-
1
-
-
0037781843
-
Substrate specificity of the nonribosomal peptide synthetase PvdD from Pseudomonas aeruginosa
-
Ackerley, D. F., T. T. Caradoc-Davies, and I. L. Lamont. 2003. Substrate specificity of the nonribosomal peptide synthetase PvdD from Pseudomonas aeruginosa. J. Bacteriol. 185:2848-2855.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2848-2855
-
-
Ackerley, D.F.1
Caradoc-Davies, T.T.2
Lamont, I.L.3
-
2
-
-
3342921823
-
Characterization and genetic manipulation of peptide synthetases in Pseudomonas aeruginosa PAO1 in order to generate novel pyoverdines
-
Ackerley, D. F., and I. L. Lamont. 2004. Characterization and genetic manipulation of peptide synthetases in Pseudomonas aeruginosa PAO1 in order to generate novel pyoverdines. Chem. Biol. 11:971-980.
-
(2004)
Chem. Biol.
, vol.11
, pp. 971-980
-
-
Ackerley, D.F.1
Lamont, I.L.2
-
4
-
-
0042208362
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
-
Anisimova, M., R. Nielsen, and Z. Yang. 2003. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164:1229-1236.
-
(2003)
Genetics
, vol.164
, pp. 1229-1236
-
-
Anisimova, M.1
Nielsen, R.2
Yang, Z.3
-
5
-
-
1642300392
-
Sequence polymorphism in the glycosylation island and flagellins of Pseudomonas aeruginosa
-
Arora, S. K., M. C. Wolfgang, S. Lory, and R. Ramphal. 2004. Sequence polymorphism in the glycosylation island And flagellins of Pseudomonas aeruginosa. J. Bacteriol. 186:2115-2122.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2115-2122
-
-
Arora, S.K.1
Wolfgang, M.C.2
Lory, S.3
Ramphal, R.4
-
6
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., L. Coin, R. Durbin, R. D. Finn, V. Hollich, S. Griffiths-Jones, A. Khanna, M. Marshall, S. Moxon, E. L. Sonnhammer, D. J. Studholme, C. Yeats, and S. R. Eddy. 2004. The Pfam protein families database. Nucleic Acids Res. 32:D138-D141.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
7
-
-
0033020220
-
Uptake of pyocin S3 occurs through the outer membrane ferripyoverdine type II receptor of Pseudomonas aeruginosa
-
Baysse, C., J. M. Meyer, P. Plesiat, V. Geoffroy, Y. Michel-Briand, and P. Cornelis. 1999. Uptake of pyocin S3 occurs through the outer membrane ferripyoverdine type II receptor of Pseudomonas aeruginosa. J. Bacteriol. 181:3849-3851.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3849-3851
-
-
Baysse, C.1
Meyer, J.M.2
Plesiat, P.3
Geoffroy, V.4
Michel-Briand, Y.5
Cornelis, P.6
-
8
-
-
0032900438
-
Crystal structure of the outer membrane active transporter FepA from Escherichia coli
-
Buchanan, S. K., B. S. Smith, L. Venkatramani, D. Xia, L. Esser, M. Palnitkar, R. Chakraborty, D. van der Helm, and J. Deisenhofer. 1999. Crystal structure of the outer membrane active transporter FepA from Escherichia coli. Nat. Struct. Biol. 6:56-63.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 56-63
-
-
Buchanan, S.K.1
Smith, B.S.2
Venkatramani, L.3
Xia, D.4
Esser, L.5
Palnitkar, M.6
Chakraborty, R.7
Van Der Helm, D.8
Deisenhofer, J.9
-
9
-
-
0000803119
-
A disease of grasshoppers caused by the bacterium Pseudomonas aeruginosa (Schroeter) Migula
-
Bucher, G. E., and J. M. Stephens. 1957. A disease of grasshoppers caused by the bacterium Pseudomonas aeruginosa (Schroeter) Migula. Can. J. Microbiol. 3:611-625.
-
(1957)
Can. J. Microbiol.
, vol.3
, pp. 611-625
-
-
Bucher, G.E.1
Stephens, J.M.2
-
10
-
-
0027154740
-
Secondary metabolites from fluorescent pseudomonads
-
Budzikiewicz, H. 1993. Secondary metabolites from fluorescent pseudomonads. FEMS Microbiol. Rev. 10:209-228.
-
(1993)
FEMS Microbiol. Rev.
