Infection and RNA recombination of Brome mosaic virus in Arabidopsis thaliana

Virology

Volumn 318, Issue 2, 2004, Pages 482-492

  Dzianott, Aleksandra ^a   Bujarski, Jozef J ^a,b  

^a NORTHERN ILLINOIS UNIVERSITY   (United States)

^b INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

Arabidopsis host; Brome mosaic virus; RNA interference (RNAi); RNA recombination; RNA replication

Indexed keywords

VIRUS RNA;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; ECOTYPE; INOCULATION; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; RNA RECOMBINATION; RNA TRANSCRIPTION; TRANSGENIC PLANT; VIRION;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BROME MOSAIC VIRUS; BROMUS;

EID: 1242306250     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2003.09.007     Document Type: Article

References (67)

1. Ahlquist P. Bromovirus RNA replication and transcription. Curr. Opin. Genet. Dev. 2:1992;71-76.
2. Ahlquist P., Noueiry A.O., Lee W.M., Kushner D.B., Dye B.T. Host factors in positive-strand RNA virus genome replication. J. Virol. 77:2003;8181-8186.
3. Beclin C., Berthome R., Palauqui J.C., Tepfer M., Vaucheret H. Infection of tobacco or Arabidopsis plants by CMV counteracts systemic post-transcriptional silencing of nonviral (trans)genes. Virology. 252:1998;313-317.
4. Bousalem M., Douzery E.J., Fargette D. High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. J. Gen. Virol. 81:2000;243-255.
5. Brunt, A., Crabtree, K., Dallwitz, M., Gibbs, A., Watson, L., and Zurcher, E., 2003, Plant Viruses Online. Descriptions and Lists from the VIDE Database. http://image.fs.uidaho.edu/vide/refs.htm .
6. Bruyere A., Wantroba M., Flasinski S., Dzianott A., Bujarski J.J. Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus. J. Virol. 74:2000;4214-4219.
7. Bujarski J.J. Bromovirus isolation and RNA extraction. Foster G.D., Taylor S.C. Plant Virology Protocols: From Virus Isolation to Transgenic Resistance. 1998;Humana Press.
8. Bujarski J.J., Kaesberg P. Genetic recombination between RNA components of a multipartite plant virus. Nature. 321:1986;528-531.
9. Bujarski J.J., Nagy P.D. Targeting of the site of nonhomologous genetic recombination in Brome mosaic virus. Arch. Virol., Suppl. 9:1994;231-238.
10. Bujarski J.J., Nagy P.D., Flasinski S. Molecular studies of genetic RNA-RNA recombination in Brome mosaic virus. Adv. Virus Res. 43:1994;275-302.
11. Carpenter C., Simon A.E. Preparation of RNA in methods in molecular biology. Martinez-Zapater J.M., Salinas J. Arabidopsis Protocols. vol. 85:1998;85-89 Humana Press.
12. Chisholm S.T., Mahajan S.K., Whitham S.A., Yamamoto M.L., Carrington J.C. Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of Tobacco etch virus. Proc. Natl. Acad. Sci. U. S. A. 97:2000;489-494.
13. Chisholm S.T., Parra M.A., Anderberg R.J., Carrington J.C. Arabidopsis RTM1 and RTM2 genes function in phloem to restrict long-distance movement of Tobacco etch virus. Plant Physiol. 127:2001;1667-1675.
14. Choi Y.G., Dreher T.W., Rao A.L. tRNA elements mediate the assembly of an icosahedral RNA virus. Proc. Natl. Acad. Sci. U. S. A. 99:2002;655-660.
15. Clark M.F., Adams A.N. Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J. Gen. Virol. 34:1977;475-483.
16. Dalmay T., Hamilton A., Rudd S., Angell S., Baulcombe D.C. An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell. 101:2000;543-553.
17. Dalmay T., Horsefield R., Braunstein T.H., Baulcombe D.C. SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO J. 20:2001;2069-2078.
18. Dardick C.D., Golem S., Culver J.N. Susceptibility and symptom development in Arabidopsis thaliana to Tobacco mosaic virus is influenced by virus cell-to-cell movement. Mol. Plant-Microbe Interact. 13:2000;1139-1144.
19. Derrick K.S. Detection and identification of plant viruses by serologically specific microscopy. Phytopathology. 63:1973;441-444.
20. Desvoyes B., Scholthof H.B. Host-dependent recombination of a Tomato bushy stunt virus coat protein mutant yields truncated capsid subunits that form virus-like complexes which benefit systemic spread. Virology. 304:2002;434-442.
21. Diez J., Ishikawa M., Kaido M., Ahlquist P. Identification and characterization of a host protein required for efficient template selection in viral RNA replication. Proc. Natl. Acad. Sci. U. S. A. 97:2000;3913-3918.
