Chicken genome sequence: A centennial gift to poultry genetics

Cytogenetic and Genome Research

Volumn 102, Issue 1-4, 2003, Pages 291-296

  Dodgson, J B ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ARTIFICIAL CHROMOSOME; CHICKEN; CLONE; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; GENETICS; GENOME; GENOME ANALYSIS; GENOMICS; INHERITANCE; NONHUMAN; POULTRY; PRIORITY JOURNAL; RADIATION HYBRID MAPPING; REVIEW;

ANIMALS; CHICKENS; GENOME; HUMANS; POULTRY; SEQUENCE ANALYSIS, DNA;

ANIMALIA; BACTERIA (MICROORGANISMS); GALLUS GALLUS;

EID: 1442323740     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000075765     Document Type: Review

References (43)

1. Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP: Gene expression during the life cycle of Drosophila melanogaster. Science 297: 2270-2275 (2002).
2. Bateson W: Experiments with poultry. Repts Evol Comm Roy Soc 1:87-124 (1902).
3. Bateson W, Punnett RC: Experimental studies in the physiology of heredity. Poultry Repts Evol Comm Roy Soc 2:99-119 (1905).
4. Bateson W, Punnett RC: Experimental studies in the physiology of heredity. Poultry Repts Evol Comm Roy Soc 3:11-30 (1906).
5. Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WRA, Wilson SA, Hubbard SJ: A comprehensive collection of chicken cDNAs. Curr Biol 12:1965-1969 (2002).
6. Brown WRA, Hubbard SJ, Tickle C, Wilson SA: The chicken as a model for large-scale analysis of vertebrate gene function. Nature Rev Genet 4:87-98 (2003).
7. Buerstedde JM, Takeda S: Increased ratio of targeted to random integration after transfection of chicken B cell lines. Cell 67:179-188 (1991).
8. Buitenhuis AJ, Crooijmans RPMA, Bruijnesteijn van Coppenraet ES, Veenendaal A, Groenen MAM, van der Poel JJ: Improvement of the comparative map of chicken chromosome 13. Anim Genet 33:249-254 (2002).
9. Burt DW, Bruley C, Dunn IC, Jones CT, Ramage A, Law AS, Morrice DR, Paton IR, Smith J, Windsor D, Sazanov A, Fries R, Waddington D: The dynamics of chromosome evolution in birds and mammals. Nature 402:411-413 (1999).
10. Burt DW, Pourquie O: Chicken genome: science nuggets to come soon. Science 300:1669 (2003).
11. Crooijmans RPMA, Vrebalov J, Dijkhof RJM, van der Poel JJ, Groenen MAM: Two-dimensional screening of the Wageningen chicken BAC library. Mammal Genome 11:360-363 (2000).
12. Crooijmans R, Dijkhof R, Aerts J, Hemmatien K, Cornelissen S, Veenendaal T, van der Poel J, Groenen M: A sequence ready BAC map of chicken chromosome 10, in: Proceedings of the Plant & Animal Genomes XI Conference, p 225 (abstract), San Diego, California (2003).
13. Göttgens B, Barton LM, Gilbert JG, Bench AJ, Sanchez MJ, Bahn S, Mistry S, Grafham D, McMurray A, Vaudin M et al: Analysis of vertebrate SCL loci identifies conserved enhancers. Nature Biotechnol 18:181-186 (2000).
14. Green ED: Strategies for the systematic sequencing of complex genomes. Nature Rev Genet 2:573-583 (2001).
15. Groenen MAM, Cheng HH, Bumstead N, Benkel B, Briles E, Burt DW, Burke T, Dodgson J, Hillel J, Lamont S et al: A consensus linkage map of the chicken genome. Genome Res 10:137-147 (2000).
16. Hamernik DL, Adelson DL: USDA stakeholder workshop on animal bioinformatics: summary and recommendations. Comp Funct Genom 4:271-274 (2003).
17. International Human Genome Sequencing Consortium: Initial sequencing and analysis of the human genome. Nature 409:860-921 (2001).
18. Ivarie R: Avian transgenesis: progress towards the promise. Trends Biotechnol 21:14-19 (2003).
19. Jennen DGJ, Crooijmans RPMA, Kamps B, Açar R, Veenendaal A, van der Poel JJ, Groenen MAM: A comparative map of chicken chromosome 24 and human chromosome 11. Anim Genet 33:205-210 (2002).
20. Lee MK, Ren CW, Yan B, Cox B, Zhang HB, Romanov MN, Sizemore FG, Suchyta SP, Peters E, Dodgson JB: Construction and characterization of three BAC libraries for analysis of the chicken genome. Anim Genet 34:151-152 (2003).
21. Lewis EB: A gene complex controlling segmentation in Drosophila. Nature 276:565-570 (1978).
