Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India

Journal of Bacteriology

Volumn 182, Issue 11, 2000, Pages 3219-3227

  Mukhopadhyay, Asish K ^a   Kersulyte, Dangeruta ^a   Jeong, Jin Yong ^a   Datta, Simanti ^b   Ito, Yoshiyuki ^a,c   Chowdhury, Abhijit ^b   Chowdhury, Sujit ^b   Santra, Amal ^b   Bhattacharya, Sujit K ^b   Azuma, Takeshi ^c   Nair, G Balakrish ^b   Berg, Douglas E ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b INSTITUTE OF POST GRADUATE MEDICAL EDUCATION AND RESEARCH   (India)

^c UNIVERSITY OF FUKUI   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; BACTERIUM ISOLATION; GENOTYPE; GRAM NEGATIVE INFECTION; HELICOBACTER PYLORI; INDIAN OCEAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

ADULT; AGED; ANTI-BACTERIAL AGENTS; ANTIGENS, BACTERIAL; BACTERIAL PROTEINS; BASE SEQUENCE; DRUG RESISTANCE, MICROBIAL; EVOLUTION, MOLECULAR; FEMALE; GENES, BACTERIAL; GENETIC MARKERS; GENOTYPE; GEOGRAPHY; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; INDIA; MALE; METRONIDAZOLE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID; STOMACH DISEASES; VARIATION (GENETICS);

EID: 12944316453     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.11.3219-3227.2000     Document Type: Article

References (66)

1. Abraham, P., and S. J. Bhatia. 1997. Position paper on Helicobacter pylori in India. Indian J. Gastroenterol. 16(Suppl. 1):S29-S33.
2. Abraham, P., N. Sandhu, and S. R. Naik. 1997. In vitro sensitivity of Helicobacter pylori in India. Indian J. Gastroenterol. 16(Suppl. 1):S20-S21.
3. Achtman, M., T. Azuma, D. E. Berg, Y. Ito, G. Morelli, Z. J. Pan, S. Suerbaum, S. A. Thompson, A. van der Ende, and L. J. van Doorn. 1999. Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol. Microbiol. 32:459-470.
4. Akopyants, N. S., S. W. Clifton, D. Kersulyte, J. E. Crabtree, B. E. Youree, C. A. Reece, N. O. Bukanov, E. S. Drazek, B. A. Roe, and D. E. Berg. 1998. Analyses of the cag pathogenicity island of Helicobacter pylori. Mol. Microbiol. 28:37-54.
5. Akopyanz, N., N. O. Bukanov, T. U. Westblom, S. Kresovich, and D. E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
6. Alm, R. A., L. S. Ling, D. T. Moir, B. L. King, E. D. Brown, P. C. Doig, D. R. Smith, B. Noonan, B. C. Guild, B. L. deJonge, G. Carmel, P. J. Tummino, A. Caruso, M. Uria-Nickelsen, D. M. Mills, C. Ives, R. Gibson, D. Merberg, S. D. Mills, Q. Jiang, D. E. Taylor, G. F. Vovis, and T. J. Trust. 1999. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397:176-180.
7. Asahi, M., T. Azuma, S. Ito, Y. Ito, H. Suto, Y. Nagai, M. Tsubokawa, Y. Tohyama, S. Maeda, M. Omata, T. Suzuki, and C. Sasakawa. 2000. Helicobacter pylori CagA protein delivered to gastric epithelial cells can be tyrosine phosphorylated. J. Exp. Med. 191:593-602.
8. Atherton, J. C. 1998. H. pylori virulence factors. Br. Med. Bull. 54:105-120.
9. Atherton, J. C., T. L. Cover, R. J. Twells, M. R. Morales, C. J. Hawkey, and M. J. Blaser. 1999. Simple and accurate PCR-based system for typing vacuolating cytotoxin alleles of Helicobacter pylori. J. Clin. Microbiol. 37:2979-2982.
10. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). 1993. Current Protocols in Molecular Biology. Greene Publishing and Wiley-Interscience, New York, N.Y.
