Multiple stress signal integration in the regulation of the complex σS-dependent csiD-ygaF-gabDTP operon in Escherichia coli

Molecular Microbiology

Volumn 51, Issue 3, 2004, Pages 799-811

  Metzner, Martin ^a   Germer, Jens ^a,b   Hengge, Regine ^a  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

^b Endotell AG   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

4 AMINOBUTYRATE AMINOTRANSFERASE; CYCLIC AMP;

ARTICLE; BIOACCUMULATION; CATABOLISM; CONTROLLED STUDY; ESCHERICHIA COLI; NONHUMAN; OPERON; OSMOLARITY; PH; PHYSIOLOGY; PRIORITY JOURNAL; PROMOTER REGION; REGULATORY MECHANISM; STARVATION;

BACTERIAL PROTEINS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GAMMA-AMINOBUTYRIC ACID; GENE EXPRESSION REGULATION, BACTERIAL; GENES, REPORTER; GLUTAMIC ACID; OPERON; PROMOTER REGIONS (GENETICS); REPRESSOR PROTEINS; SIGMA FACTOR; SIGNAL TRANSDUCTION;

ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 1242275398     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2003.03867.x     Document Type: Article

References (52)

1. Baca-DeLancey, R.R., South, M.M.T., Ding, X., and Rather, P.N. (1999) Escherichia coli genes regulated by cell-to-cell signalling. Proc Natl Acad Sci USA 96: 4610-4614.
2. Bartsch, K., von Johnn-Marteville, A., and Schulz, A. (1990) Molecular analysis of two genes of the Escherichia coli gab cluster: nucleotide sequence of the glutamate: succinic semialdehyde transaminase gene (gabT) and characterization of the succinic semialdehyde dehydrogenase gene (gabD). J Bacteriol 172: 7035-7042.
3. S. Mol Microbiol 39: 1153-1165.
4. de Biase, D., Tramonti, A., Bossa, F., and Visca, P. (1999) The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol Microbiol 32: 1198-1211.
5. Capitani, G., de Biase, D., Aurizi, C., Gut, H., Bossa, F., and Grutter, M.G. (2003) Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase. EMBO J 22: 4027-4037.
6. Casadaban, M.J. (1976) Transposition and fusion of the Iac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol 104: 541-555.
7. Castanie-Cornet, M.P., and Foster, J.W. (2001) Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylate genes. Microbiology 147: 709-715.
8. Castanie-Cornet, M.-P., Penfound, T.A., Smith, D., Elliott, J.F., and Foster, J.W. (1999) Control of acid resistance in Escherichia coli. J Bacteriol 181: 3525-2535.
9. Csonka, L.N., Ikeda, T.P., Fletcher, S.A., and Kustu, S. (1994) The accumulation of glutamate is necessary for optimal growth of Salmonella typhimurium media of high osmolality but not induction of the proU operon. J Bacteriol 176: 6324-6333.
10. Datsenko, K.A., and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Nat Acad Sci USA 97: 6640-6645.
11. S holoenzymes. Mol Microbiol 16: 649-656.
12. Dover, S., and Halpern, Y.S. (1972) Utilization of γ-aminobutyric acid as the sole carbon and nitrogen source by Escherichia coli K-12 mutants. J Bacteriol 109: 835-843.
13. Dover, S., and Halpern, Y.S. (1974) Genetic analysis of the γ-aminobutyrate utilization pathway in Escherichia coli K-12. J Bacteriol 117: 494-501.
14. S-dependent promoters. Mol Microbiol 21: 657-659.
15. S RNA polymerase. Mol Microbiol 42: 939-954.
16. S is positively regulated by ppGpp. J Bacteriol 175: 7982-7989.
17. S-dependent promoter in Escherichia coli. Mol Microbiol 41: 705-716.
18. Groat, R.G., Schultz, J.E., Zychlinski, E., Bockman, A.T., and Matin, A. (1986) Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival. J Bacteriol 168: 486-493.
19. Helling, R.B. (1994) Why does Escherichia coli have two primary pathways for synthesis of glutamate? J Bacteriol 176: 4664-4668.
20. S subunit of RNA polymerase in Escherichia coli. Microbiol Mol Biol Rev 66: 373-395.
21. S-dependent? Curr Op Microbiol 5: 591-595.
22. Kashiwagi, K., Miyamoto, S., Suzuki, F., Kobayashi, H., and Igarashi, K. (1992) Excretion of putrescine by the putrescine-ornithine antiporter encoded by the potE gene of Escherichia coli. Proc Natl Acad Sci USA 89: 4529-4533.
23. Lange, R., and Hengge-Aronis, R. (1991) Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5: 49-59.
24. Lee, S.J., and Gralla, J.D. (2001) Sigma38 (rpoS) RNA polymerase promoter engagement via -10 region nucleotides. J Biol Chem 276: 30064-30071.
25. S (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium. Mol Microbiol 17: 155-167.