, vol.10
, pp. 209-228
-
-
Budzikiewicz, H.1
-
11
-
-
0041335630
-
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
-
Buell, C. R., V. Joardar, M. Lindeberg, J. Selengut, I. T. Paulsen, M. L. Gwinn, R. J. Dodson, R. T. Deboy, A. S. Durkin, J. F. Kolonay, R. Madupu, S. Daugherty, L. Brinkac, M. J. Beanan, D. H. Haft, W. C. Nelson, T. Davidsen, N. Zafar, L. Zhou, J. Liu, Q. Yuan, H. Khouri, N. Fedorova, B. Tran, D. Russell, K. Berry, T. Utterback, S. E. Van Aken, T. V. Feldblyum, M. D'Ascenzo, W. L. Deng, A. R. Ramos, J. R. Alfano, S. Cartinhour, A. K. Chatterjee, T. P. Delaney, S. G. Lazarowitz, G. B. Martin, D. J. Schneider, X. Tang, C. L. Bender, O. White, C. M. Fraser, and A. Collmer. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 100:10181-10186.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10181-10186
-
-
Buell, C.R.1
Joardar, V.2
Lindeberg, M.3
Selengut, J.4
Paulsen, I.T.5
Gwinn, M.L.6
Dodson, R.J.7
Deboy, R.T.8
Durkin, A.S.9
Kolonay, J.F.10
Madupu, R.11
Daugherty, S.12
Brinkac, L.13
Beanan, M.J.14
Haft, D.H.15
Nelson, W.C.16
Davidsen, T.17
Zafar, N.18
Zhou, L.19
Liu, J.20
Yuan, Q.21
Khouri, H.22
Fedorova, N.23
Tran, B.24
Russell, D.25
Berry, K.26
Utterback, T.27
Van Aken, S.E.28
Feldblyum, T.V.29
D'Ascenzo, M.30
Deng, W.L.31
Ramos, A.R.32
Alfano, J.R.33
Cartinhour, S.34
Chatterjee, A.K.35
Delaney, T.P.36
Lazarowitz, S.G.37
Martin, G.B.38
Schneider, D.J.39
Tang, X.40
Bender, C.L.41
White, O.42
Fraser, C.M.43
Collmer, A.44
more..
-
12
-
-
0035253464
-
Longitudinal assessment of Pseudomonas aeruginosa in young children with cystic fibrosis
-
Burns, J. L., R. L. Gibson, S. McNamara, D. Yim, J. Emerson, M. Rosenfeld, P. Hiatt, K. McCoy, R. Castile, A. L. Smith, and B. W. Ramsey. 2001. Longitudinal assessment of Pseudomonas aeruginosa in young children with cystic fibrosis. J. Infect. Dis. 183:444-452.
-
(2001)
J. Infect. Dis.
, vol.183
, pp. 444-452
-
-
Burns, J.L.1
Gibson, R.L.2
McNamara, S.3
Yim, D.4
Emerson, J.5
Rosenfeld, M.6
Hiatt, P.7
McCoy, K.8
Castile, R.9
Smith, A.L.10
Ramsey, B.W.11
-
13
-
-
0034013269
-
Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains
-
Challis, G. L., J. Ravel, and C. A. Townsend. 2000. Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains. Chem. Biol. 7:211-224.
-
(2000)
Chem. Biol.
, vol.7
, pp. 211-224
-
-
Challis, G.L.1
Ravel, J.2
Townsend, C.A.3
-
14
-
-
0024457839
-
Evidence for different pyoverdine-mediated iron uptake systems among Pseudomonas aeruginosa strains
-
Cornelis, P., D. Hohnadel, and J. M. Meyer. 1989. Evidence for different pyoverdine-mediated iron uptake systems among Pseudomonas aeruginosa strains. Infect. Immun. 57:3491-3497.
-
(1989)
Infect. Immun.
