Conformations of Co-translational folding intermediates

Protein and Peptide Letters

Volumn 12, Issue 2, 2005, Pages 189-195

  Evans, Michael S ^a   Clarke IV, Thomas F ^a   Clark, Patricia L ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

Author keywords

Aggregation; Co translational; Folding; Intermediate; Misfolding; Protein; Ribosome; Translation

Indexed keywords

PEPTIDE;

CHEMISTRY; EUKARYOTIC CELL; METABOLISM; PHYSIOLOGY; PROKARYOTIC CELL; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN SYNTHESIS; REVIEW; RIBOSOME;

EUKARYOTIC CELLS; PEPTIDES; PROKARYOTIC CELLS; PROTEIN BIOSYNTHESIS; PROTEIN CONFORMATION; PROTEIN FOLDING; RIBOSOMES;

EID: 14844320606     PISSN: 09298665     EISSN: None     Source Type: Journal    
DOI: 10.2174/0929866053005908     Document Type: Review

References (74)

1. Dill, K. A. and Chan, H. S. (1997) Nat. Struct. Biol., 4, 10-19.
2. Levinthal, C. (1968) Chim. Phys., 65, 44-45.
3. Crowhurst, K. A.; Tollinger, M. and Forman-Kay, J. D. (2002) J. Mol. Biol., 322, 163-178.
4. Tcherkasskaya, O. and Uversky, V. N. (2003) Protein Pept. Lett., 10, 239-245.
5. Klein-Seetharaman, J.; Oikawa, M.; Grimshaw, S. B.; Wirmer, J.; Duchardt, E.; Ueda, T.; Imoto, T.; Smith, L. J.; Dobson, C. M. and Schwalbe, H. (2002) Science, 295, 1719-1722.
6. Arai, M. and Kuwajima, K. (2000) Adv. Protein Chem., 53, 209-282.
7. Plaxco, K. W.; Simons, K. T. and Baker, D. (1998) J. Mol. Biol., 277, 985-994.
8. Ivankov, D. N.; Garbuzynskiy, S. O.; Alm, E.; Plaxco, K. W.; Baker, D. and Finkelstein, A. V. (2003) Protein Sci., 12, 2057-2062.
9. Seckler, R.; Fuchs, A.; King, J. and Jaenicke, R. (1989) J. Biol. Chem., 264, 11750-11753.
10. Fedorov, A. N. and Baldwin, T. O. (1999) J. Mol. Biol., 294, 579-586.
11. Ghaemmaghami, S. and Oas, T. G. (2001) Nat. Struct. Biol., 8, 879-882.
12. Ignatova, Z. and Gierasch, L. M. (2004) Proc. Natl Acad. Sci. USA, 101, 523-8.
13. Fuchs, A.; Seiderer, C. and Seckler, R. (1991) Biochemistry, 30, 6598-6604.
14. Goldenberg, D.; Berget, P. and King, J. (1982) J. Biol. Chem., 257, 7864-7871.
15. Frydman, J. (2001) Ann. Rev. Biochem., 70, 603-647.
16. Hartl, F. U. and Hayer-Hartl, M. (2002) Science, 295, 1852-1858.
17. Deuerling, E.; Schulze-Specking, A.; Tomoyasu, T.; Mogk, A. and Bukau, B. (1999) Nature, 400, 693-696.
18. Teter, S. A.; Houry, W. A.; Ang, D.; Tradler, T.; Rockabrand, D.; Fischer, G.; Blum, P.; Georgopoulos, C. and Hartl, F. U. (1999) Cell, 97, 755-765.
19. Muller, M.; Koch, H. G.; Beck, K. and Schafer, U. (2001) Prog. Nucleic Acid Res. Mol. Biol., 66, 107-157.
20. Goldberg, M. E.; Rudolph, R. and Jaenicke, R. (1991) Biochemistry, 30, 2790-2797.
21. King, J.; Haase-Pettingell, C.; Robinson, A. S.; Speed, M. and Mitraki, A. (1996) FASEB J., 10, 57-66.
22. Chiti, F.; Taddei, N.; Baroni, F.; Capanni, C.; Stefani, M.; Ramponi, G. and Dobson, C. M. (2002) Nat. Struct. Biol., 9, 137-143.
23. Chiti, F.; Stefani, M.; Taddei, N.; Ramponi, G. and Dobson, C. M. (2003) Nature, 424, 805-808.
24. Ellis, R. J. (2001) Trends Biochem. Sci., 26, 597-604.
25. van den Berg, B.; Wain, R.; Dobson, C. M. and Ellis, R. J. (2000) EMBO J., 19, 3870-3875.
26. Sasahara, K.; McPhie, P. and Minton, A. P. (2003) J. Mol. Biol., 326, 1227-1237.
27. Qu, Y. and Bolen, D. W. (2002) Biophys. Chem., 101-102, 155-165.
28. van den Berg, B.; Ellis, R. J. and Dobson, C. M. (1999) EMBO J., 18, 6927-6933.
29. Tokuriki, N.; Kinjo, M.; Negi, S.; Hoshino, M.; Goto, Y.; Urabe, I. and Yomo, T. (2004) Protein Sci., 13, 125-133.
30. Dedmon, M. M.; Patel, C. N.; Young, G. B. and Pielak, G. J. (2002) Proc. Natl Acad. Sci. USA, 99, 12681-12684.
