-
1
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
-
Pavletich, N. P., and Pabo, C. O. (1991) Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å, Science 252, 809-817.
-
(1991)
Science
, vol.252
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
2
-
-
0030587774
-
Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger-DNA interactions
-
Elrod-Erickson, M., Rould, M. A., Nekludova, L., and Pabo, C. O. (1996) Zif268 protein-DNA complex refined at 1.6 Å: a model system for understanding zinc finger-DNA interactions, Structure 4, 1171-1180.
-
(1996)
Structure
, vol.4
, pp. 1171-1180
-
-
Elrod-Erickson, M.1
Rould, M.A.2
Nekludova, L.3
Pabo, C.O.4
-
3
-
-
0026742626
-
Toward rules relating zinc finger protein sequences and DNA binding site preferences
-
Desjarlais, J. R., and Berg, J. M. (1992) Toward rules relating zinc finger protein sequences and DNA binding site preferences, Proc. Natl. Acad. Sci. U.S.A. 89, 7345-7349.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 7345-7349
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
4
-
-
0026571368
-
Redesigning the DNA-binding specificity of a zinc finger protein: A data base-guided approach
-
Desjarlais, J. R., and Berg, J. M. (1992) Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach, Proteins 12, 101-104.
-
(1992)
Proteins
, vol.12
, pp. 101-104
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
5
-
-
0026891516
-
Redesigning the DNA-binding specificity of a zinc finger protein: A data base-guided approach
-
Desjarlais, J. R., and Berg, J. M. (1992) Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach, Proteins 13, 272.
-
(1992)
Proteins
, vol.13
, pp. 272
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
6
-
-
0027401045
-
Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins
-
Desjarlais, J. R., and Berg, J. M. (1993) Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins, Proc. Natl. Acad. Sci. U.S.A. 90, 2256-2260.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 2256-2260
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
7
-
-
0028328872
-
Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
-
Reber, E. J., and Pabo, C. O. (1994) Zinc finger phage: affinity selection of fingers with new DNA-binding specificities, Science 263, 671-673.
-
(1994)
Science
, vol.263
, pp. 671-673
-
-
Reber, E.J.1
Pabo, C.O.2
-
8
-
-
0027994717
-
Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage
-
Choo, Y., and Klug, A. (1994) Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage, Proc. Natl. Acad. Sci. U.S.A. 91, 11163-11167.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11163-11167
-
-
Choo, Y.1
Klug, A.2
-
9
-
-
0028046895
-
Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
-
Choo, Y., and Klug, A. (1994) Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions, Proc. Natl. Acad. Sci. U.S.A. 91, 11168-11172.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 11168-11172
-
-
Choo, Y.1
Klug, A.2
-
10
-
-
0031053362
-
A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
-
Greisman, H. A., and Pabo, C. O. (1997) A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites, Science 275, 657-661.
-
(1997)
Science
, vol.275
, pp. 657-661
-
-
Greisman, H.A.1
Pabo, C.O.2
-
11
-
-
0033970147
-
Design of novel sequence-specific DNA-binding proteins
-
Segal, D. J., and Barbas, C. F., III (2000) Design of novel sequence-specific DNA-binding proteins, Curr. Opin. Chem. Biol. 4, 34-39.
-
(2000)
Curr. Opin. Chem. Biol.
, vol.4
, pp. 34-39
-
-
Segal, D.J.1
Barbas III, C.F.2
-
12
-
-
0030940295
-
Synergy between adjacent zinc fingers in sequence-specific DNA recognition
-
Isalan, M., Choo, Y., and Klug, A. (1997) Synergy between adjacent zinc fingers in sequence-specific DNA recognition, Proc. Natl. Acad. Sci. U.S.A. 94, 5617-5621.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 5617-5621
-
-
Isalan, M.1
Choo, Y.2
Klug, A.3
-
13
-
-
0037118709
-
Interconversion between serine and aspartic acid in the alpha helix of the N-terminal zinc finger of Sp1: Implication for general recognition code and for design of novel zinc finger peptide recognizing complementary strand
-
Nagaoka, M., Shiraishi, Y., Uno, Y., Nomura, W., and Sugiura, Y. (2002) Interconversion between serine and aspartic acid in the alpha helix of the N-terminal zinc finger of Sp1: implication for general recognition code and for design of novel zinc finger peptide recognizing complementary strand, Biochemistry 41, 8819-8825.
