-
1
-
-
0042692850
-
High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes
-
Allen E, Horvath S, Tong F, Spiteri E, Riggs AD, Marahrens Y: High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes. Proc Natl Acad Sci USA 100:9940-9945 (2003).
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9940-9945
-
-
Allen, E.1
Horvath, S.2
Tong, F.3
Spiteri, E.4
Riggs, A.D.5
Marahrens, Y.6
-
2
-
-
0031950437
-
Complex structure of knob DNA on maize chromosome 9: Retrotransposon invasion into heterochromatin
-
Ananiev EV, Phillips RL, Rines HW: Complex structure of knob DNA on maize chromosome 9: retrotransposon invasion into heterochromatin. Genetics 149:2025-2037 (1998a).
-
(1998)
Genetics
, vol.149
, pp. 2025-2037
-
-
Ananiev, E.V.1
Phillips, R.L.2
Rines, H.W.3
-
3
-
-
0032573174
-
Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions
-
Ananiev EV, Phillips RL, Rines HW: Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions. Proc Natl Acad Sci USA 95:13073-13078 (1998b).
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 13073-13078
-
-
Ananiev, E.V.1
Phillips, R.L.2
Rines, H.W.3
-
4
-
-
0030447579
-
A cereal centromeric sequence
-
Aragon-Alcaide L, Miller T, Schwarzacher T, Reader S, Moore G: A cereal centromeric sequence. Chromosoma 105:261-268 (1996).
-
(1996)
Chromosoma
, vol.105
, pp. 261-268
-
-
Aragon-Alcaide, L.1
Miller, T.2
Schwarzacher, T.3
Reader, S.4
Moore, G.5
-
5
-
-
0035807812
-
Three retrotransposon families in the genome of Giardia lamblia: Two telomeric, one dead
-
Arkhipova IR, Morrison HG: Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one dead. Proc Natl Acad Sci USA 98:14497-14502 (2001).
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14497-14502
-
-
Arkhipova, I.R.1
Morrison, H.G.2
-
6
-
-
0032715524
-
Association of some potential hormone response elements in human genes with Alu family repeats
-
Babich V, Aksenov N, Alexeenko V, Oei SL, Buchlow G, Tomilin N: Association of some potential hormone response elements in human genes with Alu family repeats. Gene 239:341-349 (1999).
-
(1999)
Gene
, vol.239
, pp. 341-349
-
-
Babich, V.1
Aksenov, N.2
Alexeenko, V.3
Oei, S.L.4
Buchlow, G.5
Tomilin, N.6
-
7
-
-
0034612238
-
Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
-
Bailey JA, Carrel L, Chakravarti A, Eichler EE: Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis. Proc Natl Acad Sci USA 97:6634-6639 (2000).
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6634-6639
-
-
Bailey, J.A.1
Carrel, L.2
Chakravarti, A.3
Eichler, E.E.4
-
8
-
-
0142059650
-
An Alu transposition model for the origin and expansion of human segmental duplications
-
Bailey JA, Liu G, Eichler EE: An Alu transposition model for the origin and expansion of human segmental duplications. Am J Hum Genet 73:823-834 (2003).
-
(2003)
Am J Hum Genet
, vol.73
, pp. 823-834
-
-
Bailey, J.A.1
Liu, G.2
Eichler, E.E.3
-
9
-
-
0027500890
-
Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element
-
Becker KG, Swergold GD, Ozata K, Thayer RE: Binding of the ubiquitous nuclear transcription factor YY1 to a cis regulatory sequence in the human LINE-1 transposable element. Hum Mol Genet 2:1697-1702 (1993).
-
(1993)
Hum Mol Genet
, vol.2
, pp. 1697-1702
-
-
Becker, K.G.1
Swergold, G.D.2
Ozata, K.3
Thayer, R.E.4
-
10
-
-
0032478294
-
Plant genome values: How much do we know?
-
Bennett MD: Plant genome values: how much do we know? Proc Natl Acad Sci USA 95:2011-2016 (1998).
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2011-2016
-
-
Bennett, M.D.1
-
11
-
-
0033976643
-
Transposable elements contributions to plant gene and genome evolution
-
Bennetzen JL: Transposable elements contributions to plant gene and genome evolution. Plant Mol Biol 42:251-269 (2000).
-
(2000)
Plant Mol Biol
, vol.42
, pp. 251-269
-
-
Bennetzen, J.L.1
-
12
-
-
0033788565
-
The end of the (DNA) line
-
Blackburn EH: The end of the (DNA) line. Nat Struct Biol 7:847-850 (2000).
-
(2000)
Nat Struct Biol
, vol.7
, pp. 847-850
-
-
Blackburn, E.H.1
-
13
-
-
0034807196
-
Short interspersed elements (SINEs) from insectivores. Two classes of mammalian SINEs distinguished by A-rich tail structure
-
Borodulina OR, Kramerov DA: Short interspersed elements (SINEs) from insectivores. Two classes of mammalian SINEs distinguished by A-rich tail structure. Mammal Genome 12:779-786 (2001).
