-
1
-
-
0032488225
-
Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases
-
Adkins, S., and C. C. Kao. 1998. Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases. Virology 252:1-8.
-
(1998)
Virology
, vol.252
, pp. 1-8
-
-
Adkins, S.1
Kao, C.C.2
-
2
-
-
0031948720
-
Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase
-
Adkins, S., S. S. Stawicki, G. Faurote, R. W. Siegel, and C. C. Kao. 1998. Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase. RNA 4:455-470.
-
(1998)
RNA
, vol.4
, pp. 455-470
-
-
Adkins, S.1
Stawicki, S.S.2
Faurote, G.3
Siegel, R.W.4
Kao, C.C.5
-
3
-
-
0026815645
-
Bromovirus RNA replication and transcription
-
Ahlquist, P. 1992. Bromovirus RNA replication and transcription. Curr. Opin. Genet. Dev. 2:71-76.
-
(1992)
Curr. Opin. Genet. Dev.
, vol.2
, pp. 71-76
-
-
Ahlquist, P.1
-
4
-
-
0035965239
-
The kissing hairpin sequence promotes recombination within the HIV-I 5′ leader region
-
Balakrishnan, M., P. J. Fay, and R. A. Bambara. 2001. The kissing hairpin sequence promotes recombination within the HIV-I 5′ leader region. J. Biol. Chem. 276:36482-36492.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 36482-36492
-
-
Balakrishnan, M.1
Fay, P.J.2
Bambara, R.A.3
-
5
-
-
0031442277
-
Subgenomic RNAs: The possible building blocks for modular recombination of Closteroviridae genomes
-
Bar-Joseph, M., G. Yang, R. Gafny, and M. Mawass. 1997. Subgenomic RNAs: the possible building blocks for modular recombination of Closteroviridae genomes. Semin. Virol. 8:113-119.
-
(1997)
Semin. Virol.
, vol.8
, pp. 113-119
-
-
Bar-Joseph, M.1
Yang, G.2
Gafny, R.3
Mawass, M.4
-
6
-
-
0034948006
-
Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3′-AUAC-5′ tetranucleotide: Implications for the mechanism of transcription termination
-
Barr, J. N., and G. W. Wertz. 2001. Polymerase slippage at vesicular stomatitis virus gene junctions to generate poly(A) is regulated by the upstream 3′-AUAC-5′ tetranucleotide: implications for the mechanism of transcription termination. J. Virol. 75:6901-6913.
-
(2001)
J. Virol.
, vol.75
, pp. 6901-6913
-
-
Barr, J.N.1
Wertz, G.W.2
-
7
-
-
0033999634
-
Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus
-
Bruyere, A., M. Wantroba, S. Flasinski, A. Dzianott, and J. J. Bujarski. 2000. Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus. J. Virol. 74:4214-4219.
-
(2000)
J. Virol.
, vol.74
, pp. 4214-4219
-
-
Bruyere, A.1
Wantroba, M.2
Flasinski, S.3
Dzianott, A.4
Bujarski, J.J.5
-
8
-
-
0030432592
-
Introduction: Experimental systems of genetic recombination and defective RNA formation in RNA viruses
-
Bujarski, J. J. 1996. Introduction: experimental systems of genetic recombination and defective RNA formation in RNA viruses. Semin. Virol. 7:361-362.
-
(1996)
Semin. Virol.
, vol.7
, pp. 361-362
-
-
Bujarski, J.J.1
-
9
-
-
0027298575
-
Sequences and structures required for recombination between virus-associated RNAs
-
Cascone, P. J., T. F. Haydar, and A. E. Simon. 1993. Sequences and structures required for recombination between virus-associated RNAs. Science 260:801-805.
-
(1993)
Science
, vol.260
, pp. 801-805
-
-
Cascone, P.J.1
Haydar, T.F.2
Simon, A.E.3
-
10
-
-
0037154257
-
tRNA elements mediate the assembly of an icosahedral RNA virus
-
Choi, Y. G., T. W. Dreher, and A. L. Rao. 2002. tRNA elements mediate the assembly of an icosahedral RNA virus. Proc. Natl. Acad. Sci. USA 99:655-660.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 655-660
-
-
Choi, Y.G.1
Dreher, T.W.2
Rao, A.L.3
-
11
-
-
0028950942
-
Foreign complementary sequences facilitate genetic recombination in brome mosaic virus
-
Dzianott, A., S. Flasinski, S. Pratt, and J. J. Bujarski. 1995. Foreign complementary sequences facilitate genetic recombination in brome mosaic virus. Virology 208:370-375.