22. Dzianott A., Flasinski S., Bujarski J.J. Foreign complementary sequences facilitate genetic RNA recombination in Brome mosaic virus. Virology. 208:1995;370-375.
23. Dzianott A., Rauffer-Bruyere N., Bujarski J.J. Studies on functional interaction between Brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro. Virology. 289:2001;137-149.
24. Figlerowicz M., Bujarski J.J. RNA recombination in Brome mosaic virus, a model plus strand RNA virus. Acta Biochim. Pol. 45:1998;468-847.
25. Figlerowicz M., Nagy P.D., Tang N., Kao C.C., Bujarski J.J. Mutations in the N terminus of the Brome mosaic virus polymerase affect genetic RNA-RNA recombination. J. Virol. 72:1998;9192-9200.
26. French R., Ahlquist P. Characterization and engineering of sequences controlling in vivo synthesis of Brome mosaic virus subgenomic RNA. J. Virol. 62:1988;2411-2420.
27. Fujisaki K., Hagihara F., Kaido M., Mise K., Okuno T. Complete nucleotide sequence of Spring beauty latent virus, a bromovirus infectious to Arabidopsis thaliana. Arch. Virol. 148:2003;165-175.
28. Graves M., Pogany J., Romero J. Defective interfering RNAs and defective viruses associated with multipartite RNA viruses of plants. Semin. Virol. 7:1996;399-408.
29. Hillman B.I., Carrington J.C., Morris T.J. A defective interfering RNA that contains a mosaic of a plant virus genome. Cell. 51:1987;427-433.
30. Inoue-Nagata A.K., Kormelink R., Nagata T., Kitajima E.W., Goldbach R., Peters D. Effects of temperature and host on the generation of Tomato spotted wilt virus defective interfering RNAs. Phytopathology. 87:1997;1168-1173.
31. Janda M., Ahlquist P. RNA-dependent replication, transcription, and persistence of Brome mosaic virus RNA replicons in S. cerevisiae. Cell. 72:1993;961-970.
32. Janda M., French R., Ahlquist P. High efficiency T7 polymerase synthesis of infectious RNA from cloned Brome mosaic virus cDNA and effects of 5′ extensions of transcript infectivity. Virology. 158:1987;259-262.
33. Kachroo P., Yoshioka K., Shah J., Dooner H.K., Klessig D.F. Resistance to Turnip crinkle virus in Arabidopsis is regulated by two host genes and is salicylic acid dependent but NPR1, ethylene, and jasmonate independent. Plant Cell. 12:2000;677-690.
34. Kaniewski W., Thomas P. A two-step ELISA for rapid, reliable detection of potato viruses. Am. Potato J. 65:1988;561-571.
35. Kong Q., Oh J.W., Simon A.E. Symptom attenuation by a normally virulent satellite RNA of Turnip crinkle virus is associated with the coat protein open reading frame. Plant Cell. 7:1995;1625-1634.
36. Kong Q., Wang J., Simon A.E. Satellite RNA-mediated resistance to Turnip crinkle virus in Arabidopsis involves a reduction in virus movement. Plant Cell. 9:1997;2051-2063.
37. Kroner P.A., Young B.M., Ahlquist P. Analysis of the role of Brome mosaic virus 1a protein domains in RNA replication, using linker insertion mutagenesis. J. Virol. 64:1990;6110-6120.
38. Lane L.C. The bromoviruses. Adv. Virus Res. 19:1974;151-220.
39. Lee W.M., Ishikawa M., Ahlquist P. Mutation of host delta9 fatty acid desaturase inhibits Brome mosaic virus RNA replication between template recognition and RNA synthesis. J. Virol. 75:2001;2097-2106.
40. Mallory A.C., Parks G., Endres M.W., Baulcombe D., Bowman L.H., Pruss G.J., Vance V.B. The amplicon-plus system for high-level expression of transgenes in plants. Nat. Biotechnol. 6:2002;622-625.
41. Marathe R., Anandalakshmi R., Smith T.H., Pruss G.J., Vance V.B. RNA viruses as inducers, suppressors and targets of post-transcriptional gene silencing. Plant Mol. Biol. 43:2000;295-306.
42. Martin A., Cabrera Y., Poch H.L., Martinez-Herrera D., Ponz F. Resistances to turnip mosaic potyvirus in Arabidopsis thaliana. Mol. Plant-Microbe Interact. 12:1999;1016-1021.
43. Matzke M.A., Matzke A.J., Pruss G.J., Vance V.B. RNA-based silencing strategies in plants. Curr. Opin. Genet. Dev. 11:2001;221-227.
44. Mourrain P., Beclin C., Elmayan T., Feuerbach F., Godon C., Morel J.B., Jouette D., Lacombe A.M., Nikic S., Picault N., Remoue K., Sanial M., Vo T.A., Vaucheret H. Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell. 101:2000;533-542.
45. Nagy P.D., Bujarski J.J. Targeting the site of RNA-RNA recombination in Brome mosaic virus with antisense sequences. Proc. Natl. Acad. Sci. U. S. A. 90:1993;6390-6394.
