-
1
-
-
0023032496
-
Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction
-
Fairall, L., Rhodes, D., and Klug, A. (1986) Mapping of the sites of protection on a 5 S RNA gene by the Xenopus transcription factor IIIA. A model for the interaction, J. Mol. Biol. 192, 557-591.
-
(1986)
J. Mol. Biol.
, vol.192
, pp. 557-591
-
-
Fairall, L.1
Rhodes, D.2
Klug, A.3
-
2
-
-
0023375317
-
Metal-dependent folding of a single zinc finger from transcription factor IIIA
-
Frankel, A. D., Berg, J. M., and Pabo, C. O. (1987) Metal-dependent folding of a single zinc finger from transcription factor IIIA, Proc. Natl. Acad. Sci. U.S.A. 84, 4841-4845.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 4841-4845
-
-
Frankel, A.D.1
Berg, J.M.2
Pabo, C.O.3
-
3
-
-
0033624684
-
DNA recognition by Cys2His2 zinc finger proteins
-
Wolfe, S. A., Nekludova, L., and Pabo, C. O. (2000) DNA recognition by Cys2His2 zinc finger proteins, Annu. Rev. Biophys. Biomol. Struct. 29, 183-212.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 183-212
-
-
Wolfe, S.A.1
Nekludova, L.2
Pabo, C.O.3
-
4
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
-
Pavletich, N. P., and Pabo, C. O. (1991) Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å, Science 252, 809-817.
-
(1991)
Science
, vol.252
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
5
-
-
0030587774
-
Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger-DNA interactions
-
Elrod-Erickson, M., Rould, M. A., Nekludova, L., and Pabo, C. O. (1996) Zif268 protein-DNA complex refined at 1.6 Å: a model system for understanding zinc finger-DNA interactions, Structure 4, 1171-1180.
-
(1996)
Structure
, vol.4
, pp. 1171-1180
-
-
Elrod-Erickson, M.1
Rould, M.A.2
Nekludova, L.3
Pabo, C.O.4
-
6
-
-
0026742626
-
Toward rules relating zinc finger protein sequences and DNA binding site preferences
-
Desjarlais, J. R., and Berg, J. M. (1992) Toward rules relating zinc finger protein sequences and DNA binding site preferences, Proc. Natl. Acad. Sci U.S.A. 89, 7345-7349.
-
(1992)
Proc. Natl. Acad. Sci U.S.A.
, vol.89
, pp. 7345-7349
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
7
-
-
0026571368
-
Redesigning the DNA-binding specificity of a zinc finger protein: A data base-guided approach
-
Desjarlais, J. R., and Berg, J. M. (1992) Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach, Proteins 12, 101-104.
-
(1992)
Proteins
, vol.12
, pp. 101-104
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
8
-
-
0026891516
-
Redesigning the DNA-binding specificity of a zinc finger protein: A data base-guided approach
-
Desjarlais, J. R., and Berg, J. M. (1992) Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach, Proteins 13, 272.
-
(1992)
Proteins
, vol.13
, pp. 272
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
9
-
-
0027401045
-
Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins
-
Desjarlais, J. R., and Berg, J. M. (1993) Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins, Proc. Natl. Acad. Sci. U.S.A. 90, 2256-2260.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 2256-2260
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
10
-
-
0037018930
-
Rational design of artificial zinc-finger proteins using a nondegenerate recognition code table
-
Sera, T., and Uranga, C. (2002) Rational design of artificial zinc-finger proteins using a nondegenerate recognition code table, Biochemistry 41, 7074-7081.
-
(2002)
Biochemistry
, vol.41
, pp. 7074-7081
-
-
Sera, T.1
Uranga, C.2
-
11
-
-
0037118709
-
Interconversion between serine and aspartic acid in the alpha helix of the N-terminal zinc finger of Sp1: Implication for general recognition code and for design of novel zinc finger peptide recognizing complementary strand
-
Nagaoka, M., Shiraishi, Y., Uno, Y., Nomura, W., and Sugiura, Y. (2002) Interconversion between serine and aspartic acid in the alpha helix of the N-terminal zinc finger of Sp1: implication for general recognition code and for design of novel zinc finger peptide recognizing complementary strand, Biochemistry 41, 8819-8825.
