Binding of Cdc48p to a ubiquitin-related UBX domain from novel yeast proteins involved in intracellular proteolysis and sporulation

Yeast

Volumn 21, Issue 2, 2004, Pages 127-139

  Decottignies, Anabelle ^a   Evain, Aude ^a   Ghislain, Michel ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

Author keywords

AAA ATPase; Cdc48p; Saccharomyces cerevisiae; Ubiquitin dependent degradation; UBX domain

Indexed keywords

ADENOSINE TRIPHOSPHATASE; PROTEASOME; SACCHAROMYCES CEREVISIAE PROTEIN; UBIQUITIN;

ARTICLE; CELL NUCLEUS MEMBRANE; COMPLEX FORMATION; CONTROLLED STUDY; ENZYME ACTIVITY; GENE DELETION; IN VITRO STUDY; MEMBRANE FUSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; SPOROGENESIS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CARRIER PROTEINS; CELL CYCLE PROTEINS; DNA, FUNGAL; MEMBRANE PROTEINS; MOLECULAR CHAPERONES; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; POLYMERASE CHAIN REACTION; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; TWO-HYBRID SYSTEM TECHNIQUES; UBIQUITIN;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 1242341446     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.1071     Document Type: Article

References (39)

1. Acharya U, Jacobs R, Peters JM, et al. 1995. The formation of Golgi stacks from vesiculated Golgi membranes requires two distinct fusion events. Cell 82: 895-904.
2. Bays NW, Wilhovsky SK, Goradia A, et al. 2001. HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins. Mol Biol Cell 12: 4114-4128.
3. Berben G, Dumont J, Gilliquet V, et al. 1991. The Ydp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7: 475-477.
4. UFD1/NPL4 chaperone (segregase) in ERAD of OLE1 and other substrates. EMBO J 21: 615-621.
5. Buchberger A, Howard MJ, Proctor M, Bycroft M. 2001. The UBX-domain: a widespread ubiquitin-like module. J Mol Biol 307: 17-24.
6. Chen DC, Yang BC, Kuo TT. 1992. One-step transformation of yeast in stationary phase. Curr Genet 21: 83-84.
7. Dai RM, Chen E, Longo DL, et al. 1998. Involvement of valosin-containing protein, an ATPase co-purified with IκBα and 26S proteasome, in ubiquitin-proteasome-mediated degradation of IκBα. J Biol Chem 273: 3562-3573.
8. Decottignies A, Zarzov P, Nurse P. 2001. In vivo localisation of fission yeast cyclin-dependent kinase cdc2p and cyclin B cdc13p during mitosis and meiosis. J Cell Sci 114: 2627-2640.
9. Durfee T, Becherer K, Chen PL, et al. 1993. The retinoblastoma protein associates with the protein phosphatase type 1 catalytic subunit. Genes Dev 7: 555-569.
10. Enenkel C, Lehmann A, Kloetzel PM. 1998. Subcellular distribution of proteasomes implicates a major location of protein degradation in the nuclear envelope-ER network in yeast. EMBO J 17: 6144-6154.
11. Fröhlich KU, Fries HW, Peters JM, Mecke D. 1995. The ATPase activity of purified CDC48p from Saccharomyces cerevisiae shows complex dependence on ATP, ADP and NADH concentrations and is completely inhibited by NEM. Biochem Biophys Res 1253: 25-32.
12. Ghislain M, Dohmen RJ, Levy F, Varshavsky A. 1996. Cdc48p interacts with Ufd3p, a WD repeat protein required for ubiquitin-mediated proteolysis in Saccharomyces cerevisiae. EMBO J 15: 4884-4899.
13. Golbik R, Lupas AN, Koretke KK, et al. 1999. The Janus face of the archaeal Cdc48/p97 homologue VAT: protein folding vs. unfolding. Biol Chem 380: 1049-1062.
14. Hetzer M, Meyer HH, Walther TC, et al. 2001. Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assembly. Nature Cell Biol 3: 1086-1091.
15. Hitchcock AL, Krebber H, Frietze S, et al. 2001. The conserved Np14 protein complex mediates proteasome-dependent membrane-bound transcription factor activation. Mol Cell Biol 12: 3226-3241.
