0030065730
-
Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species
-
Relman D.A., Schmidt T.M., Gajadhar A., Sogin M., Cross J., Yoder K., Sethabutr O., Echeverria P. Molecular phylogenetic analysis of Cyclospora, the human intestinal pathogen, suggests that it is closely related to Eimeria species. J. Infect. Dis. 173:1996;440-445.
-
(1996)
J. Infect. Dis.
, vol.173
, pp. 440-445
-
-
Relman, D.A.1
Schmidt, T.M.2
Gajadhar, A.3
Sogin, M.4
Cross, J.5
Yoder, K.6
Sethabutr, O.7
Echeverria, P.8
-
49
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:2003;1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
51
-
-
0037386513
-
Cyclospora cayetanensis: A review of an emerging parasitic coccidium
-
Shields J.M., Olson B.H. Cyclospora cayetanensis: a review of an emerging parasitic coccidium. Int. J. Parasitol. 33:2003;371-391.
-
(2003)
Int. J. Parasitol.
, vol.33
, pp. 371-391
-
-
Shields, J.M.1
Olson, B.H.2
-
52
-
-
0142075770
-
Recent origins among ancient parasites
-
Sibley L.D. Recent origins among ancient parasites. Vet. Parasitol. 115:2003;185-198.
-
(2003)
Vet. Parasitol.
, vol.115
, pp. 185-198
-
-
Sibley, L.D.1
-
53
-
-
0035068111
-
Multiple origin of the dihomoxenous life cycle in sarcosporidia
-
Šlapeta J.R., Modrý D., Votýpka J., Jirků M., Koudela B., Lukeš J. Multiple origin of the dihomoxenous life cycle in sarcosporidia. Int. J. Parasitol. 31:2001;413-417.
-
(2001)
Int. J. Parasitol.
, vol.31
, pp. 413-417
-
-
Šlapeta, J.R.1
Modrý, D.2
Votýpka, J.3
Jirků, M.4
Koudela, B.5
Lukeš, J.6
-
54
-
-
0035113480
-
Eimeria telekii n.sp., (Apicomplexa: Coccidia) from Lemniscomys striatus (Rodentia: Muridae): Morphology, pathology and phylogeny
-
Šlapeta J.R., Modrý D., Votýpka J., Jirků M., Oborník M., Lukeš J., Koudela B. Eimeria telekii n.sp., (Apicomplexa: Coccidia) from Lemniscomys striatus (Rodentia: Muridae): morphology, pathology and phylogeny. Parasitology. 122:2001;133-143.
-
(2001)
Parasitology
, vol.122
, pp. 133-143
-
-
Šlapeta, J.R.1
Modrý, D.2
Votýpka, J.3
Jirků, M.4
Oborník, M.5
Lukeš, J.6
Koudela, B.7
-
55
-
-
0036041394
-
Phylogeny and sequence variability in the Sarcocystis singaporensis Zaman and Colley, (1975) 1976 ssrDNA
-
Šlapeta J.R., Kyselová I., Richardson A.O., Modrý D., Lukeš J. Phylogeny and sequence variability in the Sarcocystis singaporensis Zaman and Colley, (1975) 1976 ssrDNA. Parasitol. Res. 88:2002;810-815.
-
(2002)
Parasitol. Res.
, vol.88
, pp. 810-815
-
-
Šlapeta, J.R.1
Kyselová, I.2
Richardson, A.O.3
Modrý, D.4
Lukeš, J.5
-
56
-
-
0037064586
-
Dog shedding oocysts of Neospora caninum: PCR diagnosis and molecular phylogenetic approach
-
Šlapeta J.R., Modrý D., Kyselová I., Hořejš R., Lukeš J., Koudela B. Dog shedding oocysts of Neospora caninum: PCR diagnosis and molecular phylogenetic approach. Vet. Parasitol. 109:2002;157-167.
-
(2002)
Vet. Parasitol.
, vol.109
, pp. 157-167
-
-
Šlapeta, J.R.1
Modrý, D.2
Kyselová, I.3
Hořejš, R.4
Lukeš, J.5
Koudela, B.6
-
57
-
-
0036490773
-
Coprodiagnosis of Hammondia heydorni in dogs by PCR based of ITS 1 rRNA: Differentiation from morphologically indistinguishable oocysts of Neospora caninum
-
Šlapeta J.R., Koudela B., Votýpka J., Modrý D., Hořejš R., Lukeš J. Coprodiagnosis of Hammondia heydorni in dogs by PCR based of ITS 1 rRNA: differentiation from morphologically indistinguishable oocysts of Neospora caninum. Vet. J. 163:2002;147-154.