, vol.57
, pp. 3491-3497
-
-
Cornelis, P.1
Hohnadel, D.2
Meyer, J.M.3
-
15
-
-
0036942204
-
Diversity of siderophore-mediated iron uptake systems in fluorescent pseudomonads: Not only pyoverdines
-
Cornelis, P., and S. Matthijs. 2002. Diversity of siderophore-mediated iron uptake systems in fluorescent pseudomonads: not only pyoverdines. Environ. Microbiol.. 4:787-798.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 787-798
-
-
Cornelis, P.1
Matthijs, S.2
-
16
-
-
0033592926
-
Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa
-
Darby, C., C. L. Cosma, J. H. Thomas, and C. Manoil. 1999. Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 96:15202-15207.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 15202-15207
-
-
Darby, C.1
Cosma, C.L.2
Thomas, J.H.3
Manoil, C.4
-
17
-
-
0038076006
-
Identification of type II and type III pyoverdine receptors from Pseudomonas aeruginosa
-
de Chial, M., B. Ghysels, S. A. Beatson, V. Geoffroy, J. M. Meyer, T. Pattery, C. Baysse, P. Chablain, Y. N. Parsons, C. Winstanley, S. J. Cordwell, and P. Cornelis. 2003. Identification of type II and type III pyoverdine receptors from Pseudomonas aeruginosa. Microbiology 149:521-831.
-
(2003)
Microbiology
, vol.149
, pp. 521-831
-
-
De Chial, M.1
Ghysels, B.2
Beatson, S.A.3
Geoffroy, V.4
Meyer, J.M.5
Pattery, T.6
Baysse, C.7
Chablain, P.8
Parsons, Y.N.9
Winstanley, C.10
Cordwell, S.J.11
Cornelis, P.12
-
18
-
-
0003437299
-
-
distributed by the author. Department of Genome Sciences, University of Washington, Seattle, Wash.
-
Felsenstein, J. 1993. PHYLIP (phylogeny inference package) version 3.5c, distributed by the author. Department of Genome Sciences, University of Washington, Seattle, Wash..
-
(1993)
PHYLIP (Phylogeny Inference Package) Version 3.5c
-
-
Felsenstein, J.1
-
19
-
-
0036500658
-
Structural basis of gating by the outer membrane transporter FecA
-
Ferguson, A. D., R. Chakraborty, B. S. Smith, L. Esser, D. van der Helm, and J. Deisenhofer. 2002. Structural basis of gating by the outer membrane transporter FecA. Science 295:1715-1719.
-
(2002)
Science
, vol.295
, pp. 1715-1719
-
-
Ferguson, A.D.1
Chakraborty, R.2
Smith, B.S.3
Esser, L.4
Van Der Helm, D.5
Deisenhofer, J.6
-
20
-
-
0032545324
-
Siderophore-mediated iron transport: Crystal structure of FhuA with bound lipopolysaccharide
-
Ferguson, A. D., E. Hofmann, J. W. Coulton, K. Diederichs, and W. Welte. 1998. Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide. Science 282:2215-2220.
-
(1998)
Science
, vol.282
, pp. 2215-2220
-
-
Ferguson, A.D.1
Hofmann, E.2
Coulton, J.W.3
Diederichs, K.4
Welte, W.5
-
21
-
-
3142716025
-
FpvB, an alternative type I ferripyoverdine receptor of Pseudomonas aeruginosa
-
Ghysels, B., B. T. Dieu, S. A. Beatson, J. P. Pirnay, U. A. Ochsner, M. L. Vasil, and P. Cornelis. 2004. FpvB, an alternative type I ferripyoverdine receptor of Pseudomonas aeruginosa. Microbiology 150:1671-1680.
-
(2004)
Microbiology
, vol.150
, pp. 1671-1680
-
-
Ghysels, B.1
Dieu, B.T.2
Beatson, S.A.3
Pirnay, J.P.4
Ochsner, U.A.5
Vasil, M.L.6
Cornelis, P.7
-
22
-
-
0035054380
-
Automated finishing with autofinish
-
Gordon, D., C. Desmarais, and P. Green. 2001. Automated finishing with autofinish. Genome Res. 11:614-625.
-
(2001)
Genome Res.
, vol.11
, pp. 614-625
-
-
Gordon, D.1
Desmarais, C.2
Green, P.3
-
23
-
-
4344605134
-
Cooperation and competition in pathogenic bacteria
-
Griffin, A. S., S. A. West, and A. Buckling. 2004. Cooperation and competition in pathogenic bacteria. Nature 430:1024-1027.
-
(2004)
Nature
, vol.430
, pp. 1024-1027
-
-
Griffin, A.S.1
West, S.A.2
Buckling, A.3
-
24
-
-
0026038362
-
Plasmid transformation of Escherichia coli and other bacteria
-
Hanahan, D., J. Jessee, and F. R. Bloom. 1991. Plasmid transformation of Escherichia coli and other bacteria. Methods Enzymol. 204:63-113.
-
(1991)
Methods Enzymol.