-
(2001)
Mammal Genome
, vol.12
, pp. 779-786
-
-
Borodulina, O.R.1
Kramerov, D.A.2
-
14
-
-
0029796901
-
DNA sequence insertion and evolutionary variation in gene regulation
-
Britten RJ: DNA sequence insertion and evolutionary variation in gene regulation. Proc Natl Acad Sci USA 93:9374-9377 (1996).
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 9374-9377
-
-
Britten, R.J.1
-
15
-
-
0015070886
-
Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
-
Britten RJ, Davidson EH: Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Quart Rev Biol 46:111-138 (1971).
-
(1971)
Quart Rev Biol
, vol.46
, pp. 111-138
-
-
Britten, R.J.1
Davidson, E.H.2
-
16
-
-
0032865868
-
RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements
-
Brosius J: RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements. Gene 238:115-134 (1999).
-
(1999)
Gene
, vol.238
, pp. 115-134
-
-
Brosius, J.1
-
17
-
-
0042978644
-
Visualization of chromatin domains created by the gypsy insulator of Drosophila
-
Byrd K, Corces VG: Visualization of chromatin domains created by the gypsy insulator of Drosophila. J Cell Biol 162:565-574 (2003).
-
(2003)
J Cell Biol
, vol.162
, pp. 565-574
-
-
Byrd, K.1
Corces, V.G.2
-
19
-
-
0037660059
-
Ero1-L, an ischemia-inducible gene from rat brain with homology to global ischemia-induced gene 11 (Giig11), is localized to neuronal dendrites by a dispersed identifier (ID) element-dependent mechanism
-
Chen D, Kunlin J, Kawaguchi K, Nakayama M, Zhou X, Xiong Z, Zhou A, Mao XO, Greenberg DA, Graham SH, Simon RP: Ero1-L, an ischemia-inducible gene from rat brain with homology to global ischemia-induced gene 11 (Giig11), is localized to neuronal dendrites by a dispersed identifier (ID) element-dependent mechanism. J Neurochem 85:670-679 (2003).
-
(2003)
J Neurochem
, vol.85
, pp. 670-679
-
-
Chen, D.1
Kunlin, J.2
Kawaguchi, K.3
Nakayama, M.4
Zhou, X.5
Xiong, Z.6
Zhou, A.7
Mao, X.O.8
Greenberg, D.A.9
Graham, S.H.10
Simon, R.P.11
-
20
-
-
0035695251
-
The gypsy insulator of Drosophila affects chromatin structure in a directional manner
-
Chen S, Corces VG: The gypsy insulator of Drosophila affects chromatin structure in a directional manner. Genetics 159:1649-1658 (2001).
-
(2001)
Genetics
, vol.159
, pp. 1649-1658
-
-
Chen, S.1
Corces, V.G.2
-
21
-
-
0036671661
-
Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon
-
Cheng ZF, Dong T, Langdon S, Ouyang CR, Buell FR, Blattner F, Jiang J: Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. Plant Cell 14:1691-1704 (2002).
-
(2002)
Plant Cell
, vol.14
, pp. 1691-1704
-
-
Cheng, Z.F.1
Dong, T.2
Langdon, S.3
Ouyang, C.R.4
Buell, F.R.5
Blattner, F.6
Jiang, J.7
-
22
-
-
0038124436
-
A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives
-
Cheng Z-J, Murata M: A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives. Genetics 164:665-672 (2003).
-
(2003)
Genetics
, vol.164
, pp. 665-672
-
-
Cheng, Z.-J.1
Murata, M.2
-
23
-
-
0022388858
-
The association of the interspersed repetitive KpnI sequences with the nuclear matrix
-
Chimera JA, Musich PR: The association of the interspersed repetitive KpnI sequences with the nuclear matrix. J Biol Chem 260:9373-9379 (1985).
-
(1985)
J Biol Chem
, vol.260
, pp. 9373-9379
-
-
Chimera, J.A.1
Musich, P.R.2
-
24
-
-
3242783252
-
Murine metastable alleles and transgenerational epigenetic inheritance
-
Chong S, Whitelaw E: Murine metastable alleles and transgenerational epigenetic inheritance. Cytogenet Genome Res 105:311-315 (2004).
-
(2004)
Cytogenet Genome Res
, vol.105
, pp. 311-315
-
-
Chong, S.1
Whitelaw, E.2
-
25
-
-
0036073174
-
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine
-
Chureau C, Prissette M, Bourdet A, Barbe V, Cattolico L, Jones L, Eggen A, Avner P, Duret L: Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Genome Res 12:894-908 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 894-908
-
-
Chureau, C.1
Prissette, M.2
Bourdet, A.3
Barbe, V.4
Cattolico, L.5
Jones, L.6
Eggen, A.7
Avner, P.8
Duret, L.9
-
26
-
-
0031794379
-
Characterization of sequences associated with position-effect variegation at pericentric sites in Drosophila heterochromatin
-
Cryderman DE, Cuaycong MH, Elgin SCR, Wallrath LL: Characterization of sequences associated with position-effect variegation at pericentric sites in Drosophila heterochromatin. Chromosoma 107:277-285 (1998).