-
(2002)
Biochemistry
, vol.41
, pp. 8819-8825
-
-
Nagaoka, M.1
Shiraishi, Y.2
Uno, Y.3
Nomura, W.4
Sugiura, Y.5
-
12
-
-
0027994717
-
Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage
-
Choo, Y., and Klug, A. (1994) Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage, Proc. Natl. Acad. Sci. U.S.A. 91, 11163-11167.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11163-11167
-
-
Choo, Y.1
Klug, A.2
-
13
-
-
0028046895
-
Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
-
Choo, Y., and Klug, A. (1994) Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions, Proc. Natl. Acad. Sci. U.S.A. 91, 11168-11172.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11168-11172
-
-
Choo, Y.1
Klug, A.2
-
14
-
-
0031053362
-
A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
-
Greisman, H. A., and Pabo, C. O. (1997) A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites, Science 275, 657-661.
-
(1997)
Science
, vol.275
, pp. 657-661
-
-
Greisman, H.A.1
Pabo, C.O.2
-
15
-
-
0032981699
-
Toward controlling gene expression at will: Selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences
-
Segal, D. J., Dreier, B., Beerli, R. R., and Barbas, C. F., III. (1999) Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences, Proc. Natl. Acad. Sci. U.S.A. 96, 2758-2763.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 2758-2763
-
-
Segal, D.J.1
Dreier, B.2
Beerli, R.R.3
Barbas III, C.F.4
-
16
-
-
0035800769
-
Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors
-
Dreier, B., Beerli, R. R., Segal, D. J., Flippin, J. D., and Barbas, C. F., III. (2001) Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors, J. Biol. Chem. 276, 29466-29478.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29466-29478
-
-
Dreier, B.1
Beerli, R.R.2
Segal, D.J.3
Flippin, J.D.4
Barbas III, C.F.5
-
17
-
-
0032578492
-
Artificial nine zinc-finger peptide with 30 base pair binding sites
-
Kamiuchi, T., Abe, E., Imanishi, M., Kaji, T., Nagaoka, M., and Sugiura, Y. (1998) Artificial nine zinc-finger peptide with 30 base pair binding sites, Biochemistry 37, 13827-13834.
-
(1998)
Biochemistry
, vol.37
, pp. 13827-13834
-
-
Kamiuchi, T.1
Abe, E.2
Imanishi, M.3
Kaji, T.4
Nagaoka, M.5
Sugiura, Y.6
-
18
-
-
0035814891
-
Multiconnection of identical zinc finger: Implication for DNA binding affinity and unit modulation of the three zinc finger domain
-
Nagaoka, M., Kaji, T., Imanishi, M., Hori, Y., Nomura, W., and Sugiura, Y. (2001) Multiconnection of identical zinc finger: implication for DNA binding affinity and unit modulation of the three zinc finger domain, Biochemistry 40, 2932-2941.
-
(2001)
Biochemistry
, vol.40
, pp. 2932-2941
-
-
Nagaoka, M.1
Kaji, T.2
Imanishi, M.3
Hori, Y.4
Nomura, W.5
Sugiura, Y.6
-
19
-
-
0035852693
-
Design of polyzinc finger peptides with structured linkers
-
Moore, M., Choo, Y., and Klug, A. (2001) Design of polyzinc finger peptides with structured linkers, Proc. Natl. Acad. Sci. U.S.A. 98, 1432-1436.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 1432-1436
-
-
Moore, M.1
Choo, Y.2
Klug, A.3
-
20
-
-
0346365106
-
Effects of length and position of an extended linker on sequence-selective DNA recognition of zinc finger peptides
-
Nomura, W., and Sugiura, Y. (2003) Effects of length and position of an extended linker on sequence-selective DNA recognition of zinc finger peptides, Biochemistry 42, 14805-14813.