, vol.204
, pp. 63-113
-
-
Hanahan, D.1
Jessee, J.2
Bloom, F.R.3
-
25
-
-
10744225048
-
The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes
-
He, J., R. L. Baldini, E. Deziel, M. Saucier, Q. Zhang, N. T. Liberati, D. Lee, J. Urbach, H. M. Goodman, and L. G. Rahme. 2004. The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc. Natl. Acad. Sci. USA 101:2530-2535.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 2530-2535
-
-
He, J.1
Baldini, R.L.2
Deziel, E.3
Saucier, M.4
Zhang, Q.5
Liberati, N.T.6
Lee, D.7
Urbach, J.8
Goodman, H.M.9
Rahme, L.G.10
-
26
-
-
0023481280
-
A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli
-
Hoffman, C. S., and F. Winston. 1987. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267-272.
-
(1987)
Gene
, vol.57
, pp. 267-272
-
-
Hoffman, C.S.1
Winston, F.2
-
27
-
-
0028028028
-
Computational DNA sequence analysis
-
Karlin, S., and L. R. Cardon. 1994. Computational DNA sequence analysis. Annu. Rev. Microbiol.. 48:619-654.
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 619-654
-
-
Karlin, S.1
Cardon, L.R.2
-
28
-
-
0034076694
-
Sequence diversity of Pseudomonas aeruginosa: Impact on population structure and genome evolution
-
Kiewitz, C., and B. Tummler. 2000. Sequence diversity of Pseudomonas aeruginosa: impact on population structure and genome evolution. J. Bacteriol. 182:3125-3135.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 3125-3135
-
-
Kiewitz, C.1
Tummler, B.2
-
29
-
-
0036856331
-
TonB of Escherichia coli activates FhuA through interaction with the beta-barrel
-
Killmann, H., C. Herrmann, A. Torun, G. Jung, and V. Braun. 2002. TonB of Escherichia coli activates FhuA through interaction with the beta-barrel. Microbiology 148:3497-3509.
-
(2002)
Microbiology
, vol.148
, pp. 3497-3509
-
-
Killmann, H.1
Herrmann, C.2
Torun, A.3
Jung, G.4
Braun, V.5
-
30
-
-
0026594245
-
Stable propagation of cosmid sized human DNA inserts in an F factor based vector
-
Kim, U. J., H. Shizuya, P. J. de Jong, B. Birren, and M. I. Simon. 1992. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20:1083-1085.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1083-1085
-
-
Kim, U.J.1
Shizuya, H.2
De Jong, P.J.3
Birren, B.4
Simon, M.I.5
-
31
-
-
0347285389
-
Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
-
Klockgether, J., O. Reva, K. Larbig, and B. Tummler. 2004. Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J. Bacteriol. 186:518-534.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 518-534
-
-
Klockgether, J.1
Reva, O.2
Larbig, K.3
Tummler, B.4
-
32
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
33
-
-
0036889019
-
Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone
-
Larbig, K. D., A. Christmann, A. Johann, J. Klockgether, T. Hartsch, R. Merkl, L. Wiehlmann, H. J. Fritz, and B. Tummler. 2002. Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone. J. Bacteriol. 184:6665-6680.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6665-6680
-
-
Larbig, K.D.1
Christmann, A.2
Johann, A.3
Klockgether, J.4
Hartsch, T.5
Merkl, R.6
Wiehlmann, L.7
Fritz, H.J.8
Tummler, B.9
-
34
-
-
0035148906
-
Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa
-
Liang, X., X. Q. Pham, M. V. Olson, and S. Lory. 2001. Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa. J. Bacteriol. 183:843-853.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 843-853
-
-
Liang, X.1
Pham, X.Q.2
Olson, M.V.3
Lory, S.4
-
35
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
Lukashin, A. V., and M. Borodovsky. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
36
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
Marchler-Bauer, A., J. B. Anderson, C. DeWeese-Scott, N. D. Fedorora, L. Y. Geer, S. He, D. I. Hurwitz, J. D. Jackson, A. R. Jacobs, C. J. Lanczycki, C. A. Liebert, C. Liu, T. Madej, G. H. Marchler, R. Mazumder, A. N. Nikolskaya, A. R. Panchenko, B. S. Rao, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, S. Vasudevan, Y. Wang, R. A. Yamashita, J. J. Yin, and S. H. Bryant. 2003. CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31:383-387.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
DeWeese-Scott, C.3
Fedorora, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
Liebert, C.A.11
Liu, C.12
Madej, T.13
Marchler, G.H.14
Mazumder, R.15
Nikolskaya, A.N.16
Panchenko, A.R.17
Rao, B.S.18
Shoemaker, B.A.19
Simonyan, V.20
Song, J.S.21
Thiessen, P.A.22
Vasudevan, S.23
Wang, Y.24
Yamashita, R.A.25
Yin, J.J.26
Bryant, S.H.27
more..