-
(1995)
Virology
, vol.208
, pp. 370-375
-
-
Dzianott, A.1
Flasinski, S.2
Pratt, S.3
Bujarski, J.J.4
-
12
-
-
0035840796
-
Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro
-
Dzianott, A., N. Rauffer-Bruyere, and J. J. Bujarski. 2001. Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro. Virology 289:137-149.
-
(2001)
Virology
, vol.289
, pp. 137-149
-
-
Dzianott, A.1
Rauffer-Bruyere, N.2
Bujarski, J.J.3
-
13
-
-
0032249157
-
RNA recombination in brome mosaic virus, a model plus strand RNA virus
-
Figlerowicz, M., and J. J. Bujarski. 1998. RNA recombination in brome mosaic virus, a model plus strand RNA virus. Acta Biochim. Pol. 45:847-868.
-
(1998)
Acta Biochim. Pol.
, vol.45
, pp. 847-868
-
-
Figlerowicz, M.1
Bujarski, J.J.2
-
14
-
-
0031048602
-
A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus
-
Figlerowicz, M., P. D. Nagy, and J. J. Bujarski. 1997. A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus. Proc. Natl. Acad. Sci. USA 94:2073-2078.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2073-2078
-
-
Figlerowicz, M.1
Nagy, P.D.2
Bujarski, J.J.3
-
15
-
-
0024044629
-
Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA
-
French, R., and P. Ahlquist. 1988. Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA. J. Virol. 62:2411-2420.
-
(1988)
J. Virol.
, vol.62
, pp. 2411-2420
-
-
French, R.1
Ahlquist, P.2
-
16
-
-
0032827258
-
Nonreplicative RNA recombination in poliovirus
-
Gmyl, A. P., E. V. Belousov, S. V. Maslova, E. V. Khitrina, A. B. Chetverin, and V. I. Agol. 1999. Nonreplicative RNA recombination in poliovirus. J. Virol. 73:8958-8965.
-
(1999)
J. Virol.
, vol.73
, pp. 8958-8965
-
-
Gmyl, A.P.1
Belousov, E.V.2
Maslova, S.V.3
Khitrina, E.V.4
Chetverin, A.B.5
Agol, V.I.6
-
17
-
-
0028278710
-
Recombination between viral RNA and transgenic plant transcripts
-
Greene, A. E., and R. F. Allison. 1994. Recombination between viral RNA and transgenic plant transcripts. Science 263:1423-1425.
-
(1994)
Science
, vol.263
, pp. 1423-1425
-
-
Greene, A.E.1
Allison, R.F.2
-
18
-
-
0034033255
-
A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro
-
Haasnoot, P. C., F. T. Brederodem, R. C. Olsthoorn, and J. F. Bol. 2000. A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro. RNA 6:708-716.
-
(2000)
RNA
, vol.6
, pp. 708-716
-
-
Haasnoot, P.C.1
Brederodem, F.T.2
Olsthoorn, R.C.3
Bol, J.F.4
-
19
-
-
0023273613
-
High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5′ extensions of transcript infectivity
-
Janda, M., R. French, and P. Ahlquist. 1987. High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cDNA and effects of 5′ extensions of transcript infectivity. Virology 158:259-262.
-
(1987)
Virology
, vol.158
, pp. 259-262
-
-
Janda, M.1
French, R.2
Ahlquist, P.3
-
20
-
-
0035942216
-
Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: Implications for RNA-RNA recombination
-
Kim, M. J., and C. C. Kao. 2001. Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: implications for RNA-RNA recombination. Proc. Natl. Acad. Sci. USA 98:4972-4977.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4972-4977
-
-
Kim, M.J.1
Kao, C.C.2
-
21
-
-
0024284004
-
Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter
-
Marsh, L. E., T. W. Dreher, and T. C. Hall. 1988. Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter. Nucleic Acids Res. 16:981-995.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 981-995
-
-
Marsh, L.E.1
Dreher, T.W.2
Hall, T.C.3
-
22
-
-
0021933941
-
Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA
-
Miller, W. A., T. W. Dreher, and T. C. Hall. 1985. Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA. Nature 313:68-70.
-
(1985)
Nature
, vol.313
, pp. 68-70
-
-
Miller, W.A.1
Dreher, T.W.2
Hall, T.C.3
-
24
-
-
0034691523
-
Synthesis of subgenomic RNAs by positive-strand RNA viruses
-
Miller, W. A., and G. Koev. 2000. Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology 273:1-8.