22. Liu HC, Cheng HH, Tirunagaru V, Sofer L, Burnside J: A strategy to identify positional candidate genes conferring Marek's disease resistance by integrating DNA microarrays and genetic mapping. Anim Genet 32:351-359 (2001).
23. Margulies EH, Green ED: Extracting biological information from multi-species genomic sequence comparisons, in: Proceedings of the Advances in Genome Biology & Technology 2003 Meeting, p 72 (abstract), Marco Island, Florida (2003).
24. Min W, Lillehoj HS, Kim S, Zhu JJ, Beard H, Alkharouf N, Matthews BF: Profiling local gene expression changes associated with Eimeria maxima and Eimeria acervulina using cDNA microarray. Appl Microbiol Biotechnol, in press (2003).
25. Morgan TH, Goodale HD: Sex-linked inheritance in poultry. Ann New York Acad Sci 22:113-133 (1912).
26. Morisson M, Lemière A, Bosc S, Galan M, Plisson-Petit F, Pinton P, Delcros C, Fève K, Pitel F, Fillon V, et al: ChickRH6: a chicken whole-genome radiation hybrid panel. Genet Sel Evol 34:521-533 (2002).
27. Neiman PE, Ruddell A, Jasoni C, Loring G, Thomas SJ, Brandvold KA, Lee RM, Burnside J, Delrow J: Analysis of gene expression during myc oncogene-induced lymphomagenesis in the bursa of Fabricius. Proc natl Acad Sci, USA 98:6378-6383 (2001).
28. Neiman PE, Grbiç JJ, Polony TS, Kimmel R, Bowers SJ, Delrow J, Beemon KL: Functional genomic analysis reveals distinct neoplastic phenotypes associated with c-myb mutation in the bursa of Fabricius. Oncogene 22:1073-1086 (2003).
29. Okimoto R, Cheng HH, Dodgson JB: Characterization of CR1 repeat random PCR markers for mapping the chicken genome. Anim Genet 28:139-145 (1997).
30. Primmer CR, Raudsepp T, Chowdhary BP, Møller AP, Ellegren H: Low frequency of microsatellites in the avian genome. Genome Res 7:471-482 (1997).
31. Ren C, Lee MK, Yan B, Ding K, Cox B, Romanov MN, Price JA, Dodgson JB, Zhang HB: A BAC-based physical map of the chicken genome. Genome Res, in press.
32. Romanov MN, Price JA, Dodgson, JB: Integration of animal linkage and BAC contig maps using overgo hybridization. Cytogenet Genome Res 102:277-281 (2003).
33. Salter DW, Smith EJ, Hughes SH, Wright SE, Crittenden LB: Transgenic chickens: insertion of retroviral genes into the chicken germ line. Virology 157:236-240 (1987).
34. Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn M, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde JM, et al: First report on chicken genes and chromosomes 2000. Cytogenet Cell Genet 90:169-218 (2000).
35. Smyth JR Jr: Genetics of plumage, skin and eye pigmentation in chickens, in Crawford RD (ed): Poultry Breeding and Genetics, pp 109-167 (Elsevier, Amsterdam 1990).
36. Suchyta SP, Cheng HH, Burnside J, Dodgson JB: Comparative mapping of chicken anchor loci orthologous to genes on human chromosomes 1, 4 and 9. Animal Genet 32:12-18 (2001).
37. 2 intercross chickens. Genetics 148:349-360 (1998).
38. van Kaam JBCHM, Groenen MAM, Bovenhuis H, Veenendaal A, Vereijken ALJ, van Arendonk JAM: Whole genome scan in chickens for quantitative trait loci affecting growth and feed efficiency. Poultry Sci 78:15-23 (1999a).
39. van Kaam JBCHM, Groenen MAM, Bovenhuis H, Veenendaal A, Vereijken ALJ, van Arendonk JAM: Whole genome scan in chickens for quantitative trait loci affecting carcass traits. Poultry Sci 78:1091-1099 (1999b).
40. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, et al: The sequence of the human genome. Science 291:1304-1351 (2001).
41. Waddington D, Springbett AJ, Burt DW: A chromosome based model to estimate the number of conserved segments between pairs of species from comparative genetic maps. Genetics 154:323-332 (2000).
42. Warren DC: A half century of advances in the genetics and breeding improvement of poultry. Poultry Sci 37:3-20 (1958).
43. Yonash N, Bacon LD, Witter RL, Cheng HH: High resolution mapping and identification of new quantitative trait loci (QTL) affecting susceptibility to Marek's disease. Anim Genet 30:126-135 (1999).