-
(2003)
Biochemistry
, vol.42
, pp. 14805-14813
-
-
Nomura, W.1
Sugiura, Y.2
-
21
-
-
2442711545
-
Exchange of histidine spacing between Sp1 and GLI zinc fingers: Distinct effect of histidine spacing-linker region on DNA binding
-
Shiraishi, Y., Imanishi, M., and Sugiura, Y. (2004) Exchange of histidine spacing between Sp1 and GLI zinc fingers: distinct effect of histidine spacing-linker region on DNA binding, Biochemistry 43, 6352-6359.
-
(2004)
Biochemistry
, vol.43
, pp. 6352-6359
-
-
Shiraishi, Y.1
Imanishi, M.2
Sugiura, Y.3
-
22
-
-
0020529697
-
Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II
-
Dynan, W. S., and Tjian, R. (1983) Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II, Cell 32, 669-680.
-
(1983)
Cell
, vol.32
, pp. 669-680
-
-
Dynan, W.S.1
Tjian, R.2
-
23
-
-
46149139074
-
Promoter-specific activation of RNA polymerase II transcription by Sp1
-
Kadonaga, J. T., Jones, K. A., and Tjian, R. (1986) Promoter-specific activation of RNA polymerase II transcription by Sp1, Trends Biochem. Sci. 11, 20-23.
-
(1986)
Trends Biochem. Sci.
, vol.11
, pp. 20-23
-
-
Kadonaga, J.T.1
Jones, K.A.2
Tjian, R.3
-
24
-
-
0030960879
-
Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition
-
Narayan, V. A., Kriwacki, R. W., and Caradonna, J. P. (1997) Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition, J. Biol. Chem. 272, 7801-7809.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 7801-7809
-
-
Narayan, V.A.1
Kriwacki, R.W.2
Caradonna, J.P.3
-
25
-
-
0023930186
-
The GLI gene is a member of the Kruppel family of zinc finger proteins
-
Kinzler, K. W., Ruppert, S. H., Bigner, S. H., and Vogelstein, B. (1988) The GLI gene is a member of the Kruppel family of zinc finger proteins, Nature 332, 371-374.
-
(1988)
Nature
, vol.332
, pp. 371-374
-
-
Kinzler, K.W.1
Ruppert, S.H.2
Bigner, S.H.3
Vogelstein, B.4
-
26
-
-
0027423758
-
Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
-
Pavletich, N. P., and Pabo, C. O. (1993) Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers, Science 261, 1701-1707.
-
(1993)
Science
, vol.261
, pp. 1701-1707
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
27
-
-
0035852803
-
Finger-positional change in three zinc finger protein Sp1: Influence of terminal finger in DNA recognition
-
Uno, Y., Matsushita, K., Nagaoka, M., and Sugiura, Y. (2001) Finger-positional change in three zinc finger protein Sp1: influence of terminal finger in DNA recognition, Biochemistry 40, 1787-1795.
-
(2001)
Biochemistry
, vol.40
, pp. 1787-1795
-
-
Uno, Y.1
Matsushita, K.2
Nagaoka, M.3
Sugiura, Y.4
-
28
-
-
0032510823
-
Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1
-
Yokono, M., Saegusa, N., Matsushita, K., and Sugiura, Y. (1998) Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1, Biochemistry 37, 6824-6832.
-
(1998)
Biochemistry
, vol.37
, pp. 6824-6832
-
-
Yokono, M.1
Saegusa, N.2
Matsushita, K.3
Sugiura, Y.4
-
29
-
-
0022437260
-
Quantitative DNase footprint titration: A method for studying protein-DNA interactions
-
Brenowitz, M., Senear, D. F., Shea, M. A., and Ackers, G. K. (1986) Quantitative DNase footprint titration: a method for studying protein-DNA interactions, Methods Enzymol. 130, 132-181.
-
(1986)
Methods Enzymol.