-
(2000)
Virology
, vol.273
, pp. 1-8
-
-
Miller, W.A.1
Koev, G.2
-
25
-
-
0026660332
-
Genetic recombination in brome mosaic virus: Effect of sequence and replication of RNA on accumulation of recombinants
-
Nagy, P. D., and J. J. Bujarski. 1992. Genetic recombination in brome mosaic virus: effect of sequence and replication of RNA on accumulation of recombinants. J. Virol. 66:6824-6828.
-
(1992)
J. Virol.
, vol.66
, pp. 6824-6828
-
-
Nagy, P.D.1
Bujarski, J.J.2
-
26
-
-
0027313424
-
Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences
-
Nagy, P. D., and J. J. Bujarski. 1993. Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc. Natl. Acad. Sci. USA 90:6390-6394.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6390-6394
-
-
Nagy, P.D.1
Bujarski, J.J.2
-
27
-
-
0028936186
-
Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers
-
Nagy, P. D., and J. J. Bujarski. 1995. Efficient system of homologous RNA recombination in brome mosaic virus: sequence and structure requirements and accuracy of crossovers. J. Virol. 69:131-140.
-
(1995)
J. Virol.
, vol.69
, pp. 131-140
-
-
Nagy, P.D.1
Bujarski, J.J.2
-
28
-
-
0030900659
-
Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus
-
Nagy, P. D., and J. J. Bujarski. 1997. Engineering of homologous recombination hotspots with AU-rich sequences in brome mosaic virus. J. Virol. 71:3799-3810.
-
(1997)
J. Virol.
, vol.71
, pp. 3799-3810
-
-
Nagy, P.D.1
Bujarski, J.J.2
-
29
-
-
0033079816
-
Mapping sequences active in homologous RNA recombination in brome mosaic virus: Prediction of recombination hot spots
-
Nagy, P. D., C. Ogiela, and J. J. Bujarski. 1999. Mapping sequences active in homologous RNA recombination in brome mosaic virus: prediction of recombination hot spots. Virology 254:92-104.
-
(1999)
Virology
, vol.254
, pp. 92-104
-
-
Nagy, P.D.1
Ogiela, C.2
Bujarski, J.J.3
-
30
-
-
0033570067
-
RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus
-
Nagy, P. D., J. Pogany, and A. E. Simon. 1999. RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus. EMBO J. 18:5653-5665.
-
(1999)
EMBO J.
, vol.18
, pp. 5653-5665
-
-
Nagy, P.D.1
Pogany, J.2
Simon, A.E.3
-
31
-
-
0037301366
-
Enhancer-like activity of a brome mosaic virus RNA promoter
-
Ranjith-Kumar, C. T., X. Zhang, and C. C. 2003. Enhancer-like activity of a brome mosaic virus RNA promoter. J. Virol. 77:1830-1839.
-
(2003)
J. Virol.
, vol.77
, pp. 1830-1839
-
-
Ranjith-Kumar, C.T.1
Zhang, X.2
-
32
-
-
0030761264
-
Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase
-
Siegel, R. W., S. Adkins, and C. C. Kao. 1997. Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase. Proc. Natl. Acad. Sci. USA 94:11238-11243.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11238-11243
-
-
Siegel, R.W.1
Adkins, S.2
Kao, C.C.3
-
33
-
-
0032518374
-
A mechanism for all polymerases
-
Steitz, T. 1998. A mechanism for all polymerases. Nature 391:231-232.
-
(1998)
Nature
, vol.391
, pp. 231-232
-
-
Steitz, T.1
-
34
-
-
0032975560
-
A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo
-
Sullivan, M. L., and P. Ahlquist. 1999. A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo. J. Virol. 73:2622-2632.
-
(1999)
J. Virol.
, vol.73
, pp. 2622-2632
-
-
Sullivan, M.L.1
Ahlquist, P.2
-
35
-
-
0032584643
-
An integrated model of the transcription complex in elongation, termination, and editing
-
von Hippel, P. H. 1998. An integrated model of the transcription complex in elongation, termination, and editing. Science 281:660-665.
-
(1998)
Science
, vol.281
, pp. 660-665
-
-
Von Hippel, P.H.1
-
36
-
-
0036827628
-
Human immunodeficiency virus type 1 recombination: Rate, fidelity, and putative hot spots
-
Zhuang, J., A. E. Jetzt, G. Sun, H. Yu, G. Klarmann, Y. Ron, B. D. Preston, and J. P. Dougherty. 2002. Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots. J. Virol. 76:11273-11282.
-
(2002)
J. Virol.
, vol.76
, pp. 11273-11282
-
-
Zhuang, J.1
Jetzt, A.E.2
Sun, G.3
Yu, H.4
Klarmann, G.5
Ron, Y.6
Preston, B.D.7
Dougherty, J.P.8
|