Genomes and form. The case for teleomorphic recursivity

Annals of the New York Academy of Sciences

Volumn 901, Issue , 2000, Pages 224-236

  Von Sternberg, Richard ^a  

^a SMITHSONIAN INSTITUTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN;

BIOCHEMISTRY; CELL STRUCTURE; CHROMATIN; CHROMOSOME; CONFERENCE PAPER; DNA SEQUENCE; EVOLUTION; GENE MUTATION; GENETIC ENGINEERING; GENOME; GENOTYPE; GERM LINE; HERITABILITY; METABOLISM; MOLECULAR GENETICS; MUTATION; PHENOTYPE; SOMATIC CELL GENETICS;

EID: 0034017434     PISSN: 00778923     EISSN: None     Source Type: Book Series    
DOI: 10.1111/j.1749-6632.2000.tb06281.x     Document Type: Conference Paper

References (48)

1. 1. UMEREZ, J. 1995. Semantic closure: a guiding notion to ground artificial life. In Advances in Artificial Life. F. Morán, A. Moreno, J.J. Merelo & P. Chacón, Eds. :77-94. Springer-Verlag. Berlin.
2. 2. PATTEE, H.H. 1995. Artificial life needs a real epistemology. In Advances in Artificial Life. F. Morán, A. Moreno, J.J. Merelo & P. Chacón, Eds. :23-38. Springer-Verlag. Berlin.
3. 3. HAMEROFF, S.R. 1987. Ultimate Computing: Biomolecular Consciousness and Nano-Technology. North-Holland. New York.
4. 4. SHAPIRO, J.A. 1991. Genomes as smart systems. Genetica 84: 3-4.
5. 5. SHAPIRO, J.A. 1992. Natural genetic engineering in evolution. Genetica 86: 99-111.
6. 6. SHAPIRO, J.A. 1997. Genome organization, natural genetic engineering, and adaptive mutation. TIG 13: 98-104.
7. 7. VON STERNBERG, R.M., G.E. NOVICK, G.-P. GAO & R.J. HERRERA. 1992. Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA. Genetica 86: 215-246.
8. 8. VON STERNBERG, R. 1996. The role of constrained self-organization in genome structural evolution. Acta Biotheoretica 44: 95-118.
9. 9. VON STERNBERG, R. 1996. Genome self-modification and cellular control of genome reorganization. Riv. Biol./Biol. Forum 89: 445-484.
10. 10. PENNISI, E. 1998. How the genome readies itself for evolution. Science 281: 1131-1134.
11. 11. YAO, M.-C. 1996. Programmed DNA deletions in Tetrahymena: mechanisms and implications. TIG 12: 26-30.
12. 12. JABLONKA, E. & M.J. LAMB. 1995. Epigenetic Inheritance and Evolution: The Lamarckian Dimension. Oxford University Press. Oxford.
13. 13. JORGENSEN, R. 1993. The germinal inheritance of epigcnetic information in plants. Philos. Trans. Roy. Soc. Lond. Ser. B 339: 173-181.
14. 14. JORGENSEN, R. 1994. Developmental significance of epigenetic imposition on the plant genome: a paragenetic function for chromosomes. Dev. Genet. 15: 523-532.
15. 15. MATZKE, M. & A.J.M. MATZKE. 1993. Genomic imprinting in plants: parental effects and trans-inactivation phenomena. Annu. Rev. Plant Physiol. Mol. Biol. 44: 53-76.
16. 16. MEYER, P. & H. SAEDLER. 1996. Homology-dependent gene silencing in plants. Annu. Rev. Plant Physiol. Mol. Biol. 47: 23-48.
17. 17. PIRROTTA, V. 1997. Chromatin-silencing mechanisms in Drosophila maintain patterns of gene expression. TIG 13: 314-318.
18. 18. MCCLINTOCK, B. 1978. Mechanisms that rapidly reorganize the genome. In The Discovery and Characterization of Transposable Elements. J.A. Moore, Ed. :593-616. Garland. New York.
19. 19. MCCLINTOCK, B. 1984. The significance of responses of the genome to challenge. Science 226: 792-801.
20. 20. KIDWELL, M.G. & D. LISCH. 1997. Transposable elements as sources of variation in animals and plants. Proc. Natl. Acad. Sci. USA 94: 1704-1711.