, vol.130
, pp. 132-181
-
-
Brenowitz, M.1
Senear, D.F.2
Shea, M.A.3
Ackers, G.K.4
-
30
-
-
0026353468
-
DNA contacts probed by modification protection and interference studies
-
Wissmann, A., and Hillen, W. (1991) DNA contacts probed by modification protection and interference studies, Methods Enzymol. 208, 365-379.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 365-379
-
-
Wissmann, A.1
Hillen, W.2
-
31
-
-
0026048738
-
Alternating zinc fingers in the human male-associated protein ZFY: HX3H and HX4H motifs encode a local structural switch
-
Kochoyan, M., Keutmann, H. T., and Weiss, M. A. (1991) Alternating zinc fingers in the human male-associated protein ZFY: HX3H and HX4H motifs encode a local structural switch, Biochemistry 30, 9396-9402.
-
(1991)
Biochemistry
, vol.30
, pp. 9396-9402
-
-
Kochoyan, M.1
Keutmann, H.T.2
Weiss, M.A.3
-
32
-
-
0015930720
-
Chain reversals in proteins
-
Lewis, P. N., Momany, F. A., and Scherage, H. A. (1973) Chain reversals in proteins, Biochim. Biophys. Acta 303, 211-229.
-
(1973)
Biochim. Biophys. Acta
, vol.303
, pp. 211-229
-
-
Lewis, P.N.1
Momany, F.A.2
Scherage, H.A.3
-
33
-
-
0019443447
-
The anatomy and taxonomy of protein structure
-
Richardson, J. S. (1981) The anatomy and taxonomy of protein structure, Adv. Protein Chem. 34, 167-339.
-
(1981)
Adv. Protein Chem.
, vol.34
, pp. 167-339
-
-
Richardson, J.S.1
-
34
-
-
0021779081
-
Turns in peptides and proteins
-
Rose, G. D., Gierasch, L. M., and Smith, J. A. (1985) Turns in peptides and proteins, Adv. Protein Chem. 37, 1-109.
-
(1985)
Adv. Protein Chem.
, vol.37
, pp. 1-109
-
-
Rose, G.D.1
Gierasch, L.M.2
Smith, J.A.3
-
35
-
-
13144252268
-
Design, synthesis and structure of a zinc finger with an artificial beta-turn
-
Viles, J. H., Patel, S. U., Mitchell, J. B., Moody, C. M., Justice, D. E., Uppenbrink, J., Doyle, P. M., Harris, C. J., Sadler, P. J., and Thornton, J. M. (1998) Design, synthesis and structure of a zinc finger with an artificial beta-turn, J. Mol. Biol. 279, 973-986.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 973-986
-
-
Viles, J.H.1
Patel, S.U.2
Mitchell, J.B.3
Moody, C.M.4
Justice, D.E.5
Uppenbrink, J.6
Doyle, P.M.7
Harris, C.J.8
Sadler, P.J.9
Thornton, J.M.10
-
36
-
-
0034723158
-
DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers
-
Laity, J. H., Dyson, H. J., and Wright, P. E. (2000) DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers, J. Mol. Biol. 295, 719-727.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 719-727
-
-
Laity, J.H.1
Dyson, H.J.2
Wright, P.E.3
-
37
-
-
0027749348
-
The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition
-
Fairall, L., Schwabe, J. W., Chapman, L., Finch, J. T., and Rhodes, D. (1993) The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition, Nature 366, 483-487.
-
(1993)
Nature
, vol.366
, pp. 483-487
-
-
Fairall, L.1
Schwabe, J.W.2
Chapman, L.3
Finch, J.T.4
Rhodes, D.5
-
38
-
-
0032539846
-
Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
-
Nolte, R. T., Conlin, R. M., Harrison, S. C., and Brown, R. S. (1998) Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex, Proc. Natl. Acad. Sci. U.S.A. 95, 2938-2943.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 2938-2943
-
-
Nolte, R.T.1
Conlin, R.M.2
Harrison, S.C.3
Brown, R.S.4
|