-
1
-
-
0042698808
-
Interspecific evolution: Microbial symbiosis, endosymbiosis and gene transfer
-
M. Hoffmeister W. Martin Interspecific evolution: Microbial symbiosis, endosymbiosis and gene transfer Environ. Microbiol. 5 2003 641 649
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 641-649
-
-
Hoffmeister, M.1
Martin, W.2
-
2
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
W. Martin T. Rujan E. Richly A. Hansen S. Cornelsen T. Lins D. Leister B. Stoebe M. Hasegawa D. Penny Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus Proc. Natl. Acad. Sci. USA 99 2002 12246 12251
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelsen, S.5
Lins, T.6
Leister, D.7
Stoebe, B.8
Hasegawa, M.9
Penny, D.10
-
3
-
-
0033965922
-
The PPR motif: A TPR-related motif prevalent in plant organellar proteins
-
I.D. Small N. Peeters The PPR motif: A TPR-related motif prevalent in plant organellar proteins Trends Biochem. Sci. 25 2000 46 47
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 46-47
-
-
Small, I.D.1
Peeters, N.2
-
4
-
-
0030959648
-
DNA sequence evidence for the segmental allotetraploid origin of maize
-
B.S. Gaut J.F. Doebley DNA sequence evidence for the segmental allotetraploid origin of maize Proc. Natl. Acad. Sci. USA 94 1997 6809 6814
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6809-6814
-
-
Gaut, B.S.1
Doebley, J.F.2
-
5
-
-
0034671866
-
The origins of genomic duplications in Arabidopsis
-
T.J. Vision D.G. Brown S.D. Tanksley The origins of genomic duplications in Arabidopsis Science 290 2000 2114 2117
-
(2000)
Science
, vol.290
, pp. 2114-2117
-
-
Vision, T.J.1
Brown, D.G.2
Tanksley, S.D.3
-
6
-
-
0000997789
-
Novel mechanisms for maturation of chloroplast transfer RNA precursors
-
M.J. Wang N.W. Davis P. Gegenheimer Novel mechanisms for maturation of chloroplast transfer RNA precursors EMBO J. 7 1988 1567 1574
-
(1988)
EMBO J.
, vol.7
, pp. 1567-1574
-
-
Wang, M.J.1
Davis, N.W.2
Gegenheimer, P.3
-
7
-
-
0035984030
-
The treasure trove of algal chloroplast genomes: Surprises in architecture and gene content, and their functional implications
-
C.L. Simpson D.B. Stern The treasure trove of algal chloroplast genomes: Surprises in architecture and gene content, and their functional implications Plant Physiol. 129 2002 957 966
-
(2002)
Plant Physiol.
, vol.129
, pp. 957-966
-
-
Simpson, C.L.1
Stern, D.B.2
-
8
-
-
0023647945
-
Control of plastid gene expression during development: The limited role of transcriptional regulation
-
X.W. Deng W. Gruissem Control of plastid gene expression during development: The limited role of transcriptional regulation Cell 49 1987 379 387
-
(1987)
Cell
, vol.49
, pp. 379-387
-
-
Deng, X.W.1
Gruissem, W.2
-
9
-
-
85001085933
-
Transcription and RNA stability are important determinants of higher plant chloroplast RNA levels
-
J.E. Mullet R.R. Klein Transcription and RNA stability are important determinants of higher plant chloroplast RNA levels EMBO J. 6 1987 1571 1579
-
(1987)
EMBO J.
, vol.6
, pp. 1571-1579
-
-
Mullet, J.E.1
Klein, R.R.2
-
10
-
-
0024745101
-
Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts
-
P.E. Gamble J.E. Mullet Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts EMBO J. 8 1989 2785 2794
-
(1989)
EMBO J.