-
(2002)
Biochemistry
, vol.41
, pp. 8819-8825
-
-
Nagaoka, M.1
Shiraishi, Y.2
Uno, Y.3
Nomura, W.4
Sugiura, Y.5
-
14
-
-
0034723158
-
DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers
-
Laity, J. H., Dyson, J., and Wright, P. E. (2000) DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers, J. Mol. Biol. 295, 719-727.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 719-727
-
-
Laity, J.H.1
Dyson, J.2
Wright, P.E.3
-
15
-
-
0026048738
-
Alternating zinc fingers in the human male-associated protein ZFY: HX3H and HX4H motifs encode a local structural switch
-
Kochoyan, M., Keutmann, H. T., and Weiss, M. A. (1991) Alternating zinc fingers in the human male-associated protein ZFY: HX3H and HX4H motifs encode a local structural switch, Biochemistry 30, 9396-9402.
-
(1991)
Biochemistry
, vol.30
, pp. 9396-9402
-
-
Kochoyan, M.1
Keutmann, H.T.2
Weiss, M.A.3
-
16
-
-
0025110477
-
High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution
-
Omichinski, J. G., Clore, G. M., Appella, E., Sakaguchi, K., and Gronenborn, A. M. (1990) High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution, Biochemistry 29, 9324-9334.
-
(1990)
Biochemistry
, vol.29
, pp. 9324-9334
-
-
Omichinski, J.G.1
Clore, G.M.2
Appella, E.3
Sakaguchi, K.4
Gronenborn, A.M.5
-
17
-
-
0020529697
-
Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II
-
Dynan, W. S., and Tjian, R. (1983) Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II, Cell 32, 669-680.
-
(1983)
Cell
, vol.32
, pp. 669-680
-
-
Dynan, W.S.1
Tjian, R.2
-
18
-
-
46149139074
-
Promoter-specific activation of RNA polymerase II transcription by Sp1
-
Kadonaga, J. T., Jones, K. A., and Tjian, R. (1986) Promoter-specific activation of RNA polymerase II transcription by Sp1, Trends Biochem. Sci. 11, 20-23.
-
(1986)
Trends Biochem. Sci.
, vol.11
, pp. 20-23
-
-
Kadonaga, J.T.1
Jones, K.A.2
Tjian, R.3
-
19
-
-
0030960879
-
Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition
-
Narayan, V. A., Kriwacki, R. W., and Caradonna, J. P. (1997) Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition, J. Biol. Chem. 272, 7801-7809.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 7801-7809
-
-
Narayan, V.A.1
Kriwacki, R.W.2
Caradonna, J.P.3
-
20
-
-
0027749348
-
The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition
-
Fairall, L., Schwabe, J. W. R., Chapman, L., Finch, J. T., and Rhodes, D. (1993) The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition, Nature 366, 483-487.
-
(1993)
Nature
, vol.366
, pp. 483-487
-
-
Fairall, L.1
Schwabe, J.W.R.2
Chapman, L.3
Finch, J.T.4
Rhodes, D.5
-
21
-
-
0032539846
-
Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
-
Nolte, R. T., Conlin, R. M., Harrison, S. C., and Brown, R. S. (1998) Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex, Proc. Natl. Acad. Sci. U.S.A. 95, 2938-2943.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 2938-2943
-
-
Nolte, R.T.1
Conlin, R.M.2
Harrison, S.C.3
Brown, R.S.4
-
22
-
-
0023930186
-
The GLI gene is a member of the Kruppel family of zinc finger proteins
-
Kinzler, K. W., Ruppert, S. H., Bigner, S. H., and Vogelstein, B. (1988) The GLI gene is a member of the Kruppel family of zinc finger proteins, Nature 332, 371-374.