21. 21. BERNARDI, G. 1995. The human genome: organization and evolutionary history. Annu. Rev. Genet. 29: 445-476.
22. 22. BOULIKAS, T. 1995. Chromatin domains and prediction of MAR sequences. Int. Rev. Cytol. 162A: 279-388.
23. 23. VOGT, P. 1990. Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code". Hum. Genet. 84: 301-346.
24. 24. TOMILIN, N.V. 1999. Control of genes by mammalian retroposons. Int. Rev. Cytol. 186: 1-48.
25. 25. LABRADOR, M. & V.G. CORCES. 1997. Transposable element-host interactions: regulation of insertion and excision. Annu. Rev. Genet. 31: 381-404.
26. 26. GATTI, M, & S. PIMPINELLI. 1992. Functional elements in Drosophila melanogaster heterochromatin. Annu. Rev. Genet. 26: 239-275.
27. 27. MANUELIDIS, L. 1990. A view of interphase chromosomes. Science 250: 1533-1540.
28. 28. WEILER, K.S. & B.T. WAKIMOTO. 1995. Heterochromatin and gene expression in Drosophila. Annu. Rev. Genet. 29: 577-605.
29. 29. SHERMAN, J.M. & L. PILLUS. 1997. An uncertain silence. TIG 13: 308-313.
30. 30. ZUCKERKANDL, E. 1997. Junk DNA and sectorial gene repression. Gene 205: 323-343.
31. 31. KLAR, A.J.S. 1998. Propagating epigenetic states through meiosis: where Mendel's gene is more than a DNA moiety. TIG 14: 299-301.
32. 32. DOVER, G.A. 1982. Molecular drive: a cohesive mode of species evolution. Nature 299: 111-117.
33. 33. HOLMQUIST, G.P. 1989. Evolution of chromosome bands: molecular ecology of non-coding DNA. J. Mol. Evol. 28: 469-486.
34. 34. LÖNNIG, W.-E. & H. SAEDLER. 1997. Plant transposons: contributors to evolution? Gene 205: 245-253.
35. 35. HOLMQUIST, G.P. 1992. Chromosome bands, their chromatin flavors, and their functional features. Am. J. Hum. Genet. 51: 17-37.
36. 36. HOLMQUIST, G.P. 1994. Chromatin self-organization by mutation bias. J. Mol. Evol. 39: 436-438.
37. 37. HOLMQUIST, G.P. & J.P. FILIPSKI. 1994. Organization of mutations along the genome: a prime determinant of genome evolution. TREE 9: 65-69.
38. 38. BROOKS, D.R. & E.O. WILEY. 1988. Evolution as Entropy. University of Chicago Press. Chicago, IL.
39. 39. SALTHE, S.N. 1993. Development and Evolution: Complexity and Change in Biology. MIT Press. Cambridge, MA.
40. 40. BRITTEN, R.J. 1997. Mobile elements inserted in the distant past have taken on important functions. Gene 205: 177-182.
41. 41. PARDUE, M.L., O.N. DANILEVSKAYA, K. LOWENHAUPT, F. SLOT, & K.L. TRAVERSE. 1996. Drosophila telomeres: new views on chromosome evolution. TIG 12: 48-52.
42. 42. BRINK, R.A. 1960. Paramutation and chromosome organization. Q. Rev. Biol. 35: 120-137.
43. 43. HOLLICK, J.B., J.E. DORWEILER & V.L. CHANDLER. 1997. Paramutation and related allelic interactions. TIG 13: 302-308.
44. 44. HENIKOFF, S. & M.A. MATZKE. 1997. Exploring and explaining epigenetic effects. TIG 13: 293-295.
45. 45. MILOT, E., P. FRASER & F. GROSVELD. 1996. Position effects and genetic disease. TIG 12: 123-126.
46. 46. JENSEN, S., M.-P. GASSAMA, & T. HEIDMANN. 1999. Taming of transposable elements by homology-dependent gene silencing. Nature Genetics 21: 209-212.
47. 47. BHALLA, U.S. & R. IYENGAR. 1999. Emergent properties of networks of biological signalling pathways. Science 283: 381-387.
48. 48. TRAUB, P. & R.L. SHOEMAN. 1994. Intermediate filament proteins: cytoskeletal elements with gene-regulatory function? Int. Rev. Cytol. 154: 1-103.