, vol.8
, pp. 2785-2794
-
-
Gamble, P.E.1
Mullet, J.E.2
-
11
-
-
0025182348
-
Light-induced transcription of chloroplast genes: psbA transcription is differentially enhanced in illuminated barley
-
R.R. Klein J.E. Mullet Light-induced transcription of chloroplast genes: psbA transcription is differentially enhanced in illuminated barley J. Biol. Chem. 265 1990 1895 1902
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 1895-1902
-
-
Klein, R.R.1
Mullet, J.E.2
-
12
-
-
0033582494
-
Detailed architecture of the barley chloroplast psbD-psbC blue light-responsive promoter
-
M. Kim K.E. Thum D.T. Morishige J.E. Mullet Detailed architecture of the barley chloroplast psbD-psbC blue light-responsive promoter J. Biol. Chem. 274 1999 4684 4692
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 4684-4692
-
-
Kim, M.1
Thum, K.E.2
Morishige, D.T.3
Mullet, J.E.4
-
13
-
-
0030053397
-
Transcription of tufA and other chloroplast-encoded genes is controlled by a circadian clock in Chlamydomonas
-
S. Hwang R. Kawazoe D.L. Herrin Transcription of tufA and other chloroplast-encoded genes is controlled by a circadian clock in Chlamydomonas Proc. Natl. Acad. Sci. USA 93 1996 996 1000
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 996-1000
-
-
Hwang, S.1
Kawazoe, R.2
Herrin, D.L.3
-
14
-
-
0027548365
-
Light-regulated and endogenous fluctuations of chloroplast transcript levels in Chlamydomonas: Regulation by transcription and RNA degradation
-
M.L. Salvador U. Klein L. Bogorad Light-regulated and endogenous fluctuations of chloroplast transcript levels in Chlamydomonas : Regulation by transcription and RNA degradation Plant J. 3 1993 213 219
-
(1993)
Plant J.
, vol.3
, pp. 213-219
-
-
Salvador, M.L.1
Klein, U.2
Bogorad, L.3
-
15
-
-
0035205438
-
Plastid transcription: A ménage à trois?
-
A.B. Cahoon D.B. Stern Plastid transcription: A ménage à trois? Trends Plant Sci. 6 2001 45 46
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 45-46
-
-
Cahoon, A.B.1
Stern, D.B.2
-
16
-
-
0034202992
-
The role of sigma factors in plastid transcription
-
L.A. Allison The role of sigma factors in plastid transcription Biochimie 82 2000 537 548
-
(2000)
Biochimie
, vol.82
, pp. 537-548
-
-
Allison, L.A.1
-
18
-
-
0033860532
-
Participation of nuclear genes in chloroplast gene expression
-
A. Barkan M. Goldschmidt-Clermont Participation of nuclear genes in chloroplast gene expression Biochimie 82 2000 559 572
-
(2000)
Biochimie
, vol.82
, pp. 559-572
-
-
Barkan, A.1
Goldschmidt-Clermont, M.2
-
19
-
-
0033861250
-
Processing and degradation of chloroplast mRNA
-
R.A. Monde G. Schuster D.B. Stern Processing and degradation of chloroplast mRNA Biochimie 82 2000 573 582
-
(2000)
Biochimie
, vol.82
, pp. 573-582
-
-
Monde, R.A.1
Schuster, G.2
Stern, D.B.3
-
20
-
-
0034811993
-
The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts
-
S. Felder K. Meierhoff A.P. Sane J. Meurer C. Driemel H. Plucken P. Klaff B. Stein N. Bechtold P. Westhoff The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts Plant Cell 13 2001 2127 2141
-
(2001)
Plant Cell
, vol.13
, pp. 2127-2141
-
-
Felder, S.1
Meierhoff, K.2
Sane, A.P.3
Meurer, J.4
Driemel, C.5
Plucken, H.6
Klaff, P.7
Stein, B.8
Bechtold, N.9
Westhoff, P.10
-
21
-
-
0038457836
-
HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs
-
K. Meierhoff S. Felder T. Nakamura N. Bechtold G. Schuster HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB - psbT - psbH - petB - petD RNAs Plant Cell 15 2003 1480 1495
-
(2003)
Plant Cell
, vol.15
, pp. 1480-1495
-
-
Meierhoff, K.1
Felder, S.2
Nakamura, T.3
Bechtold, N.4
Schuster, G.5
-
22
-
-
0028272427
-
A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms
-
A. Barkan M. Walker M. Nolasco D. Johnson A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms EMBO J. 13 1994 3170 3181
-
(1994)
EMBO J.
, vol.13
, pp. 3170-3181
-
-
Barkan, A.1
Walker, M.2
Nolasco, M.3
Johnson, D.4
-
23
-
-
0033522445
-
Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression
-
D.G. Fisk M.B. Walker A. Barkan Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression EMBO J. 18 1999 2621 2630
-
(1999)
EMBO J.
, vol.18
, pp. 2621-2630
-
-
Fisk, D.G.1
Walker, M.B.2
Barkan, A.3
-
24
-
-
0029999945
-
The 3′ untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators
-
R. Rott R.G. Drager D.B. Stern G. Schuster The 3′ untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators Mol. Gen. Genet. 252 1996 676 683
-
(1996)
Mol. Gen. Genet.