-
37
-
-
0033626325
-
Pyoverdines: Pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species
-
Meyer, J. M. 2000. Pyoverdines: pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species. Arch. Microbiol.. 174:135-142.
-
(2000)
Arch. Microbiol.
, vol.174
, pp. 135-142
-
-
Meyer, J.M.1
-
38
-
-
0037082104
-
Siderophore-mediated iron uptake in fluorescent Pseudomonas: Characterization of the pyoverdine-receptor binding site of three cross-reacting pyoverdines
-
Meyer, J. M., V. A. Geoffroy, C. Baysse, P. Cornelis, I. Barelmann, K. Taraz, and H. Budzikiewicz. 2002. Siderophore-mediated iron uptake in fluorescent Pseudomonas: characterization of the pyoverdine-receptor binding site of three cross-reacting pyoverdines. Arch. Biochem. Biophys. 397:179-183.
-
(2002)
Arch. Biochem. Biophys.
, vol.397
, pp. 179-183
-
-
Meyer, J.M.1
Geoffroy, V.A.2
Baysse, C.3
Cornelis, P.4
Barelmann, I.5
Taraz, K.6
Budzikiewicz, H.7
-
39
-
-
0030033830
-
Pyoverdin is essential for virulence of Pseudomonas aeruginosa
-
Meyer, J. M., A. Neely, A. Stintzi, C. Georges, and I. A. Holder. 1996. Pyoverdin is essential for virulence of Pseudomonas aeruginosa. Infect. Immun. 64:518-523.
-
(1996)
Infect. Immun.
, vol.64
, pp. 518-523
-
-
Meyer, J.M.1
Neely, A.2
Stintzi, A.3
Georges, C.4
Holder, I.A.5
-
40
-
-
0031026355
-
Use of siderophores to type pseudomonads: The three Pseudomonas aeruginosa pyoverdine systems
-
Meyer, J. M., A. Stintzi, D. De Vos, P. Cornelis, R. Tappe, K. Taraz, and H. Budzikiewicz. 1997. Use of siderophores to type pseudomonads: the three Pseudomonas aeruginosa pyoverdine systems. Microbiology 143:35-43.
-
(1997)
Microbiology
, vol.143
, pp. 35-43
-
-
Meyer, J.M.1
Stintzi, A.2
De Vos, D.3
Cornelis, P.4
Tappe, R.5
Taraz, K.6
Budzikiewicz, H.7
-
41
-
-
0032901355
-
The ferripyoverdine receptor FpvA of Pseudomonas aeruginosa PAO1 recognizes the ferripyoverdines of P. aeruginosa PAO1 and P. fluorescens ATCC13525
-
Meyer, J. M., A. Stintzi, and K. Poole. 1999. The ferripyoverdine receptor FpvA of Pseudomonas aeruginosa PAO1 recognizes the ferripyoverdines of P. aeruginosa PAO1 and P. fluorescens ATCC13525. FEMS Microbiol. Lett. 170:145-150.
-
(1999)
FEMS Microbiol. Lett.
, vol.170
, pp. 145-150
-
-
Meyer, J.M.1
Stintzi, A.2
Poole, K.3
-
42
-
-
0036905773
-
Ways of assembling complex natural products on modular nonribosomal peptide synthetases
-
Mootz, H. D., D. Schwarzer, and M. A. Marahiel. 2002. Ways of assembling complex natural products on modular nonribosomal peptide synthetases. Chembiochem 3:490-504.
-
(2002)
Chembiochem
, vol.3
, pp. 490-504
-
-
Mootz, H.D.1
Schwarzer, D.2
Marahiel, M.A.3
-
43
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440, Environ. Microbiol.. 4:799-808.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 799-808
-
-
Nelson, K.E.1
Weinel, C.2
Paulsen, I.T.3
Dodson, R.J.4
Hilbert, H.5
Martins Dos Santos, V.A.6
Fouts, D.E.7
Gill, S.R.8
Pop, M.9
Holmes, M.10
Brinkac, L.11
Beanan, M.12
DeBoy, R.T.13
Daugherty, S.14
Kolonay, J.15
Madupu, R.16
Nelson, W.17
White, O.18
Peterson, J.19
Khouri, H.20
Hance, I.21
Chris Lee, P.22
Holtzapple, E.23
Scanlan, D.24
Tran, K.25
Moazzez, A.26
Utterback, T.27
Rizzo, M.28
Lee, K.29
Kosack, D.30
Moestl, D.31
Wedler, H.32
Lauber, J.33
Stjepandic, D.34
Hoheisel, J.35
Straetz, M.36
Heim, S.37
Kiewitz, C.38
Eisen, J.A.39
Timmis, K.N.40
Dusterhoft, A.41
Tummler, B.42
Fraser, C.M.43
more..