11. Bamford, K. B., J. Bickley, J. S. Collins, B. T. Johnston, S. Potts, V. Boston, R. J. Owen, and J. M. Sloan. 1993. Helicobacter pylori: comparison of DNA fingerprints provides evidence for intrafamilial infection. Gut 34:1348-1350.
12. Berg, D. E., R. H. Gilman, J. Lelwala-Guruge, Y. Valdez, J. Watanabe, J. Miyagi, N. S. Akopyants, K. Srivastava, A. Ramirez-Ramos, T. H. Yoshiwara, S. Recavarren, and R. Leon-Barua. 1997. Helicobacter pylori populations in Peruvian patients. Clin. Infect. Dis. 25:996-1002.
13. Bhattacharyya, N. P., P. Basu, M. Das, S. Pramanik, R. Banerjee, B. Roy, S. Roychoudhury, and P. P. Majumder. 1999. Negligible male gene flow across ethnic boundaries in India, revealed by analysis of Y-chromosomal DNA polymorphisms. Genome Res. 9:711-719.
14. Blaser, M. J. 1998. Helicobacters are indigenous to the human stomach: duodenal ulceration is due to changes in gastric microecology in the modern era. Gut 43:721-727.
15. Blaser, M. J. 1999. Hypothesis: the changing relationships of Helicobacter pylori and humans: implications for health and disease. J. Infect. Dis. 179: 1523-1530.
16. Cavalli-Sforza, L. L., P. Menozzi, and A. Piazza. 1994. The history and geography of human genes. Princeton University Press, Princeton, N.J.
17. Censini, S., C. Lange, Z. Xiang, J. E. Crabtree, P. Ghiara, M. Borodovsky, R. Rappuoli, and A. Covacci. 1996. cag, a pathogenicity island of Helicobacter pylori encodes type I-specific and disease-associated virulence factors. Proc. Natl. Acad. Sci. USA 93:14648-14653.
18. Clemens, J., M. J. Albert, M. Rao, F. Qadri, S. Huda, B. Kay, F. P. van Loon, D. Sack, B. A. Pradhan, and R. B. Sack. 1995. Impact of infection by Helicobacter pylori on the risk and severity of endemic cholera. J. Infect. Dis. 171:1653-1656.
19. Dale, A., J. E. Thomas, M. K. Darboe, W. A. Coward, M. Harding, and L. T. Weaver. 1998. Helicobacter pylori infection, gastric acid secretion, and infant growth. J. Pediatr. Gastroenterol. Nutr. 26:393-397.
20. Dhar, A., and M. P. Sharma. 1997. Lacunae in data on Helicobacter pylori from India. Indian J. Gastroenterol. 16(Suppl. 1):S13-S15.
21. Diamond, J. 1997. Guns, germs, and steel: the fates of human societies. W. W. Norton and Co., New York, N.Y.
22. Dimola, S., and M. L. Caruso. 1999. Helicobacter pylori in animals affecting the human habitat through the food chain. Anticancer Res. 19:3889-3894.
23. Doig, P., B. L. de Jonge, R. A. Alm, E. D. Brown, M. Uria-Nickelsen, B. Noonan, S. D. Mills, P. Tummino, G. Carmel, B. C. Guild, D. T. Moir, G. F. Vovis, and T. J. Trust. 1999. Helicobacter pylori physiology predicted from genomic comparison of two strains. Microbiol. Mol. Biol. Rev. 63:675-707.
24. Dominici, P., S. Bellentani, A. R. Di Biase, G. Saccoccio, A. Le Rose, F. Masutti, L. Viola, F. Balli, C. Tiribelli, R. Grilli, M. Fusillo, E. Grossi. 1999. Familial clustering of Helicobacter pylori infection: population based study. BMJ 319:537-540.
25. Dore, M. P., A. R. Sepulveda, M. S. Osato, G. Realdi, and D. Y. Graham. 1999. Helicobacter pylori in sheep milk. Lancet 354:132.
26. Dubois, A., D. E. Berg, E. T. Incecik, N. Fiala, L. M. Heman-Ackah, G. I. Perez-Perez, and M. J. Blaser. 1996. Transient and persistent infection of nonhuman primates with Helicobacter pylori: implications for human disease. Infect. Immun. 64:2885-2891.