-
(2002)
Vet. J.
, vol.163
, pp. 147-154
-
-
Šlapeta, J.R.1
Koudela, B.2
Votýpka, J.3
Modrý, D.4
Hořejš, R.5
Lukeš, J.6
-
58
-
-
0038104879
-
Evolutionary relationships among cyst-forming coccidia Sarcocystis spp. (Alveolata: Apicomplexa: Coccidea) in endemic African tree vipers and perspective for evolution of heteroxenous life cycle
-
Šlapeta J.R., Modrý D., Votýpka J., Jirků M., Lukeš J., Koudela B. Evolutionary relationships among cyst-forming coccidia Sarcocystis spp. (Alveolata: Apicomplexa: Coccidea) in endemic African tree vipers and perspective for evolution of heteroxenous life cycle. Mol. Phylogenet. Evol. 27:2003;464-475.
-
(2003)
Mol. Phylogenet. Evol.
, vol.27
, pp. 464-475
-
-
Šlapeta, J.R.1
Modrý, D.2
Votýpka, J.3
Jirků, M.4
Lukeš, J.5
Koudela, B.6
-
59
-
-
0027951531
-
Rooting molecular trees: Problems and strategies
-
Smith A.B. Rooting molecular trees: problems and strategies. Biol. J. Linn. Soc. 51:1994;279-292.
-
(1994)
Biol. J. Linn. Soc.
, vol.51
, pp. 279-292
-
-
Smith, A.B.1
-
60
-
-
0003117296
-
Amplification of ribosomal RNA genes for molecular evolution studies
-
M.A. Innes, D.H. Gelfand, J.J. Sninsky, & T.J. White. San Diego, CA: Academic Press
-
Sogin M.L. Amplification of ribosomal RNA genes for molecular evolution studies. Innes M.A., Gelfand D.H., Sninsky J.J., White T.J. PCR Protocols: A Guide to Methods and Applications. 1990;307-322 Academic Press, San Diego, CA.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
, pp. 307-322
-
-
Sogin, M.L.1
-
61
-
-
0034350429
-
Invariable sites models and their use in phylogeny reconstruction
-
Steel M., Huson D., Lockhart P.J. Invariable sites models and their use in phylogeny reconstruction. Syst. Biol. 49:2000;225-232.
-
(2000)
Syst. Biol.
, vol.49
, pp. 225-232
-
-
Steel, M.1
Huson, D.2
Lockhart, P.J.3
-
62
-
-
0029836454
-
Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
-
Strimmer K., von Haesler A. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:1996;964-969.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Von Haesler, A.2
-
63
-
-
0001336205
-
Phylogenetic inference
-
D.M. Hillis, C. Moritz, & B.K. Mable. Sunderland, MA: Sinauer Associates
-
Swofford D.L., Olsen G.J., Waddell P.J., Hillis D.M. Phylogenetic inference. Hillis D.M., Moritz C., Mable B.K. Molecular Systematics. 2nd ed. 1996;407-514 Sinauer Associates, Sunderland, MA.
-
(1996)
Molecular Systematics 2nd Ed.
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
64
-
-
0030861410
-
Phylogeny of the tissue cyst-forming coccidia
-
Tenter A.M., Johnson A.M. Phylogeny of the tissue cyst-forming coccidia. Adv. Parasitol. 39:1997;69-139.
-
(1997)
Adv. Parasitol.
, vol.39
, pp. 69-139
-
-
Tenter, A.M.1
Johnson, A.M.2
-
65
-
-
0036208053
-
The conceptual basis for a new classification of the coccidia
-
Tenter A.M., Barta J.R., Beveridge I., Duszynski D.W., Mehlhorn H., Morrison D.A., Thompson R.C.A., Conrad P.A. The conceptual basis for a new classification of the coccidia. Int. J. Parasitol. 32:2002;595-616.
-
(2002)
Int. J. Parasitol.
, vol.32
, pp. 595-616
-
-
Tenter, A.M.1
Barta, J.R.2
Beveridge, I.3
Duszynski, D.W.4
Mehlhorn, H.5
Morrison, D.A.6
Thompson, R.C.A.7
Conrad, P.A.8
-
66
-
-
2642597082
-
Molecular phylogenetic relatedness of Frenkelia spp. (Protozoa, Apicomplexa) to Sarcocystis falcatula Stiles, 1893: Is the genus Sarcocystis paraphyletic?