-
(1998)
Chromosoma
, vol.107
, pp. 277-285
-
-
Cryderman, D.E.1
Cuaycong, M.H.2
Elgin, S.C.R.3
Wallrath, L.L.4
-
28
-
-
0033119484
-
Revising the selfish DNA hypothesis: New evidence on accumulation of transposable elements in heterochromatin
-
Dimitri P, Junakovic N: Revising the selfish DNA hypothesis: new evidence on accumulation of transposable elements in heterochromatin. Trends Genet 15:123-124 (1999).
-
(1999)
Trends Genet
, vol.15
, pp. 123-124
-
-
Dimitri, P.1
Junakovic, N.2
-
29
-
-
0035500899
-
Recent duplication, domain accretion and the dynamic mutation of the human genome
-
Eichler EE: Recent duplication, domain accretion and the dynamic mutation of the human genome. Trends Genet 17:661-669 (2001).
-
(2001)
Trends Genet
, vol.17
, pp. 661-669
-
-
Eichler, E.E.1
-
30
-
-
0035042431
-
Transposable B2 SINE elements can provide mobile RNA polymerase II promoters
-
Ferrigno O, Virolle T, Djabari Z, Ortonne JP, White RJ, Aberdam D: Transposable B2 SINE elements can provide mobile RNA polymerase II promoters. Nat Genet 28:77-81 (2001).
-
(2001)
Nat Genet
, vol.28
, pp. 77-81
-
-
Ferrigno, O.1
Virolle, T.2
Djabari, Z.3
Ortonne, J.P.4
White, R.J.5
Aberdam, D.6
-
31
-
-
0033972531
-
Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends
-
Figueiredo LM, Pirrit LA, Scherf A: Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends. Mol Biochem Parasitol 106:169-174 (2000).
-
(2000)
Mol Biochem Parasitol
, vol.106
, pp. 169-174
-
-
Figueiredo, L.M.1
Pirrit, L.A.2
Scherf, A.3
-
32
-
-
0037083982
-
A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation
-
Figeuiredo LM, Freitas-Junior LH, Bottius E, Olivo-Martin J-C, Schert A: A central role for Plasmodium falciparum subtelomeric regions in spatial positioning and telomere length regulation. EMBO J21:815-824 (2002).
-
(2002)
EMBO J
, vol.21
, pp. 815-824
-
-
Figeuiredo, L.M.1
Freitas-Junior, L.H.2
Bottius, E.3
Olivo-Martin, J.-C.4
Schert, A.5
-
33
-
-
0033638334
-
A chromatin insulator determines the nuclear localizations of DNA
-
Gerasimova TI, Byrd K, Corces VG: A chromatin insulator determines the nuclear localizations of DNA. Mol Cell 6:1025-1035 (2000).
-
(2000)
Mol Cell
, vol.6
, pp. 1025-1035
-
-
Gerasimova, T.I.1
Byrd, K.2
Corces, V.G.3
-
34
-
-
0033017956
-
CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs
-
Gilbert N, Labuda D: CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs. Proc Natl Acad Sci USA 96:2869-2874 (1999).
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2869-2874
-
-
Gilbert, N.1
Labuda, D.2
-
35
-
-
2442667886
-
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
-
Han JS, Szak ST, Boeke JD: Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429:268-274 (2004).
-
(2004)
Nature
, vol.429
, pp. 268-274
-
-
Han, J.S.1
Szak, S.T.2
Boeke, J.D.3
-
36
-
-
0002721912
-
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
-
Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, Karpen GH: Heterochromatic sequences in a Drosophila whole-genome shotgun assembly. Genome Biol 3:0085.1-0085.16 (2002).
-
(2002)
Genome Biol
, vol.3
-
-
Hoskins, R.A.1
Smith, C.D.2
Carlson, J.W.3
Carvalho, A.B.4
Halpern, A.5
Kaminker, J.S.6
Kennedy, C.7
Mungall, C.J.8
Sullivan, B.A.9
Sutton, G.G.10
Yasuhara, J.C.11
Wakimoto, B.T.12
Myers, E.W.13
Celniker, S.E.14
Rubin, G.M.15
Karpen, G.H.16
-
37
-
-
0037301560
-
Origin of a substantial fraction of human regulatory sequences from transposable elements
-
Jordan IK, Rogozin IB, Glazko GV, Koonin EV: Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet 19:68-72 (2003).
-
(2003)
Trends Genet
, vol.19
, pp. 68-72
-
-
Jordan, I.K.1
Rogozin, I.B.2
Glazko, G.V.3
Koonin, E.V.4
-
38
-
-
0028861735
-
Ubiquitous mammalian-wide interspersed repeats (MIR) are molecular fossils from the Mesozoic era
-
Jurka J, Zietkiewicz E, Labuda D: Ubiquitous mammalian-wide interspersed repeats (MIR) are molecular fossils from the Mesozoic era. Nucleic Acids Res 23:170-175 (1995).
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 170-175
-
-
Jurka, J.1
Zietkiewicz, E.2
Labuda, D.3
-
39
-
-
0030034464
-
Sporadic amplification of ID elements in rodents
-
Kass DH, Kim J, Deininger PL: Sporadic amplification of ID elements in rodents. J Mol Evol 42:7-14 (1996).