27. Ewald, P. 1994. Evolution of infectious disease. Oxford University Press, New York, N.Y.
28. Feil, E. J., M. C. Maiden, M. Achtman, and B. G. Spratt. 1999. The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis. Mol. Biol. Evol. 16:1496-1502.
29. Garner, J. A., and T. L. Cover. 1995. Analysis of genetic diversity in cytotoxin-producing and non-cytotoxin-producing Helicobacter pylori strains. J. Infect. Dis. 172:290-293.
30. Goodwin, A., D. Kersulyte, G. Sisson, S. J. O. Veldhuyzen van Zanten, D. E. Berg, and P. S. Hoffman. 1998. Metronidazole resistance in Helicobacter pylori is due to null mutations in a gene (rdxA) that encodes an oxygen-insensitive NADPH nitroreductase. Mol. Microbiol. 28:383-393.
31. Guttman, D. S., and D. E. Dykhuizen. 1994. Detecting selective sweeps in naturally occurring Escherichia coli. Genetics 138:993-1003.
32. Han, S. R., H. J. Schreiber, S. Bhakdi, M. Loos, and M. J. Maeurer. 1998. vacA genotypes and genetic diversity in clinical isolates of Helicobacter pylori. Clin. Diagn. Lab. Immunol. 5:139-145.
33. Ilver, D., A. Arnqvist, J. Ogren, I.-M. Frick, D. Kersulyte, E. T. Incecik, D. E. Berg, A. Covacci, L. Engstrand, and T. Boren. 1998. The Helicobacter pylori Lewis b blood group antigen binding adhesin revealed by retagging. Science 279:373-377.
34. Ito, Y., T. Azuma, S. Ito, H. Miyaji, M. Hirai, Y. Yamazaki, F. Sato, T. Kato, Y. Kohli, and M. Kuriyama. 1997. Analysis and typing of the vacA gene from cagA-positive strains of Helicobacter pylori isolated in Japan. J. Clin. Microbiol. 35:1710-1714.
35. Ito, Y., T. Azuma, S. Ito, H. Suto, H. Miyaji, Y. Yamazaki, Y. Kohli, and M. Kuriyama. 1998. Full-length sequence analysis of the vacA gene from cytotoxic and noncytotoxic Helicobacter pylori. J. Infect. Dis. 178:1391-1398.
36. Jain, A. K., and V. M. Dayal. 1997. Helicobacter pylori recolonization and ulcer relapse after its eradication in India. Indian J. Gastroenterol. 16(Suppl. 1):S22-S24.
37. Jin, L., P. A. Underhill, V. Doctor, R. W. Davis, P. Shen, L. L. Cavalli-Sforza, and P. J. Oefner. 1999. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Proc. Natl. Acad. Sci. USA 96:3796-3800.
38. Jorgensen, M., G. Daskalopoulos, V. Warburton, H. M. Mitchell, and S. L. Hazell. 1996. Multiple strain colonization and metronidazole resistance in Helicobacter pylori-infected patients: identification from sequential and multiple biopsy specimens. J. Infect. Dis. 174:631-635.
39. Kersulyte, D., N. S. Akopyants, S. W. Clifton, B. A. Roe, and D. E. Berg. 1998. Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori. Gene 223: 175-186.
40. Kersulyte, D., H. Chalkauskas, and D. E. Berg. 1999. Emergence of recombinant strains of Helicobacter pylori during human infection. Mol. Microbiol. 31:31-43.
41. Kersulyte, D., A. K. Mukhopadhyay, B. Velapatiño, W. Su, Z. Pan, C. Garcia, V. Hernandez, Y. Valdez, R. S. Mistry, R. H. Gilman, Y. Yuan, H. Gao, T. Alarcón, M. López-Brea, G. B. Nair, A. Chowdhury, S. Datta, M. Shirai, T. Nakazawa, R. Ally, I. Segal, B. C. Y. Wong, S. K. Lam, F. Ó. Olfat, T. Borén, L. Engstrand, O. Torres, R. Schneider, J. E. Thomas, S. Czinn, and D. E. Berg. 2000. Differences in genotypes of Helicobacter pylori from different human populations. J. Bacteriol. 182:3210-3218.