-
44
-
-
0035982906
-
Gene-Chip expression analysis of the iron starvation response in Pseudomonas aeruginosa: Identification of novel pyoverdine biosynthesis genes
-
Ochsner, U. A., P. J. Wilderman, A. I. Vasil, and M. L. Vasil. 2002. Gene-Chip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes. Mol. Microbiol.. 45:1277-1287.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 1277-1287
-
-
Ochsner, U.A.1
Wilderman, P.J.2
Vasil, A.I.3
Vasil, M.L.4
-
45
-
-
0030873221
-
Recombination-mediated PCR-directed plasmid construction in vivo in yeast
-
Oldenburg, K. R., K. T. Vo, S. Michaelis, and C. Paddon. 1997. Recombination-mediated PCR-directed plasmid construction in vivo in yeast. Nucleic Acids Res. 25:451-452.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 451-452
-
-
Oldenburg, K.R.1
Vo, K.T.2
Michaelis, S.3
Paddon, C.4
-
46
-
-
0033933636
-
Cascaded multiple classifiers for secondary structure prediction
-
Ouali, M., and R. D. King. 2000. Cascaded multiple classifiers for secondary structure prediction. Protein Sci. 9:1162-1176.
-
(2000)
Protein Sci.
, vol.9
, pp. 1162-1176
-
-
Ouali, M.1
King, R.D.2
-
47
-
-
0036933708
-
Pseudomonas aeruginosa displays an epidemic population structure
-
Pirnay, J. P., D. De Vos, C. Cochez, F. Bilocq, A. Vanderkelen, M. Zizi, B. Ghysels, and P. Cornelis. 2002. Pseudomonas aeruginosa displays an epidemic population structure. Environ. Microbiol.. 4:898-911.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 898-911
-
-
Pirnay, J.P.1
De Vos, D.2
Cochez, C.3
Bilocq, F.4
Vanderkelen, A.5
Zizi, M.6
Ghysels, B.7
Cornelis, P.8
-
48
-
-
0034527071
-
Pathogenesis of the human opportunistic pathogen Pseudomonas aeruginosa PA14 in Arabidopsis
-
Plotnikova, J. M., L. G. Rahme, and F. M. Ausubel. 2000. Pathogenesis of the human opportunistic pathogen Pseudomonas aeruginosa PA14 in Arabidopsis. Plant Physiol. 124:1766-1774.
-
(2000)
Plant Physiol.
, vol.124
, pp. 1766-1774
-
-
Plotnikova, J.M.1
Rahme, L.G.2
Ausubel, F.M.3
-
49
-
-
0346636767
-
Iron acquisition and its control in Pseudomonas aeruginosa: Many roads lead to Rome
-
Poole, K., and G. A. McKay. 2003. Iron acquisition and its control in Pseudomonas aeruginosa: many roads lead to Rome. Front. Biosci. 8:d661-d686.
-
(2003)
Front. Biosci.
, vol.8
-
-
Poole, K.1
McKay, G.A.2
-
50
-
-
0027203781
-
Cloning and nucleotide sequence analysis of the ferripyoverdine receptor gene fpvA of Pseudomonas aeruginosa
-
Poole, K., S. Neshat, K. Krebes, and D. E. Heinrichs. 1993. Cloning and nucleotide sequence analysis of the ferripyoverdine receptor gene fpvA of Pseudomonas aeruginosa. J. Bacteriol. 175:4597-4604.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4597-4604
-
-
Poole, K.1
Neshat, S.2
Krebes, K.3
Heinrichs, D.E.4
-
51
-
-
0037315735
-
Evolutionary implications of microbial genome tetranucleotide frequency biases
-
Pride, D. T., R. J. Meinersmann, T. M. Wassenaar, and M. J. Blaser. 2003. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 13:145-158.