-
(1996)
J Mol Evol
, vol.42
, pp. 7-14
-
-
Kass, D.H.1
Kim, J.2
Deininger, P.L.3
-
40
-
-
0037008839
-
Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data
-
Kawai K, Nikaido M, Harada M, Matsumura S, Lim L-K, Wu Y, Hasegawa M, Okada N: Intra- and interfamily relationships of Vespertilionidae inferred by various molecular markers including SINE insertion data. J Mol Evol 55:284-301 (2002).
-
(2002)
J Mol Evol
, vol.55
, pp. 284-301
-
-
Kawai, K.1
Nikaido, M.2
Harada, M.3
Matsumura, S.4
Lim, L.-K.5
Wu, Y.6
Hasegawa, M.7
Okada, N.8
-
41
-
-
0034682732
-
L1 retrotransposons shape the mammalian genome
-
Kazazian HH: L1 retrotransposons shape the mammalian genome. Science 289:1152-1153 (2000).
-
(2000)
Science
, vol.289
, pp. 1152-1153
-
-
Kazazian, H.H.1
-
42
-
-
0034618367
-
LINEL1 retrotransposable element is targeted during the initial stages of apoptotic DNA fragmentation
-
Khodarev NN, Bennett T, Shearing N, Sokolova I, Koudelik J, Walter S, Villalobos M, Vaughn ATM: LINEL1 retrotransposable element is targeted during the initial stages of apoptotic DNA fragmentation. J Cell Biochem 79:486-495 (2000).
-
(2000)
J Cell Biochem
, vol.79
, pp. 486-495
-
-
Khodarev, N.N.1
Bennett, T.2
Shearing, N.3
Sokolova, I.4
Koudelik, J.5
Walter, S.6
Villalobos, M.7
Vaughn, A.T.M.8
-
43
-
-
0032927881
-
The evolutionary position of dormice (Gliridae) in Rodentia determined by a novel short retroposon
-
Kramerov D, Vassetzky N, Serdobova I: The evolutionary position of dormice (Gliridae) in Rodentia determined by a novel short retroposon. Mol Biol Evol 16:715-717 (1999).
-
(1999)
Mol Biol Evol
, vol.16
, pp. 715-717
-
-
Kramerov, D.1
Vassetzky, N.2
Serdobova, I.3
-
45
-
-
0037131524
-
Setting the boundaries of chromatin domains and nuclear organization
-
Labrador M, Corces VG: Setting the boundaries of chromatin domains and nuclear organization. Cell 111:151-154 (2002).
-
(2002)
Cell
, vol.111
, pp. 151-154
-
-
Labrador, M.1
Corces, V.G.2
-
46
-
-
0037298161
-
Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse
-
Lane N, Dean W, Erhardt S, Hajkova P, Surani A, Walter J, Reik W: Resistance of IAPs to methylation reprogramming may provide a mechanism for epigenetic inheritance in the mouse. Genesis 35:88-93 (2003).
-
(2003)
Genesis
, vol.35
, pp. 88-93
-
-
Lane, N.1
Dean, W.2
Erhardt, S.3
Hajkova, P.4
Surani, A.5
Walter, J.6
Reik, W.7
-
47
-
-
3543004084
-
Systematic identification of abundant A-to-I editing sites in the human transcriptome
-
Levanon EY, Eisenberg E, Yelin R, Nemzer S, Hallegger M, Shemesh R, Fligelman ZY, Shoshan A, Pollock SR, Sztybel D, Olshansky M, Rechavi G, Jantsch MF: Systematic identification of abundant A-to-I editing sites in the human transcriptome. Nat Biotechnol 22:1001-1005 (2004).
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1001-1005
-
-
Levanon, E.Y.1
Eisenberg, E.2
Yelin, R.3
Nemzer, S.4
Hallegger, M.5
Shemesh, R.6
Fligelman, Z.Y.7
Shoshan, A.8
Pollock, S.R.9
Sztybel, D.10
Olshansky, M.11
Rechavi, G.12
Jantsch, M.F.13
-
48
-
-
0035084812
-
Characterization of a SINE species from vicuna and its distribution in animal species including the family Camelidae
-
Lin Z, Nomura O, Hayashi T, Wada Y, Yasue H: Characterization of a SINE species from vicuna and its distribution in animal species including the family Camelidae. Mamm Genome 12:305-308 (2001).
-
(2001)
Mamm Genome
, vol.12
, pp. 305-308
-
-
Lin, Z.1
Nomura, O.2
Hayashi, T.3
Wada, Y.4
Yasue, H.5
-
49
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z, Gendrel A-V, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R: Role of transposable elements in heterochromatin and epigenetic control. Nature 430:471-476 (2004).
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.-V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
Carrington, J.C.11
Doerge, R.W.12
Colot, V.13
Martienssen, R.14
-
50
-
-
0034612242
-
LINE-1 elements and X chromosome inactivation: A function for "junk" DNA?
-
Lyon MF: LINE-1 elements and X chromosome inactivation: a function for "junk" DNA? Proc Natl Acad Sci USA 97:6248-6249 (2000).