42. Majumder, P. P., B. Roy, S. Banerjee, M. Chakraborty, B. Dey, N. Mukherjee, M. Roy, P. G. Thakurta, and S. K. Sil. 1999. Human-specific insertion/ deletion polymorphisms in Indian populations and their possible evolution-ary implications. Eur. J. Hum. Genet. 7:435-446.
43. McNeil, W. H. 1976. Plagues and peoples. Anchor Press/Doubleday, Garden City, N.Y.
44. Misra, S. P., V. Misra, and M. Dwivedi. 1998. Proceedings of the First National Workshop on Helicobacter pylori: the Indian scenario. Indian J. Gastroenterol. 17:114-115.
45. Pagliaccia, C., M. de Bernard, P. Lupetti, X. Ji, D. Burroni, T. L. Cover, E. Papini, R. Rappuoli, J. L. Telford, and J. M. Reyrat. 1998. The m2 form of the Helicobacter pylori cytotoxin has cell type-specific vacuolating activity. Proc. Natl. Acad. Sci. USA 95:10212-10217.
46. Pan, Z. J., D. E. Berg, R. W. van der Hulst, W. W. Su, A. Raudonikiene, S. D. Xiao, J. Dankert, G. N. Tytgat, and A. van der Ende. 1998. Prevalence of vacuolating cytotoxin production and distribution of distinct vacA alleles in Helicobacter pylori from China. J. Infect. Dis. 178:220-226.
47. Pan, Z. J., R. W. van der Hulst, M. Feller, S. D. Xiao, G. N. Tytgat, J. Dankert, and A. van der Ende. 1997. Equally high prevalences of infection with cagA-positive Helicobacter pylori in Chinese patients with peptic ulcer disease and those with chronic gastritis-associated dyspepsia. J. Clin. Microbiol. 35:1344-1347.
48. Parsonnet, J. 1999. Helicobacter and gastric adenocarcinoma, p. 372-408. In J. Parsonnet (ed.). Microbes and malignancy: infection as a cause of human cancers. Oxford University Press, New York, N.Y.
49. Peek, R. M., Jr., S. A. Thompson, J. P. Donahue, K. T. Tham, J. C. Atherton, M. J. Blaser, and G. G. Miller. 1998. Adherence to gastric epithelial cells induces expression of a Helicobacter pylori gene, iceA, that is associated with clinical outcome. Proc. Assoc. Am. Physicians 110:531-544.
50. Sarker, S. A., M. M. Rahman, D. Mahalanabis, P. K. Bardhan, P. Hildebrand, C. Beglinger, and K. Gyr. 1995. Prevalence of Helicobacter pylori infection in infants and family contacts in a poor Bangladesh community. Dig. Dis. Sci. 40:2669-2672.
51. Segal, E. D., J. Cha, J. Lo, S. Falkow, and L. S. Tompkins. 1999. Altered states: involvement of phosphorylated CagA in the induction of host cellular growth changes by Helicobacter pylori. Proc. Natl. Acad. Sci. USA 96: 14559-14564.
52. Sharma, M. P. 1999. Duodenal ulcer and Helicobacter pylori: presidential oration, Indian Society of Gastroenterology. Indian J. Gastroenterol. 18: 51-53.
53. Smith, J. M., N. H. Smith, M. O'Rourke, and B. G. Spratt. 1993. How clonal are bacteria? Proc. Natl. Acad. Sci. USA 90:4384-4388.
54. Suerbaum, S., J. M. Smith, K. Bapumia, G. Morelli, N. H. Smith, E. Kuntsmann, I. Dyrek, and M. Achtman. 1998. Free recombination within Helicobacter pylori. Proc. Natl. Acad. Sci. USA 95:12619-12624.
55. Taylor, N. S., J. G. Fox, N. S. Akopyants, D. E. Berg, N. Thompson, B. Shames, L. Yan, E. Fontham, F. Janney, F. M. Hunter, and P. Correa. 1995. Long term colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting. J. Clin. Microbiol. 33:918-923.