, vol.252
, pp. 676-683
-
-
Rott, R.1
Drager, R.G.2
Stern, D.B.3
Schuster, G.4
-
25
-
-
0023663880
-
Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription
-
D.B. Stern W. Gruissem Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription Cell 51 1987 1145 1157
-
(1987)
Cell
, vol.51
, pp. 1145-1157
-
-
Stern, D.B.1
Gruissem, W.2
-
26
-
-
0029917715
-
Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins
-
R. Hayes J. Kudla G. Schuster L. Gabay P. Maliga W. Gruissem Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins EMBO J. 15 1996 1132 1141
-
(1996)
EMBO J.
, vol.15
, pp. 1132-1141
-
-
Hayes, R.1
Kudla, J.2
Schuster, G.3
Gabay, L.4
Maliga, P.5
Gruissem, W.6
-
27
-
-
0027479546
-
3′ end maturation of the Chlamydomonas reinhardtii chloroplast atpB mRNA is a two-step process
-
D.B. Stern K.L. Kindle 3′ end maturation of the Chlamydomonas reinhardtii chloroplast atpB mRNA is a two-step process Mol. Cell. Biol. 13 1993 2277 2285
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 2277-2285
-
-
Stern, D.B.1
Kindle, K.L.2
-
28
-
-
0024965007
-
Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 and PS II
-
M.R. Kuchka M. Goldschmidt-Clermont J. van Dillewijn J.D. Rochaix Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast psbD transcript encoding polypeptide D2 and PS II Cell 58 1989 869 876
-
(1989)
Cell
, vol.58
, pp. 869-876
-
-
Kuchka, M.R.1
Goldschmidt-Clermont, M.2
van Dillewijn, J.3
Rochaix, J.D.4
-
29
-
-
0031910348
-
In vivo evidence for 5′ → 3′ exoribonuclease degradation of an unstable chloroplast mRNA
-
R.G. Drager J. Girard-Bascou Y. Choquet K.L. Kindle D.B. Stern In vivo evidence for 5′ → 3′ exoribonuclease degradation of an unstable chloroplast mRNA Plant J. 13 1998 85 96
-
(1998)
Plant J.
, vol.13
, pp. 85-96
-
-
Drager, R.G.1
Girard-Bascou, J.2
Choquet, Y.3
Kindle, K.L.4
Stern, D.B.5
-
30
-
-
0036462588
-
An mRNA 3′ processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts
-
A. Hicks R.G. Drager D.C. Higgs D.B. Stern An mRNA 3′ processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts J. Biol. Chem. 277 2002 3325 3333
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 3325-3333
-
-
Hicks, A.1
Drager, R.G.2
Higgs, D.C.3
Stern, D.B.4
-
31
-
-
0034601028
-
The Nac2 gene of Chlamydomonas reinhardtii encodes a chloroplast TPR protein involved in psbD mRNA stability, processing and⧸or translation
-
E. Boudreau J. Nickelsen S.D. Lemair F. Ossenbuhl J.-D. Rochaix The Nac2 gene of Chlamydomonas reinhardtii encodes a chloroplast TPR protein involved in psbD mRNA stability, processing and⧸or translation EMBO J. 19 2000 3366 3376
-
(2000)
EMBO J.
, vol.19
, pp. 3366-3376
-
-
Boudreau, E.1
Nickelsen, J.2
Lemair, S.D.3
Ossenbuhl, F.4
Rochaix, J.-D.5
-
32
-
-
0034687823
-
Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB⧸psbT⧸psbH gene cluster in Chlamydomonas reinhardtii
-
F.E. Vaistij E. Boudreau S.D. Lemaire M. Goldschmidt-Clermont J.D. Rochaix Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB⧸psbT⧸psbH gene cluster in Chlamydomonas reinhardtii Proc. Natl. Acad. Sci. USA 97 2000 14813 14818
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 14813-14818
-
-
Vaistij, F.E.1
Boudreau, E.2
Lemaire, S.D.3
Goldschmidt-Clermont, M.4
Rochaix, J.D.5
-
33
-
-
0029973094
-
Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells
-
A. Jacobson S.W. Peltz Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells Annu. Rev. Biochem. 65 1996 693 739
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 693-739
-
-
Jacobson, A.1
Peltz, S.W.2
-
34
-
-
0015979314
-
Polyadenylic acid polymerase and polyguanylic acid polymerase in wheat chloroplasts
-
G. Burkard E.B. Keller Polyadenylic acid polymerase and polyguanylic acid polymerase in wheat chloroplasts Proc. Natl. Acad. Sci. USA 71 1974 389 393
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 389-393
-
-
Burkard, G.1
Keller, E.B.2
-
35
-
-
0017095649
-
Poly(adenylic acid)-containing RNA from plastids of maize
-
L.A. Haff L. Bogorad Poly(adenylic acid)-containing RNA from plastids of maize Biochemistry 15 1976 4110 4115
-
(1976)
Biochemistry
, vol.15
, pp. 4110-4115
-
-
Haff, L.A.1
Bogorad, L.2
-
36
-
-
0017227073
-
Poly(A)-associated RNA from the mitochondrial fraction of the fungus Trichoderma
-
D. Rosen M. Edelman Poly(A)-associated RNA from the mitochondrial fraction of the fungus Trichoderma Eur. J. Biochem. 63 1976 525 532
-
(1976)
Eur. J. Biochem.