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6248-6249
-
-
Lyon, M.F.1
-
51
-
-
1242319527
-
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology
-
Mallet F, Bouton O, Prudhomme S, Cheynet V, Oriol G, Bonnaud B, Lucotte G, Duret L, Mandrand B: The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology. Proc Natl Acad Sci USA 101:1731-1736 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1731-1736
-
-
Mallet, F.1
Bouton, O.2
Prudhomme, S.3
Cheynet, V.4
Oriol, G.5
Bonnaud, B.6
Lucotte, G.7
Duret, L.8
Mandrand, B.9
-
53
-
-
0034755894
-
Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome
-
Meyers BC, Tingey SV, Morgante M: Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res 11:1660-1676 (2001).
-
(2001)
Genome Res
, vol.11
, pp. 1660-1676
-
-
Meyers, B.C.1
Tingey, S.V.2
Morgante, M.3
-
54
-
-
0031732044
-
Retrotransposon-related DNA sequences in the centromeres of grass chromosomes
-
Miller JT, Dong F, Jackson SA, Song J, Jiang J: Retrotransposon-related DNA sequences in the centromeres of grass chromosomes. Genetics 150:1615-1623 (1998).
-
(1998)
Genetics
, vol.150
, pp. 1615-1623
-
-
Miller, J.T.1
Dong, F.2
Jackson, S.A.3
Song, J.4
Jiang, J.5
-
56
-
-
0028230861
-
Ingrowth by photoreceptor axons induces transcription of a retrotransposon in the developing Drosophila brain
-
Mozer BA, Benzer S: Ingrowth by photoreceptor axons induces transcription of a retrotransposon in the developing Drosophila brain. Development 120:1049-1058 (1994).
-
(1994)
Development
, vol.120
, pp. 1049-1058
-
-
Mozer, B.A.1
Benzer, S.2
-
57
-
-
0031915974
-
A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence
-
Nabirochkin S, Ossokina M, Heidmann T: A nuclear matrix/scaffold attachment region co-localizes with the gypsy retrotransposon insulator sequence. J Biol Chem 273:2473-2479 (1998).
-
(1998)
J Biol Chem
, vol.273
, pp. 2473-2479
-
-
Nabirochkin, S.1
Ossokina, M.2
Heidmann, T.3
-
58
-
-
0037295602
-
Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres
-
Nagaki K, Song J, Stupar RM, Parokonny AS, Yuan Q, Ouyang S, Liu J, Hsiao J, Jones KM, Dawe RK, Buell CR, Jiang J: Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres. Genetics 163:759-770 (2003).
-
(2003)
Genetics
, vol.163
, pp. 759-770
-
-
Nagaki, K.1
Song, J.2
Stupar, R.M.3
Parokonny, A.S.4
Yuan, Q.5
Ouyang, S.6
Liu, J.7
Hsiao, J.8
Jones, K.M.9
Dawe, R.K.10
Buell, C.R.11
Jiang, J.12
-
59
-
-
0035500898
-
Transposable elements are found in a large number of human protein coding regions
-
Nekrutenko A, Li W-H: Transposable elements are found in a large number of human protein coding regions. Trends Genet 17:619-625 (2001).
-
(2001)
Trends Genet
, vol.17
, pp. 619-625
-
-
Nekrutenko, A.1
Li, W.-H.2
-
60
-
-
0036251775
-
Many human genes are transcribed from the antisense promoter of L1 retrotransposon
-
Nigumann P, Redik K, Matlik K, Speek M: Many human genes are transcribed from the antisense promoter of L1 retrotransposon. Genomics 79: 628-634 (2002).
-
(2002)
Genomics
, vol.79
, pp. 628-634
-
-
Nigumann, P.1
Redik, K.2
Matlik, K.3
Speek, M.4
-
61
-
-
0035158692
-
Evolution of CHR-2 SINEs in cetartiodactyl genomes: Possible evidence for the monophyletic origin of toothed whales
-
Nikaido M, Matsuno F, Abe H, Shimamura M, Hamilton H, Matsubayashi H, Okada N: Evolution of CHR-2 SINEs in cetartiodactyl genomes: possible evidence for the monophyletic origin of toothed whales. Mamm Genome 12:909-915 (2001).
-
(2001)
Mamm Genome
, vol.12
, pp. 909-915
-
-
Nikaido, M.1
Matsuno, F.2
Abe, H.3
Shimamura, M.4
Hamilton, H.5
Matsubayashi, H.6
Okada, N.7
-
63
-
-
0029129326
-
Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers
-
Norris J, Fan D, Aleman C, Marks JR, Futreal PA, Wiseman RW, Inglehart JD, Deininger PL, McDonnell DP: Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers. J Biol Chem 270:22777-22782 (1995).
-
(1995)
J Biol Chem
, vol.270
, pp. 22777-22782
-
-
Norris, J.1
Fan, D.2
Aleman, C.3
Marks, J.R.4
Futreal, P.A.5
Wiseman, R.W.6
Inglehart, J.D.7
Deininger, P.L.8
McDonnell, D.P.9
-
64
-
-
0346786214
-
Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres
-
Pardue ML, DeBaryshe PG: Retrotransposons provide an evolutionarily robust non-telomerase mechanism to maintain telomeres. Ann Rev Genet 37:485-511 (2003).