-
(2003)
Genome Res.
, vol.13
, pp. 145-158
-
-
Pride, D.T.1
Meinersmann, R.J.2
Wassenaar, T.M.3
Blaser, M.J.4
-
52
-
-
0037022589
-
The human pathogen Pseudomonas aeruginosa utilizes conserved virulence pathways to infect the social amoeba Dictyostelium discoideum
-
Pukatzki, S., R. H. Kessin, and J. J. Mekalanos. 2002. The human pathogen Pseudomonas aeruginosa utilizes conserved virulence pathways to infect the social amoeba Dictyostelium discoideum. Proc. Natl. Acad. Sci. USA 99:3159-3164.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3159-3164
-
-
Pukatzki, S.1
Kessin, R.H.2
Mekalanos, J.J.3
-
53
-
-
0029035765
-
Common virulence factors for bacterial pathogenicity in plants and animals
-
Rahme, L. G., E. J. Stevens, S. F. Wolfort, J. Shao, R. G. Tompkins, and F. M. Ausubel. 1995. Common virulence factors for bacterial pathogenicity in plants and animals. Science 268:1899-1902.
-
(1995)
Science
, vol.268
, pp. 1899-1902
-
-
Rahme, L.G.1
Stevens, E.J.2
Wolfort, S.F.3
Shao, J.4
Tompkins, R.G.5
Ausubel, F.M.6
-
54
-
-
0033759220
-
Iron metabolism in pathogenic bacteria
-
Ratledge, C., and L. G. Dover. 2000. Iron metabolism in pathogenic bacteria. Annu. Rev. Microbiol.. 54:881-941.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 881-941
-
-
Ratledge, C.1
Dover, L.G.2
-
55
-
-
0038689220
-
Genomics of pyoverdine-mediated iron uptake in pseudomonads
-
Ravel, J., and P. Cornelis. 2003. Genomics of pyoverdine-mediated iron uptake in pseudomonads. Trends Microbiol.. 11:195-200.
-
(2003)
Trends Microbiol.
, vol.11
, pp. 195-200
-
-
Ravel, J.1
Cornelis, P.2
-
56
-
-
0036283567
-
Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa
-
Raymond, C. K., E. H. Sims, A. Kas, D. H. Spencer, T. V. Kutyavin, R. G. Ivey, Y. Zhou, R. Kaul, J. B. Clendenning, and M. V. Olson. 2002. Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa. J. Bacteriol. 184:3614-3622.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3614-3622
-
-
Raymond, C.K.1
Sims, E.H.2
Kas, A.3
Spencer, D.H.4
Kutyavin, T.V.5
Ivey, R.G.6
Zhou, Y.7
Kaul, R.8
Clendenning, J.B.9
Olson, M.V.10
-
57
-
-
0036144866
-
Linker-mediated recombinational subcloning of large DNA fragments using yeast
-
Raymond, C. K., E. H. Sims, and M. V. Olson. 2002. Linker-mediated recombinational subcloning of large DNA fragments using yeast. Genome Res. 12:190-197.
-
(2002)
Genome Res.
, vol.12
, pp. 190-197
-
-
Raymond, C.K.1
Sims, E.H.2
Olson, M.V.3
-
58
-
-
0034201441
-
EMBOSS: The European Molecular Biology open software suite
-
Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European Molecular Biology open software suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
59
-
-
0032526323
-
Oligonucleotide bias in Bacillus subtilis: General trends and taxonomic comparisons
-
Rocha, E. P., A. Viari, and A. Danchin. 1998. Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons. Nucleic Acids Res. 26:2971-2980.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2971-2980
-
-
Rocha, E.P.1
Viari, A.2
Danchin, A.3
-
60
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen, S., and H. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132:365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
61
-
-
0035706362
-
A new pyoverdin from Pseudomonas aeruginosa R'
-
Ruangviriyachai, C., D. U. Fernandez, R. Fuchs, J. M. Meyer, and H. Budzikiewicz. 2001. A new pyoverdin from Pseudomonas aeruginosa R'. Z. Naturforsch. C 56:933-938.