, vol.63
, pp. 525-532
-
-
Rosen, D.1
Edelman, M.2
-
37
-
-
0031009317
-
Polyadenylation of mRNA in prokaryotes
-
N. Sarkar Polyadenylation of mRNA in prokaryotes Annu. Rev. Biochem. 66 1997 173 197
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 173-197
-
-
Sarkar, N.1
-
38
-
-
0032916509
-
mRNA degradation. A tale of poly(A) and multiprotein machines
-
A.J. Carpousis N.F. Vanzo L.C. Raynal mRNA degradation. A tale of poly(A) and multiprotein machines Trends Genet. 15 1999 24 28
-
(1999)
Trends Genet.
, vol.15
, pp. 24-28
-
-
Carpousis, A.J.1
Vanzo, N.F.2
Raynal, L.C.3
-
39
-
-
0032617132
-
Degradation of mRNA in Escherichia coli: An old problem with some new twists
-
G.A. Coburn G.A. Mackie Degradation of mRNA in Escherichia coli : An old problem with some new twists Prog. Nucleic Acid Res. Mol. Biol. 62 1999 55 108
-
(1999)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.62
, pp. 55-108
-
-
Coburn, G.A.1
Mackie, G.A.2
-
40
-
-
0028923019
-
Surprises at the 3′ end of prokaryotic RNA
-
S.N. Cohen Surprises at the 3′ end of prokaryotic RNA Cell 80 1995 829 832
-
(1995)
Cell
, vol.80
, pp. 829-832
-
-
Cohen, S.N.1
-
41
-
-
0242400018
-
Degradation of mRNA in bacteria: Emergence of ubiquitous features
-
P. Regnier C.M. Arraiano Degradation of mRNA in bacteria: Emergence of ubiquitous features Bioessays 22 2000 235 244
-
(2000)
Bioessays
, vol.22
, pp. 235-244
-
-
Regnier, P.1
Arraiano, C.M.2
-
42
-
-
0033993926
-
Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhardtii
-
Y. Komine L. Kwong M.C. Anguera G. Schuster D.B. Stern Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhardtii RNA 6 2000 598 607
-
(2000)
RNA
, vol.6
, pp. 598-607
-
-
Komine, Y.1
Kwong, L.2
Anguera, M.C.3
Schuster, G.4
Stern, D.B.5
-
43
-
-
0030468099
-
Polyadenylation accelerates degradation of chloroplast mRNA
-
J. Kudla R. Hayes W. Gruissem Polyadenylation accelerates degradation of chloroplast mRNA EMBO J. 15 1996 7137 7146
-
(1996)
EMBO J.
, vol.15
, pp. 7137-7146
-
-
Kudla, J.1
Hayes, R.2
Gruissem, W.3
-
44
-
-
0029828944
-
Addition of poly(A)-rich sequences to endonucleolytic cleavage sites in the degradation of spinach chloroplast mRNA
-
I. Lisitsky P. Klaff G. Schuster Addition of poly(A)-rich sequences to endonucleolytic cleavage sites in the degradation of spinach chloroplast mRNA Proc. Natl. Acad. Sci. USA 93 1996 13398 13403
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 13398-13403
-
-
Lisitsky, I.1
Klaff, P.2
Schuster, G.3
-
45
-
-
0033180187
-
Update on chloroplast molecular biology: Polyadenylation and degradation of mRNA in the chloroplast
-
G. Schuster I. Lisitsky P. Klaff Update on chloroplast molecular biology: Polyadenylation and degradation of mRNA in the chloroplast Plant Physiol. 120 1999 937 944
-
(1999)
Plant Physiol.