-
(1988)
Nature
, vol.332
, pp. 371-374
-
-
Kinzler, K.W.1
Ruppert, S.H.2
Bigner, S.H.3
Vogelstein, B.4
-
23
-
-
0027423758
-
Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
-
Pavletich, N. P., and Pabo, C. O. (1993) Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers, Science 261, 1701-1707.
-
(1993)
Science
, vol.261
, pp. 1701-1707
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
24
-
-
0032510823
-
Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1
-
Yokono, M., Saegusa, N., Matsushita, K., and Sugiura, Y. (1998) Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1, Biochemistry 37, 6824-6832.
-
(1998)
Biochemistry
, vol.37
, pp. 6824-6832
-
-
Yokono, M.1
Saegusa, N.2
Matsushita, K.3
Sugiura, Y.4
-
25
-
-
0035852803
-
Finger-positional change in three zinc finger protein Sp1: Influence of terminal finger in DNA recognition
-
Uno, Y., Matsushita, K., Nagaoka, M., and Sugiura, Y. (2001) Finger-positional change in three zinc finger protein Sp1: influence of terminal finger in DNA recognition, Biochemistry 40, 1787-1795.
-
(2001)
Biochemistry
, vol.40
, pp. 1787-1795
-
-
Uno, Y.1
Matsushita, K.2
Nagaoka, M.3
Sugiura, Y.4
-
26
-
-
0022437260
-
Quantitative DNase footprint titration: A method for studying protein-DNA interactions
-
Brenowitz, M., Senear, D. F., Shea, M. A., and Ackers, G. K. (1986) Quantitative DNase footprint titration: a method for studying protein-DNA interactions, Methods Enzymol. 130, 132-181.
-
(1986)
Methods Enzymol
, vol.130
, pp. 132-181
-
-
Brenowitz, M.1
Senear, D.F.2
Shea, M.A.3
Ackers, G.K.4
-
27
-
-
0026353468
-
DNA contacts probed by modification protection and interference studies
-
Wissmann, A., and Hillen, W. (1991) DNA contacts probed by modification protection and interference studies, Methods Enzymol. 208, 365-379.
-
(1991)
Methods Enzymol
, vol.208
, pp. 365-379
-
-
Wissmann, A.1
Hillen, W.2
-
28
-
-
0023375317
-
Metal-dependent folding of a single zinc finger from transcription factor IIIA
-
Frankel, A. D., Berg, J. M., and Pabo, C. O. (1987) Metal-dependent folding of a single zinc finger from transcription factor IIIA, Proc. Natl. Acad. Sci. U.S.A. 84, 4841-4845.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 4841-4845
-
-
Frankel, A.D.1
Berg, J.M.2
Pabo, C.O.3
-
29
-
-
0034674960
-
4 domain
-
4 domain, J. Am. Chem. Soc. 122, 7648-7653.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 7648-7653
-
-
Hori, Y.1
Suzuki, K.2
Okuno, Y.3
Nagaoka, M.4
Futaki, S.5
Sugiura, Y.6
-
30
-
-
0025302220
-
Alternating zinc-finger motifs in the human male-associated protein ZFY
-
Weiss, M. A., Mason, K. A., Dahl, C. E., and Keutmann, H. T. (1990) Alternating zinc-finger motifs in the human male-associated protein ZFY, Biochemistry 29, 5660-5664.
-
(1990)
Biochemistry
, vol.29
, pp. 5660-5664
-
-
Weiss, M.A.1
Mason, K.A.2
Dahl, C.E.3
Keutmann, H.T.4
-
31
-
-
0028181779
-
Structure of a histidine-X4-histidine zinc finger domain: Insights into ADR1-UAS1 protein-DNA recognition
-
Bernstein, B. E., Hoffman, R. C., Horvath, S., Herriott, J. R., and Klevit, R. E. (1994) Structure of a histidine-X4-histidine zinc finger domain: insights into ADR1-UAS1 protein-DNA recognition, Biochemistry 33, 4460-4470.