46. Nagy P.D., Bujarski J.J. Efficient system of homologous RNA recombination in Brome mosaic virus: sequence and structure requirements and accuracy of crossovers. J. Virol. 69:1995;131-140.
47. Nagy P.D., Bujarski J.J. Silencing homologous RNA recombination hot spots with GC-rich sequences in Brome mosaic virus. J. Virol. 72:1998;1122-1130.
48. Nagy P.D., Simon A.E. New insights into the mechanisms of RNA recombination. Virology. 235:1997;1-9.
49. Nagy P.D., Dzianott A., Ahlquist P., Bujarski J.J. Mutations in the helicase-like domain of protein 1a alter the sites of RNA-RNA recombination in Brome mosaic virus. J. Virol. 69:1995;2547-2556.
50. Noueiry A.O., Ahlquist P. Brome mosaic virus RNA replication: revealing the role of the host In RNA virus replication. Annu. Rev. Phytopathol. 2003.
51. Noueiry A.O., Chen J., Ahlquist P. A mutant allele of essential, general translation initiation factor DED1 selectively inhibits translation of a viral mRNA. Proc. Natl. Acad. Sci. U. S. A. 97:2000;12985-12990.
52. Oh J.W., Kong Q., Song C., Carpenter C.D., Simon A.E. Open reading frames of Turnip crinkle virus involved in satellite symptom expression and incompatibility with Arabidopsis thaliana ecotype Dijon. Mol. Plant-Microbe Interact. 8:1995;979-987.
53. Ohshima K., Yamaguchi Y., Hirota R., Hamamoto T., Tomimura K., Tan Z., Sano T., Azuhata F., Walsh J.A., Fletcher J., Chen J., Gera A., Gibbs A. Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J. Gen. Virol. 83:2002;1511-1521.
54. Qu F., Ren T., Morris T.J. The coat protein of Turnip crinkle virus suppresses posttranscriptional gene silencing at an early initiation step. J. Virol. 77:2003;511-522.
55. Quadt R., Kao C.C., Browning K.S., Hershberger R.P., Ahlquist P. Characterization of a host protein associated with Brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 90:1993;1498-1502.
56. Rao A.L., Sullivan B.P., Hall T.C. Use of Chenopodium hybridum facilitates isolation of Brome mosaic virus RNA recombinants. J. Gen. Virol. 71:1990;1403-1407.
57. Ren T., Qu F., Morris T.J. HRT gene function requires interaction between a NAC protein and viral capsid protein to confer resistance to Turnip crinkle virus. Plant Cell. 12:2000;1917-1926.
58. Roberts I.M. Immunoelectron microscopy of extracts of virus-infected plants. Harris J.R., Horne R.W. Electron Microscopy of Proteins. vol. 5:1986;293-358 Academic Press, London.
59. Romero J., Huang Q., Pogany J., Bujarski J.J. Characterization of defective interfering RNA components that increase symptom severity of Broad bean mottle virus. Virology. 194:1993;576-584.
60. Schmitz I., Rao A.L. Molecular studies on bromovirus capsid protein. I. Characterization of cell-to-cell movement-defective RNA3 variants of Brome mosaic virus. Virology. 226:1996;281-293.
61. Stenger D.C., Stevenson M.C., Hormuzdi S.G., Bisaro D.M. A number of subgenomic DNAs are produced following agroinoculation of plants with Beet curly top virus. J. Gen. Virol. 73:1992;237-242.
62. Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.J., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., Wickner R.B. Virus taxonomy. Seventh report of the International Committee on Taxonomy of Viruses. 2000;Academic Press.
63. Whitham S.A., Anderberg R.J., Chisholm S.T., Carrington J.C. Arabidopsis RTM2 gene is necessary for specific restriction of Tobacco etch virus and encodes an unusual small heat shock-like protein. Plant Cell. 12:2000;569-582.
64. Wierzchoslawski R., Dzianott A., Kunimalayan S., Bujarski J.J. Transcriptionally active subgenomic promoter supports homologous crossovers in a plus-strand RNA virus. J. Virol. 77:2003;6769-6776.
65. Yamanaka T., Ohta T., Takahashi M., Meshi T., Schmidt R., Dean C., Naito S., Ishikawa M. TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein. Proc. Natl. Acad. Sci. U. S. A. 97:2000;10107-10112.
66. Yoshii M., Yoshioka N., Ishikawa M., Naito S. Isolation of an Arabidopsis thaliana mutant in which the multiplication of both Cucumber mosaic virus and Turnip crinkle virus is affected. J. Virol. 72:1998;8731-8737.
67. Zhao Y., DelGrosso L., Yigit E., Dempsey D.A., Klessig D.F., Wobbe K.K. The amino terminus of the coat protein of Turnip crinkle virus is the AVR factor recognized by resistant Arabidopsis. Mol. Plant-Microbe Interact. 13:2000;1015-1018.