56. Tee, W., J. Lambert, R. Smallwood, M. Schembri, B. C. Ross, and B. Dwyer. 1992. Ribotyping of Helicobacter pylori from clinical specimens. J. Clin. Microbiol. 30:1562-1567.
57. Tomb, J. F., O. White, A. R. Kerlavage, R. A. Clayton, G. G. Sutton, R. D. Fleischmann, K. A. Ketchum, H. P. Klenk, S. Gill, B. A. Dougherty, K. Nelson, J. Quackenbush, L. Zhou, E. F. Kirkness, S. Peterson, B. Loftus, D. Richardson, R. Dodson, H. G. Khalak, A. Glodek, K. McKenney, L. M. Fitzgerald, N. Lee, M. D. Adams, E. K. Hickey, D. E. Berg, J. D. Gocayne, T. R. Utterback, J. D. Peterson, J. M. Kelley, M. D. Cotton, J. M. Weidman, C. Fujii, C. Bowman, L. Watthey, E. Wallin, W. S. Hayes, M. Borodovsky, P. D. Karp, H. O. Smith, C. M. Fraser, and J. C. Venter. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori Nature 388: 539-547.
58. van der Ende, A., Z. J. Pan, A. Bart, R. W. van der Hulst, M. Feller, S. D. Xiao, G. N. Tytgat, and J. Dankert. 1998. cagA-positive Helicobacter pylori populations in China and The Netherlands are distinct. Infect. Immun. 66: 1822-1826.
59. van der Wouden, E. J., J. C. Thijs, A. A. van Zwet, and J. H. Kleibeuker. 2000. Review article: nitroimidazole resistance in Helicobacter pylori. Aliment. Pharmacol. Ther. 14:7-14.
60. van Doorn, L. J., C. Figueiredo, F. Megraud, S. Pena, P. Midolo, D. M. Queiroz, F. Carneiro, B. Vanderborght, M. D. Pegado, R. Sanna, W. De Boer, P. M. Schneeberger, P. Correa, E. K. Ng, J. Atherton, M. J. Blaser, and W. G. Quint. 1999. Geographic distribution of vacA allelic types of Helicobacter pylori. Gastroenterology 116:823-830.
61. van Doorn, L. J., C. Figueiredo, R. Sanna, A. Plaisier, P. Schneeberger, W. de Boer, and W. Quint. 1998. Clinical relevance of the cagA, vacA, and iceA status of Helicobacter pylori. Gastroenterology 115:58-66.
62. van Doorn, L. J., C. Figueiredo, R. Sanna, M. J. Blaser, and W. G. Quint. 1999. Distinct variants of Helicobacter pylon cagA are associated with vacA subtypes. J. Clin. Microbiol. 37:2306-2311.
63. Watkins, W. S., M. Bamshad, M. E. Dixon, B. Bhaskara Rao, J. M. Naidu, P. G. Reddy, B. V. Prasad, P. K. Das, P. C. Reddy, P. B. Gai, A. Bhanu, Y. S. Kusuma, J. K. Lum, P. Fischer, and L. B. Jorde. 1999. Multiple origins of the mtDNA 9-bp deletion in populations of South India. Am. J. Phys. Anthropol. 109:147-158.
64. Westblom, T. U., S. J. Czinn, and J. G. Nedrud. 1999. Gastroduodenal disease and Helicobacter pylori: pathophysiology, diagnosis and treatment. Curr. Top. Microbiol. Immunol. 241:1-313.
65. Xiang, Z., S. Censini, P. F. Bayeli, J. L. Telford, N. Figura, R. Rappuoli, and A. Covacci. 1995. Analysis of expression of CagA and VacA virulence factors in 43 strains of Helicobacter pylori reveals that clinical isolates can be divided into two major types and that CagA is not necessary for expression of the vacuolating cytotoxin. Infect. Immun. 63:94-98.
66. Yamaoka, Y., T. Kodama, K. Kashima, D. Y. Graham, and A. R. Sepulveda. 1998. Variants of the 3′ region of the cagA gene in Helicobacter pylori isolates from patients with different H. pylori-associated diseases. J. Clin. Microbiol. 36:2258-2263.