-
(2003)
Ann Rev Genet
, vol.37
, pp. 485-511
-
-
Pardue, M.L.1
DeBaryshe, P.G.2
-
65
-
-
0036043750
-
Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: Implications for X-chromosome inactivation
-
Parish DA, Vise P, Wichman HA, Bull JJ, Baker RJ: Distribution of LINEs and other repetitive elements in the karyotype of the bat Carollia: implications for X-chromosome inactivation. Cytogenet Genome Res 96:191-197 (2002).
-
(2002)
Cytogenet Genome Res
, vol.96
, pp. 191-197
-
-
Parish, D.A.1
Vise, P.2
Wichman, H.A.3
Bull, J.J.4
Baker, R.J.5
-
66
-
-
0030111477
-
DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
-
Pelissier T, Tutois S, Tourmente S, Deragon JM, Picard G: DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97:141-151 (1996).
-
(1996)
Genetica
, vol.97
, pp. 141-151
-
-
Pelissier, T.1
Tutois, S.2
Tourmente, S.3
Deragon, J.M.4
Picard, G.5
-
67
-
-
0035058360
-
Evolution of genome size: New approaches to an old problem
-
Petrov DA: Evolution of genome size: new approaches to an old problem. Trends Genet 17:23-28 (2001).
-
(2001)
Trends Genet
, vol.17
, pp. 23-28
-
-
Petrov, D.A.1
-
68
-
-
0029002509
-
Transposable elements are stable structural components of Drosophila melanogaster heterochromatin
-
Pimpinelli S, Berloco M, Fanti L, Dimitri P, Bonaccorsi S, Marchetti E, Caizzi R, Caggese C, Gatti M: Transposable elements are stable structural components of Drosophila melanogaster heterochromatin. Proc Natl Acad Sci USA 92:3804-3808 (1995).
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3804-3808
-
-
Pimpinelli, S.1
Berloco, M.2
Fanti, L.3
Dimitri, P.4
Bonaccorsi, S.5
Marchetti, E.6
Caizzi, R.7
Caggese, C.8
Gatti, M.9
-
69
-
-
3342926079
-
Unique mammalian tRNA-derived repetitive elements in dermopterans: The t-SINE family and its retrotransposition through multiple sources
-
Piskurek O, Nikaido M, Boeadi, Baba M, Okada N: Unique mammalian tRNA-derived repetitive elements in dermopterans: the t-SINE family and its retrotransposition through multiple sources. Mol Biol Evol 20:1659-1668 (2003).
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1659-1668
-
-
Piskurek, O.1
Nikaido, M.2
Boeadi3
Baba, M.4
Okada, N.5
-
70
-
-
0033215297
-
Identification and characterization of nuclear matrix-attachment regions in the human serpin gene cluster at 14q32.1
-
Rollini P, Namciu SJ, Marsden MD, Fournier REK: Identification and characterization of nuclear matrix-attachment regions in the human serpin gene cluster at 14q32.1. Nucleic Acids Res 27:3779-3791 (1999).
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 3779-3791
-
-
Rollini, P.1
Namciu, S.J.2
Marsden, M.D.3
Fournier, R.E.K.4
-
71
-
-
0037100664
-
Selective stimulation of translational expression by Alu RNA
-
Rubin CM, Kimura RH, Schmid CW: Selective stimulation of translational expression by Alu RNA. Nucleic Acids Res 30:3253-3261 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3253-3261
-
-
Rubin, C.M.1
Kimura, R.H.2
Schmid, C.W.3
-
73
-
-
0029685023
-
Alu: Structure, origin, evolution, significance, and function of one-tenth of human DNA
-
Schmid C: Alu: structure, origin, evolution, significance, and function of one-tenth of human DNA. Prog Nucl Acids Res Mol Biol 53:283-319 (1996).
-
(1996)
Prog Nucl Acids Res Mol Biol
, vol.53
, pp. 283-319
-
-
Schmid, C.1
-
74
-
-
0347364634
-
Activation of an LTR-retrotransposon by telomere erosion
-
Scholes DT, Kenny AE, Gamache ER, Mou Z, Curcio MJ: Activation of an LTR-retrotransposon by telomere erosion. Proc Natl Acad Sci USA 100:15736-15741 (2003).
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15736-15741
-
-
Scholes, D.T.1
Kenny, A.E.2
Gamache, E.R.3
Mou, Z.4
Curcio, M.J.5
-
75
-
-
0032774523
-
Genome system architecture and natural genetic engineering in evolution
-
Shapiro JA: Genome system architecture and natural genetic engineering in evolution. Ann NY Acad Sci 870:23-35 (1999).
-
(1999)
Ann NY Acad Sci
, vol.870
, pp. 23-35
-
-
Shapiro, J.A.1
-
76
-
-
0036962768
-
Genome organization and reorganization in evolution: Formatting for computation and function
-
Shapiro JA: Genome organization and reorganization in evolution: formatting for computation and function. Ann NY Acad Sci 981:111-134 (2002).
-
(2002)
Ann NY Acad Sci
, vol.981
, pp. 111-134
-
-
Shapiro, J.A.1
-
77
-
-
59449101243
-
Why repetitive DNA is essential for genome function
-
in press
-
Shapiro JA, Sternberg RV: Why repetitive DNA is essential for genome function. Biol Rev (in press 2004).