-
(1994)
Biochemistry
, vol.33
, pp. 4460-4470
-
-
Bernstein, B.E.1
Hoffman, R.C.2
Horvath, S.3
Herriott, J.R.4
Klevit, R.E.5
-
32
-
-
0029126839
-
A single amino acid substitution in zinc finger 2 of Adr1p changes its binding specificity at two positions in UAS1
-
Cheng, C., and Young, E. T. (1995) A single amino acid substitution in zinc finger 2 of Adr1p changes its binding specificity at two positions in UAS1, J. Mol. Biol. 251, 1-8.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 1-8
-
-
Cheng, C.1
Young, E.T.2
-
33
-
-
0027209218
-
Status of the transcription factors database (TFD)
-
Ghosh, D. (1993) Status of the transcription factors database (TFD), Nucleic Acids Res. 21, 3117-3118.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3117-3118
-
-
Ghosh, D.1
-
34
-
-
0033624684
-
DNA recognition by Cys2His2 zinc finger proteins
-
Wolfe, S. A., Nekludova, L., and Pabo, C. O. (2000) DNA recognition by Cys2His2 zinc finger proteins, Annu. Rev. Biophys. Biomol. Struct. 29, 183-212.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct.
, vol.29
, pp. 183-212
-
-
Wolfe, S.A.1
Nekludova, L.2
Pabo, C.O.3
-
35
-
-
0025891585
-
Alternating zinc fingers in the human male associated protein ZFY: 2D NMR structure of an even finger and implications for "jumping-linker" DNA recognition
-
Kochoyan, M., Havel, T. F., Nguyen, D. T., Dahl, C. E., Keutmann, H. T., and Weiss, M. A. (1991) Alternating zinc fingers in the human male associated protein ZFY: 2D NMR structure of an even finger and implications for "jumping-linker" DNA recognition, Biochemistry 30, 3371-3386.
-
(1991)
Biochemistry
, vol.30
, pp. 3371-3386
-
-
Kochoyan, M.1
Havel, T.F.2
Nguyen, D.T.3
Dahl, C.E.4
Keutmann, H.T.5
Weiss, M.A.6
-
36
-
-
0037098864
-
Contribution of individual zinc ligands to metal binding and peptide folding of zinc finger peptides
-
Nomura, A., and Sugiura, Y. (2002) Contribution of individual zinc ligands to metal binding and peptide folding of zinc finger peptides, Inorg. Chem. 41, 3693-3698.
-
(2002)
Inorg. Chem.
, vol.41
, pp. 3693-3698
-
-
Nomura, A.1
Sugiura, Y.2
-
37
-
-
0042346328
-
CCHX zinc finger derivatives retain the ability to bind Zn(II) and mediate protein-DNA interactions
-
Simpson, R. J. Y., Cram, E. D., Czolij, R., Matthews, J. M., Crossley, M., and Machay J. P. (2003) CCHX zinc finger derivatives retain the ability to bind Zn(II) and mediate protein-DNA interactions, J. Biol. Chem. 278, 28011-28018.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 28011-28018
-
-
Simpson, R.J.Y.1
Cram, E.D.2
Czolij, R.3
Matthews, J.M.4
Crossley, M.5
Machay, J.P.6
-
38
-
-
0034661843
-
Combining structure-based design with phage display to create new Cys(2)-His(2) zinc finger dimers
-
Wolfe, S. A., Ramm, E. I., and Pabo, C. O. (2000) Combining structure-based design with phage display to create new Cys(2)-His(2) zinc finger dimers, Structure 8, 739-750.
-
(2000)
Structure
, vol.8
, pp. 739-750
-
-
Wolfe, S.A.1
Ramm, E.I.2
Pabo, C.O.3
|