-
Votýpka J., Hypša V., Jirků M., Flegr J., Vávra J., Lukeš J. Molecular phylogenetic relatedness of Frenkelia spp. (Protozoa, Apicomplexa) to Sarcocystis falcatula Stiles, 1893: is the genus Sarcocystis paraphyletic? J. Eukaryot. Microbiol. 45:1998;137-141.
-
(1998)
J. Eukaryot. Microbiol.
, vol.45
, pp. 137-141
-
-
Votýpka, J.1
Hypša, V.2
Jirků, M.3
Flegr, J.4
Vávra, J.5
Lukeš, J.6
-
67
-
-
0031297695
-
General time-reversible distances with unequal rates across sites: Mixing Γ and inverse gaussian distributions with invariant sites
-
Waddell P.J., Steel M.A. General time-reversible distances with unequal rates across sites: mixing Γ and inverse gaussian distributions with invariant sites. Mol. Phylogenet. Evol. 8:1997;398-414.
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 398-414
-
-
Waddell, P.J.1
Steel, M.A.2
-
69
-
-
0037137539
-
Host adaptation and host-parasite co-evolution in Cryptosporidium: Implications for taxonomy and public health
-
Xiao L., Sulaiman I.M., Ryan U.M., Zhou L., Atwill E.R., Tischler M.L., Zhang X., Fayer R., Lal A.A. Host adaptation and host-parasite co-evolution in Cryptosporidium: implications for taxonomy and public health. Int. J. Parasitol. 32:2002;1773-1785.
-
(2002)
Int. J. Parasitol.
, vol.32
, pp. 1773-1785
-
-
Xiao, L.1
Sulaiman, I.M.2
Ryan, U.M.3
Zhou, L.4
Atwill, E.R.5
Tischler, M.L.6
Zhang, X.7
Fayer, R.8
Lal, A.A.9
-
70
-
-
0035400170
-
Analysis of the 18S rRNA genes of Sarcocystis species suggests that the morphologically similar organisms from cattle and water buffalo should be considered the same species
-
Yang Z.-Q., Zuo Y.-X., Yao Y.-G., Chen X.-W., Yang G.-C., Zhang Y.-P. Analysis of the 18S rRNA genes of Sarcocystis species suggests that the morphologically similar organisms from cattle and water buffalo should be considered the same species. Mol. Biochem. Parasitol. 115:2001;283-288.
-
(2001)
Mol. Biochem. Parasitol.
, vol.115
, pp. 283-288
-
-
Yang, Z.-Q.1
Zuo, Y.-X.2
Yao, Y.-G.3
Chen, X.-W.4
Yang, G.-C.5
Zhang, Y.-P.6
-
71
-
-
0035004130
-
Phylogenetic relationships among rodent Eimeria species determined by plastid ORF470 and nuclear 18S rDNA sequences
-
Zhao X., Duszynski D.W. Phylogenetic relationships among rodent Eimeria species determined by plastid ORF470 and nuclear 18S rDNA sequences. Int. J. Parasitol. 31:2001;715-719.
-
(2001)
Int. J. Parasitol.
, vol.31
, pp. 715-719
-
-
Zhao, X.1
Duszynski, D.W.2
-
72
-
-
0034924583
-
Molecular phylogenies suggest the oocyst residuum can be used to distinguish two independent lineages of Eimeria spp in rodents
-
Zhao X., Duszynski D.W. Molecular phylogenies suggest the oocyst residuum can be used to distinguish two independent lineages of Eimeria spp in rodents. Parasitol. Res. 87:2001;638-643.
-
(2001)
Parasitol. Res.
, vol.87
, pp. 638-643
-
-
Zhao, X.1
Duszynski, D.W.2
-
73
-
-
0034777607
-
Phylogenetic position of Eimeria antrozoi, a bat coccidium (Apicomplexa: Eimeriidae) and its relationship to morphologically similar Eimeria spp. from bats and rodents based on nuclear 18S and plastid 23S rDNA sequences
-
Zhao X., Duszynski D.W., Loker E.S. Phylogenetic position of Eimeria antrozoi, a bat coccidium (Apicomplexa: Eimeriidae) and its relationship to morphologically similar Eimeria spp. from bats and rodents based on nuclear 18S and plastid 23S rDNA sequences. J. Parasitol. 87:2001;1120-1123.
-
(2001)
J. Parasitol.
, vol.87
, pp. 1120-1123
-
-
Zhao, X.1
Duszynski, D.W.2
Loker, E.S.3
|