16. Hoppe T, Matuschewski K, Rape M, et al. 2000. Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing. Cell 102: 577-586.
17. Jarosch E, Taxis C, Volkwein C, et al. 2002. Protein dislocation from the ER requires polyubiquitination and the AAA-ATPase Cdc48. Nature Cell Biol 4: 134-139.
18. Johnson ES, Ma PC, Ota IM, Varshavsky A. 1995. A proteolytic pathway that recognizes ubiquitin as a degradation signal. J Biol Chem 270: 17442-17456.
19. Koegl M, Hoppe T, Schlenker S, et al. 1999. A novel ubiquitination factor, E4, is involved in multi-ubiquitin chain assembly. Cell 96: 635-644.
20. Kondo H, Rabouille C, Newman R, et al. 1997. p47 is a co-factor for p97-mediated membrane fusion. Nature 388: 75-78.
21. Latterich M, Fröhlich KU, Schekman R. 1995. Membrane fusion and the cell cycle: Cdc48p participates in the fusion of ER membranes. Cell 82: 885-893.
22. Meyer HH, Kondo H, Warren G. 1998. The p47 co-factor regulates the ATPase activity of the membrane fusion protein, p97. FEBS Lett 437: 255-257.
23. Meyer HH, Shorter JG, Seemann J, et al. 2000. Complex of mammalian Ufd1 and Np14 links the AAA-ATPase, p97, to ubiquitin and nuclear transport pathways. EMBO J 19: 2181-2192.
24. Mumberg D, Müller R, Funk M. 1994. Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression. Nucleic Acids Res 22: 5767-5768.
25. Niedenthal RK, Riles L, Johnston M, Hegemann JH. 1996. Green fluorescent protein as a marker for gene expression and subcellular localization in budding yeast. Yeast 12: 773-786.
26. Patel S, Latterich M. 1998. The AAA team: related ATPases with diverse functions. Trends Cell Biol 8: 65-71.
27. Rabinovich E, Kerem A, Fröhlich KU, et al. 2002. AAA-ATPASE p97/Cdc48p, a cytosolic chaperone required for endoplasmic reticulum-associated protein degradation. Mol Cell Biol 22: 626-634.
28. Rabouille C, Levine TP, Peters JM, Warren G. 1995. An NSF-like ATPase, p97, and NSF mediate cisternal regrowth from mitotic Golgi fragments. Cell 82: 905-914.
29. UFD1/NPL4, a ubiquitin-selective chaperone. Cell 107: 667-677.
30. Rossanese OW, Soderholm J, Bevis BJ, et al. 1999. Golgi structure correlates with transitional endoplasmic reticulum organisation in Pichia pastoris and Saccharomyces cerevisiae. J Cell Biol 145: 69-81.
31. Roy L, Bergeron JJM, Lavoie C, et al. 2000. Role of p97 and syntaxin 5 in the assembly of transitional endoplasmic reticulum. Mol Biol Cell 11: 2529-2542.
32. Thompson JD, Higgins DG, Gibson TJ. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
33. Thoms S. 2002. Cdc48 can distinguish between native and non-native proteins in the absence of co-factors. FEBS Lett 520: 107-110.
34. Uetz P, Giot L, Cagney G, et al. 2000. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403: 601-603.
35. Wach A. 1996. PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae. Yeast 12: 259-265.
36. Ye Y, Meyer HH, Rapoport TA. 2001. The AAA-ATPase Cdc48p/p97 and its partners transport proteins from the ER into the cytosol. Nature 414: 652-656.
37. Winston F, Dollard C, Ricupero-Hovasse SL. 1995. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11: 53-55.
38. Yuan X, Shaw A, Zhang X, et al. 2001. Solution structure and interaction surface of the C-terminal domain from p47: a major p97-co-factor involved in SNARE disassembly. J Mol Biol 311: 255-263.
39. Zhang S, Guha S, Volkert FC. 1995. The Saccharomyces SHP1 gene, which encodes a regulator of phosphoprotein phosphatase 1 with differential effects on glycogen metabolism, meiotic differentiation, and mitotic cell cycle progression. Mol Cell Biol 15: 2037-2050.