-
(2004)
Biol Rev
-
-
Shapiro, J.A.1
Sternberg, R.V.2
-
78
-
-
0032802198
-
Genealogy of families of SINEs in cetaceans and artiodactyls: The presence of a huge superfamily of tRNA(Glu)-derived families of SINEs
-
Shimamura M, Abe H, Nikaido M, Ohshima K, Okada N: Genealogy of families of SINEs in cetaceans and artiodactyls: the presence of a huge superfamily of tRNA(Glu)-derived families of SINEs. Mol Biol Evol 16:1046-1060 (1999).
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1046-1060
-
-
Shimamura, M.1
Abe, H.2
Nikaido, M.3
Ohshima, K.4
Okada, N.5
-
79
-
-
0141615769
-
Conserved fragments of transposable elements in intergenic regions: Evidence for wide-spread recruitment of MIR- and L2-derived sequences within the mouse and human genomes
-
Silva JC, Shabalina SA, Harris DG, Spouge JL, Kondrashovi AS: Conserved fragments of transposable elements in intergenic regions: evidence for wide-spread recruitment of MIR- and L2-derived sequences within the mouse and human genomes. Genet Res 82:1-18 (2003).
-
(2003)
Genet Res
, vol.82
, pp. 1-18
-
-
Silva, J.C.1
Shabalina, S.A.2
Harris, D.G.3
Spouge, J.L.4
Kondrashovi, A.S.5
-
80
-
-
0032429637
-
The BC200 RNA gene and its neural expression are conserved in Anthropoidea (primates)
-
Skyrabin BV, Kremerskothen J, Vassilacopoulou D, Disotell TR, Kapatinov VV, Jorka J, Brosius J: The BC200 RNA gene and its neural expression are conserved in Anthropoidea (primates). J Mol Evol 47:677-685 (1998).
-
(1998)
J Mol Evol
, vol.47
, pp. 677-685
-
-
Skyrabin, B.V.1
Kremerskothen, J.2
Vassilacopoulou, D.3
Disotell, T.R.4
Kapatinov, V.V.5
Jorka, J.6
Brosius, J.7
-
81
-
-
0347635470
-
Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF: Effects on steroidogenesis and oncogenesis
-
Song X, Sui A, Garen A: Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF: Effects on steroidogenesis and oncogenesis. Proc Natl Acad Sci USA 101:621-626 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 621-626
-
-
Song, X.1
Sui, A.2
Garen, A.3
-
82
-
-
0034999474
-
Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes
-
Speek M: Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol Cell Biol 21:1973-1985 (2001).
-
(2001)
Mol Cell Biol
, vol.21
, pp. 1973-1985
-
-
Speek, M.1
-
83
-
-
0030174962
-
The role of constrained self-organization in genome structural evolution
-
Sternberg RV: The role of constrained self-organization in genome structural evolution. Acta Biotheor 44:95-118 (1996).
-
(1996)
Acta Biotheor
, vol.44
, pp. 95-118
-
-
Sternberg, R.V.1
-
84
-
-
0034017434
-
Genomes and form. The case for teleomorphic recursivity
-
Sternberg RV: Genomes and form. The case for teleomorphic recursivity. Ann NY Acad Sci 901:224-236 (2000).
-
(2000)
Ann NY Acad Sci
, vol.901
, pp. 224-236
-
-
Sternberg, R.V.1
-
85
-
-
0036960274
-
On the roles of repetitive DNA elements in the context of a unified genomic-epigenetic system
-
Sternberg RV: On the roles of repetitive DNA elements in the context of a unified genomic-epigenetic system. Ann NY Acad Sci 981:154-188 (2002).
-
(2002)
Ann NY Acad Sci
, vol.981
, pp. 154-188
-
-
Sternberg, R.V.1
-
86
-
-
0342905062
-
Members of the SRY family regulate the human LINE retrotransposons
-
Tchénio T, Casella J-F, Heidmann T: Members of the SRY family regulate the human LINE retrotransposons. Nucleic Acids Res 28:411-415 (2000).
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 411-415
-
-
Tchénio, T.1
Casella, J.-F.2
Heidmann, T.3
-
87
-
-
0242287927
-
The eukaryotic genome: A system regulated at different hierarchical levels
-
van Driel R, Fransz PF, Verschure PJ: The eukaryotic genome: a system regulated at different hierarchical levels. J Cell Sci 116:4067-4075 (2003).
-
(2003)
J Cell Sci
, vol.116
, pp. 4067-4075
-
-
Van Driel, R.1
Fransz, P.F.2
Verschure, P.J.3
-
88
-
-
0029153564
-
The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
-
Vansant G, Reynolds WF: The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc Natl Acad Sci USA 92:8229-8233 (1995).
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8229-8233
-
-
Vansant, G.1
Reynolds, W.F.2
-
90
-
-
0242384184
-
B1 and related SINEs in mammalian genomes
-
Vassetzky NS, Ten OA, Kramerov DA: B1 and related SINEs in mammalian genomes. Gene 319:149-160 (2003).