31. Choi, K. M. and Brimacombe, R. (1998) Nucl. Acids Res., 26, 887-895.
32. Nissen, P.; Hansen, J.; Ban, N.; Moore, P. B. and Steitz, T. A. (2000) Science, 289, 920-930.
33. Nakatogawa, H. and Ito, K. (2004) Chem. Biochem., 5, 48-51.
34. Hardesty, B. and Kramer, G. (2001) Prog. Nucleic Acid Res. Mol. Biol., 66, 41-66.
35. Kramer, G.; Rauch, T.; Rist, W.; Vorderwulbecke, S.; Patzelt, H.; Schulze-Specking, A.; Ban, N.; Deuerling, E. and Bukau, B. (2002) Nature, 419, 171-174.
36. Gu, S. Q.; Peske, F.; Wieden, H. J.; Rodnina, M. V. and Wintermeyer, W. (2003) RNA, 9, 566-573.
37. Duhamel, J.; Kanagalingam, S.; O'Brien, T. J. and Ingratta, M. W. (2003) J. Am. Chem. Soc., 125, 12810-12822.
38. Komar, A. A.; Kommer, A.; Krasheninnikov, I. A. and Spirin, A. S. (1997) J. Biol. Chem., 272, 10646-10651.
39. Krieger, F.; Fierz, B.; Bieri, O.; Drewello, M. and Kiefhaber, T. (2003) J. Mol. Biol., 332, 265-274.
40. Kippen, A.; Sancho, J. and Fersht, A. R. (1994) Biochemistry, 33, 3778-3786.
41. Kowarik, M.; Kung, S.; Martoglio, B. and Helenius, A. (2002) Mol. Cell, 10, 769-778.
42. Jennings, P. A. and Wright, P. E. (1993) Science, 262, 892-896.
43. Chow, C. C.; Chow, C.; Raghunathan, V.; Huppert, T. J.; Kimball, E. B. and Cavagnero, S. (2003) Biochemistry, 42, 7090-7099.
44. Frydman, J.; Erdjument-Bromage, H.; Tempst, P. and Hartl, F. U. (1999) Nat. Struct. Biol., 6, 697-705.
45. Dong, H.; Nilsson, L. and Kurland, C. G. (1996) J. Mol. Biol., 260, 649-663.
46. Elf, J.; Nilsson, D.; Tenson, T. and Ehrenberg, M. (2003) Science, 300, 1718-1722.
47. Akashi, H. (2003) Genetics, 164, 1291-1303.
48. Kane, J. F. (1995) Curr. Op. Biotechnol., 6, 494-500.
49. Moszer, I.; Rocha, E. P. and Danchin, A. (1999) Curr. Op. Microbiol., 2, 524-528.
50. Ramachandiran, V.; Kramer, G. and Hardesty, B. (2000) FEBS Lett., 482, 185-188.
51. Curran, J. F. and Yarus, M. (1989) J. Mol. Biol., 209, 65-77.
52. Sorensen, M. A. and Pedersen, S. (1991) J. Mol. Biol., 222, 265-280.
53. Sorensen, M. A.; Kurland, C. G. and Pedersen, S. (1989) J. Mol. Biol., 207, 365-377.
54. Duret, L. and Mouchiroud, D. (1999) Proc. Natl. Acad. Sci. USA, 96, 4482-4487.
55. Thanaraj, T. A. and Argos, P. (1996) Protein Sci., 5, 1973-1983.
56. Thanaraj, T. A. and Argos, P. (1996) Protein Sci., 5, 1594-1612.
57. Dessen, P. and Kepes, F. (2000) Gene, 244, 89-96.
58. Cortazzo, P.; Cervenansky, C.; Marin, M.; Reiss, C.; Ehrlich, R.; and Deana, A. (2002) Biochem. Biophys. Res. Commun., 293, 537-41.
59. Kim, K.; Cistola, D. P. and Frieden, C. (1996) Biochemistry, 35, 7553-7558.
60. Komar, A. A.; Lesnik, T. and Reiss, C. (1999) FEBS Lett., 462, 387-391.
61. Walter, P. and Johnson, A. E. (1994) Ann. Rev. Cell Biol., 10, 87-119.
62. Cao, J. and Geballe, A. P. (1996) Mol. Cell Biol., 16, 7109-7114.
63. Cao, J. and Geballe, A. P. (1998) RNA, 4, 181-188.
64. Wang, Z.; Fang, P. and Sachs, M. S. (1998) Mol. Cell Biol., 18, 7528-7536.
65. Nakatogawa, H. and Ito, K. (2002) Cell, 108, 629-636.
66. Gong, F. and Yanofsky, C. (2002) Science, 297, 1864-1867.
67. Tenson, T. and Ehrenberg, M. (2002) Cell, 108, 591-594.
68. Eaglestone, S. S.; Cox, B. S. and Tuite, M. F. (1999) EMBO J., 18, 1974-1981.
69. Clark, P. L. and King, J. (2001) J. Biol. Chem., 276, 25411-25420.
70. Netzer, W. J. and Hartl, F. U. (1997) Nature, 388, 343-349.
71. Nicola, A. V.; Chen, W. and Helenius, A. (1999) Nat. Cell Biol., 1, 341-345.
72. Kolb, V. A.; Makeyev, E. V. and Spirin, A. S. (2000) J. Biol. Chem., 275, 16597-16601.
73. Kudlicki, W.; Chirgwin, J.; Kramer, G. and Hardesty, B. (1995) Biochemistry, 34, 14284-14287.
74. Goldenberg, D. and King, J. (1982) Proc. Natl Acad. Sci. USA, 79, 3403-3407.