26. Lucht, J.M., Dersch, P., Kempf, B., and Bremer, E. (1994) Interactions of the nucleoid-associated DNA-binding protein H-NS with the regulatory region of the osmotically controlled proU operon on Escherichia coli. J Biol Chem 269: 6578-6586.
27. Ma, Z., Richard, H., Tucker, D.L., Conway, T., and Foster, J.W. (2002) Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW). J Bacteriol 184: 7001-7012.
28. S and requires activation by cAMP-CRP. J Mol Biol 276: 339-353.
29. Maurizi, M.R., and Rasulova, F. (2002) Degradation of L-glutamate dehydrogenase from Escherichia coli: allosteric regulation of enzyme stability. Arch Biochem Biophys 397: 206-216.
30. + and glutamate acumulation during osmotic adaptation of Escherichia coli. J Biol Chem 269: 1911-1917.
31. Metzer, E., Levitz, R., and Halpern, Y.S. (1979) Isolation and properties of Escherichia coli K-12 mutants impaired in the utilization of y-aminobutyrate. J Bacteriol 137: 1111-1118.
32. Miller, J.H. (1972) Experiments In Molecular Genetics. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory.
33. Minton, N.P. (1984) Improved plasmid vectors for the isolation of translational Iac gene fusions. Gene 31: 269-273.
34. S subunit of RNA polymerase in Escherichia coli. J Bacteriol 178: 1607-1613.
35. Niegemann, E., Schulz, A., and Bartsch, K. (1993) Molecular organization of the Escherichia coli gab cluster: nucleotide sequence of the structural genes gabD and gabP and expression of the GABA permease gene. Arch Microbiol 160: 454-460.
36. 38 of Escherichia coli is important for transcription under high-salt conditions and sigma activities in vivo. J Bacteriol 182: 4628-4631.
37. Peekhaus, N., and Conway, T. (1998) Positive and negative transcriptional regulation of the Escherichia coli gluconate regulon gene gntT by GntR and the cyclic AMP (cAMP)-cAMP receptor protein complex. J Bacteriol 180: 1777-1785.
38. Powell, B.S., Court, D.L., Nakamura, Y., Rivas, M.P., and Turnbough, C.L. Jr (1994) Rapid confirmation of single copy lambda prophage integration by PCR. Nucleic Acids Res 22: 5765-5766.
39. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
40. Schellhorn, H.E., Audia, J.P., Wei, L.I.C., and Chang, L. (1998) Identification of conserved, RpoS-dependent stationary phase genes of Escherichia coli. J Bacteriol 180: 6283-6291.
41. Schiller, D., Kruse, D., Kneifel, H., Krämer, R., and Burkovski, A. (2000) Polyamine transport and role of potE response to osmotic stress in Escherichia coli. J Bacteriol 182: 6247-6249.
42. Schneider, B.L., Ruback, S., Kiupakis, A.K., Kasbarian, H., Pybus, C., and Reitzer, L. (2002) The Escherichia coli gabDTPC operon: specific γ-aminobutyrate catabolism and nonspecific induction. J Bacteriol 184: 6976-6986.
43. Silhavy, T.J., Berman, M.L., and Enquist, L.W. (1984) Experiments with Gene Fusions. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory.
44. Simons, R.W., Houman, F., and Kleckner, N. (1987) Improved single and multicopy Iac-based cloning vectors for protein and operon fusions. Gene 53: 85-96.
45. Stancik, L.M., Stancik, D.M., Schmidt, B., Barnhard, D.M., Yoncheva, Y.N., and Slonczewski, J.L. (2002) pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli. J Bacteriol 184: 4246-4258.
46. Tabor, C.W., and Tabor, H. (1985) Polyamines in microorganisms. Microbiol Rev 49: 81-99.
47. Tweedale, H., Notley-McRobb, L., and Ferenci, T. (1998) Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ('metabolome') analysis. J Bacteriol 180: 5109-5116.
48. Weber, A., and Jung, K. (2002) Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays. J Bacteriol 184: 5502-5507.
49. Weichart, D., Lange, R., Henneberg, N., and Hengge-Aronis, R. (1993) Identification and characterization of stationary phase-inducible genes in Escherichia coli. Mol Microbiol 10: 407-420.
50. Weichart, D., Querfurth, N., Dreger, M., and Hengge-Aronis, R. (2003) Global role for ClpP-containing proteases in stationary phase adaptation of Escherichia coli. J Bacteriol 185: 115-125.
51. Yan, D., Ikeda, T.P., Shauger, A.E., and Kustu, S. (1996) Glutamate is required to maintain the steady-state potassium pool in Salmonella typhimurium. Proc Natl Acad Sci USA 93: 6527-6531.
52. Zimmer, D.P., Soupene, E., Lee, H.L., Wendisch, V.F., Khodursky, A.B., Peter, B.J., et al. (2000) Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Proc Natl Acad Sci USA 97: 14674-14679.