-
(2003)
Gene
, vol.319
, pp. 149-160
-
-
Vassetzky, N.S.1
Ten, O.A.2
Kramerov, D.A.3
-
91
-
-
0023413830
-
Primate brain-specific cytoplasmic transcript of the Alu repeat family
-
Watson JB, Sutcliffe JG: Primate brain-specific cytoplasmic transcript of the Alu repeat family. Mol Cell Biol 7:3324-3327 (1987).
-
(1987)
Mol Cell Biol
, vol.7
, pp. 3324-3327
-
-
Watson, J.B.1
Sutcliffe, J.G.2
-
92
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins
-
Wyrick JJ, Aparicio JG, Chen T, Barnett JD, Jennings EG, Young RA, Bell SP, Aparicio OM: Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. Science 14:2357-2360 (2001).
-
(2001)
Science
, vol.14
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
93
-
-
0031985152
-
Apolipoprotein(a) gene enhancer resides within a LINE element
-
Yang Z, Bofelli D, Boonmark N, Schwartz K, Lawn R: Apolipoprotein(a) gene enhancer resides within a LINE element. J Biol Chem 273:891-897 (1998).
-
(1998)
J Biol Chem
, vol.273
, pp. 891-897
-
-
Yang, Z.1
Bofelli, D.2
Boonmark, N.3
Schwartz, K.4
Lawn, R.5
-
94
-
-
0033579468
-
Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation
-
Yates PA, Burman RW, Mummaneni P, Krussel S, Turker MS: Tandem B1 elements located in a mouse methylation center provide a target for de novo DNA methylation. J Biol Chem 274:36357-36361 (1999).
-
(1999)
J Biol Chem
, vol.274
, pp. 36357-36361
-
-
Yates, P.A.1
Burman, R.W.2
Mummaneni, P.3
Krussel, S.4
Turker, M.S.5
-
95
-
-
0033574638
-
A second gene encoding the mouse proteosome activator b subunit is part of a LINE1 element and is driven by a LINE1 promoter
-
Zaiss DMW, Kloetzel P-M: A second gene encoding the mouse proteosome activator b subunit is part of a LINE1 element and is driven by a LINE1 promoter. J Mol Biol 287:829-835 (1999).
-
(1999)
J Mol Biol
, vol.287
, pp. 829-835
-
-
Zaiss, D.M.W.1
Kloetzel, P.-M.2
-
96
-
-
0035144014
-
Tempo and mode of evolution in an orthologous Can SINE
-
Zehr SM, Nedbal MA, Flynn JJ: Tempo and mode of evolution in an orthologous Can SINE. Mamm Genome 12:38-44 (2001).
-
(2001)
Mamm Genome
, vol.12
, pp. 38-44
-
-
Zehr, S.M.1
Nedbal, M.A.2
Flynn, J.J.3
-
97
-
-
1842681942
-
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
-
Zhang X, Wessler SR: Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc Natl Acad Sci USA 101:5589-5594 (2004).
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5589-5594
-
-
Zhang, X.1
Wessler, S.R.2
-
98
-
-
0036847093
-
Centromeric retroelements and satellites interact with maize kinetochore protein CENH3
-
Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK: Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell 14:2825-2836 (2002).
-
(2002)
Plant Cell
, vol.14
, pp. 2825-2836
-
-
Zhong, C.X.1
Marshall, J.B.2
Topp, C.3
Mroczek, R.4
Kato, A.5
Nagaki, K.6
Birchler, J.A.7
Jiang, J.8
Dawe, R.K.9
-
99
-
-
0034696570
-
A novel Pax-6 binding site in rodent B1 repetitive elements: Coevolution between developmental regulation and repeated elements?
-
Zhou Y-H, Zheng JB, Gu X, Li W-H, Saunders GF: A novel Pax-6 binding site in rodent B1 repetitive elements: coevolution between developmental regulation and repeated elements? Gene 245:319-328 (2000).
-
(2000)
Gene
, vol.245
, pp. 319-328
-
-
Zhou, Y.-H.1
Zheng, J.B.2
Gu, X.3
Li, W.-H.4
Saunders, G.F.5
-
100
-
-
0036852096
-
Novel Pax6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation
-
Zhou Y-H, Zheng JB, Gu X, Saunders GF, Yung W-KA: Novel Pax6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation. Genome Res 12:1716-1722 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 1716-1722
-
-
Zhou, Y.-H.1
Zheng, J.B.2
Gu, X.3
Saunders, G.F.4
Yung, W.-K.A.5
-
101
-
-
0038609020
-
Examination of sequence homology between human chromosome 20 and the mouse genome: Intense conservation of many genomic elements
-
Zhu L, Swergold GD, Seldin MF: Examination of sequence homology between human chromosome 20 and the mouse genome: intense conservation of many genomic elements. Hum Genet 113:60-70 (2003).
-
(2003)
Hum Genet
, vol.113
, pp. 60-70
-
-
Zhu, L.1
Swergold, G.D.2
Seldin, M.F.3
-
102
-
-
0036021705
-
Why so many noncoding nucleotides? The eukaryote genome as an epigenetic machine
-
Zuckerkandl E: Why so many noncoding nucleotides? The eukaryote genome as an epigenetic machine. Genetica 115:105-129 (2002).
-
(2002)
Genetica
, vol.115
, pp. 105-129
-
-
Zuckerkandl, E.1
|