-
(2001)
Z. Naturforsch. C
, vol.56
, pp. 933-938
-
-
Ruangviriyachai, C.1
Fernandez, D.U.2
Fuchs, R.3
Meyer, J.M.4
Budzikiewicz, H.5
-
62
-
-
0023650543
-
The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
-
Sharp, P. M., and W. H. Li. 1987. The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15:1281-1295.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 1281-1295
-
-
Sharp, P.M.1
Li, W.H.2
-
63
-
-
0025978949
-
Getting started with yeast
-
Sherman, F. 1991. Getting started with yeast. Methods Enzymol. 194:3-21.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 3-21
-
-
Sherman, F.1
-
64
-
-
0037315058
-
Whole-genome sequence variation among multiple isolates of Pseudomonas aeruginosa
-
Spencer, D. H., A. Kas, E. E. Smith, C. K. Raymond, E. H. Sims, M. Hastings, J. L. Burns, R. Kaul, and M. V. Olson. 2003. Whole-genome sequence variation among multiple isolates of Pseudomonas aeruginosa. J. Bacteriol. 185:1316-1325.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1316-1325
-
-
Spencer, D.H.1
Kas, A.2
Smith, E.E.3
Raymond, C.K.4
Sims, E.H.5
Hastings, M.6
Burns, J.L.7
Kaul, R.8
Olson, M.V.9
-
65
-
-
0034739007
-
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
-
Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Mickey, F. S. Brinkman, W. O. Hufhagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406: 959-964.
-
(2000)
Nature
, vol.406
, pp. 959-964
-
-
Stover, C.K.1
Pham, X.Q.2
Erwin, A.L.3
Mizoguchi, S.D.4
Warrener, P.5
Mickey, M.J.6
Brinkman, F.S.7
Hufhagle, W.O.8
Kowalik, D.J.9
Lagrou, M.10
Garber, R.L.11
Goltry, L.12
Tolentino, E.13
Westbrock-Wadman, S.14
Yuan, Y.15
Brody, L.L.16
Coulter, S.N.17
Folger, K.R.18
Kas, A.19
Larbig, K.20
Lim, R.21
Smith, K.22
Spencer, D.23
Wong, G.K.24
Wu, Z.25
Paulsen, I.T.26
Reizer, J.27
Saier, M.H.28
Hancock, R.E.29
Lory, S.30
Olson, M.V.31
more..
-
66
-
-
0034104386
-
Impact of siderophore production on Pseudomonas aeruginosa infections in immunosuppressed mice
-
Takase, H., H. Nitanai, K. Hoshino, and T. Otani. 2000. Impact of siderophore production on Pseudomonas aeruginosa infections in immunosuppressed mice. Infect. Immun. 68:1834-1839.
-
(2000)
Infect. Immun.
, vol.68
, pp. 1834-1839
-
-
Takase, H.1
Nitanai, H.2
Hoshino, K.3
Otani, T.4
-
67
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
68
-
-
0032704951
-
The response of Pseudomonas aeruginosa to iron: Genetics, biochemistry and virulence
-
Vasil, M. L., and U. A. Ochsner. 1999. The response of Pseudomonas aeruginosa to iron: genetics, biochemistry and virulence. Mol. Microbiol.. 34:399-413.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 399-413
-
-
Vasil, M.L.1
Ochsner, U.A.2
-
69
-
-
0036046297
-
Iron transport and regulation, cell signalling and genomics: Lessons from Escherichia coli and Pseudomonas
-
Visca, P., L. Leoni, M. J. Wilson, and I. L. Lamont. 2002. Iron transport and regulation, cell signalling and genomics: lessons from Escherichia coli and Pseudomonas. Mol. Microbiol.. 45:1177-1190.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 1177-1190
-
-
Visca, P.1
Leoni, L.2
Wilson, M.J.3
Lamont, I.L.4
-
70
-
-
0037422723
-
Cooperation, virulence and siderophore production in bacterial parasites
-
West, S. A., and A. Buckling. 2003. Cooperation, virulence and siderophore production in bacterial parasites. Proc. R. Soc. Lond. B Biol. Sci. 270:37-44.
-
(2003)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.270
, pp. 37-44
-
-
West, S.A.1
Buckling, A.2
-
71
-
-
0030924693
-
Multiple-complete-digest restriction fragment mapping: Generating sequence-ready maps for large-scale DNA sequencing
-
Wong, G. K., J. Yu, E. C. Thayer, and M. V. Olson. 1997. Multiple-complete-digest restriction fragment mapping: generating sequence-ready maps for large-scale DNA sequencing. Proc. Natl. Acad. Sci. USA 94:5225-5230.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5225-5230
-
-
Wong, G.K.1
Yu, J.2
Thayer, E.C.3
Olson, M.V.4
-
72
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
73
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang, Z., R. Nielsen, N. Goldman, and A. M. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
|