, vol.120
, pp. 937-944
-
-
Schuster, G.1
Lisitsky, I.2
Klaff, P.3
-
46
-
-
0031465234
-
Blocking polyadenylation of mRNA in the chloroplast inhibits its degradation
-
I. Lisitsky P. Klaff G. Schuster Blocking polyadenylation of mRNA in the chloroplast inhibits its degradation Plant J. 12 1997 1173 1178
-
(1997)
Plant J.
, vol.12
, pp. 1173-1178
-
-
Lisitsky, I.1
Klaff, P.2
Schuster, G.3
-
47
-
-
0037133701
-
Evidence for in vivo modulation of chloroplast RNA stability by 3′-UTR homopolymeric tails in Chlamydomonas reinhardtii
-
Y. Komine E. Kikis G. Schuster D. Stern Evidence for in vivo modulation of chloroplast RNA stability by 3′-UTR homopolymeric tails in Chlamydomonas reinhardtii Proc. Natl. Acad. Sci. USA 99 2002 4085 4090
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4085-4090
-
-
Komine, Y.1
Kikis, E.2
Schuster, G.3
Stern, D.4
-
48
-
-
0030748658
-
The mechanism of preferential degradation of polyadenylated RNA in the chloroplast: The exoribonuclease 100RNP-polynucleotide phosphorylase displays high binding affinity for poly(A) sequences
-
I. Lisitsky A. Kotler G. Schuster The mechanism of preferential degradation of polyadenylated RNA in the chloroplast: The exoribonuclease 100RNP-polynucleotide phosphorylase displays high binding affinity for poly(A) sequences J. Biol. Chem. 272 1997 17648 17653
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 17648-17653
-
-
Lisitsky, I.1
Kotler, A.2
Schuster, G.3
-
49
-
-
0141453035
-
Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins
-
S. Yehudai-Resheff V. Portnoy S. Yogev N. Adir G. Schuster Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins Plant Cell 15 2003 2003 2019
-
(2003)
Plant Cell
, vol.15
, pp. 2003-2019
-
-
Yehudai-Resheff, S.1
Portnoy, V.2
Yogev, S.3
Adir, N.4
Schuster, G.5
-
50
-
-
0037184518
-
The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria
-
M. Dreyfus P. Regnier The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria Cell 111 2002 611 613
-
(2002)
Cell
, vol.111
, pp. 611-613
-
-
Dreyfus, M.1
Regnier, P.2
-
51
-
-
0033133680
-
Degrading chloroplast mRNA: The role of polyadenylation
-
R. Hayes J. Kudla W. Gruissem Degrading chloroplast mRNA: The role of polyadenylation Trends Biochem. Sci. 24 1999 199 202
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 199-202
-
-
Hayes, R.1
Kudla, J.2
Gruissem, W.3
-
52
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3′ to 5′ exonuclease and a poly(A) polymerase in Escherichia coli
-
B.K. Mohanty S.R. Kushner Polynucleotide phosphorylase functions both as a 3′ to 5′ exonuclease and a poly(A) polymerase in Escherichia coli Proc. Natl. Acad. Sci. USA 97 2000 11966 11971
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
53
-
-
0031727237
-
The Bacillus subtilis nucleotidyltransferase is a tRNA CCA-adding enzyme
-
L.C. Raynal H.M. Krisch A.J. Carpousis The Bacillus subtilis nucleotidyltransferase is a tRNA CCA-adding enzyme J. Bacteriol. 180 1998 6276 6282
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6276-6282
-
-
Raynal, L.C.1
Krisch, H.M.2
Carpousis, A.J.3
-
54
-
-
0037074014
-
Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP
-
F. Li Y. Xiong J. Wang H.D. Cho K. Tomita A.M. Weiner T.A. Steitz Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP Cell 111 2002 815 824
-
(2002)
Cell
, vol.111
, pp. 815-824
-
-
Li, F.1
Xiong, Y.2
Wang, J.3
Cho, H.D.4
Tomita, K.5
Weiner, A.M.6
Steitz, T.A.7
-
55
-
-
0029903451
-
CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: Characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae
-
D. Yue N. Maizels A.M. Weiner CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: Characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae RNA 2 1996 895 908
-
(1996)
RNA
, vol.2
, pp. 895-908
-
-
Yue, D.1
Maizels, N.2
Weiner, A.M.3
-
56
-
-
0029807307
-
A plant poly(A) polymerase requires a novel RNA-binding protein for activity
-
Q.S. Li J.D. Gupta A.G. Hunt A plant poly(A) polymerase requires a novel RNA-binding protein for activity J. Biol. Chem. 271 1996 19831 19835
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 19831-19835
-
-
Li, Q.S.1
Gupta, J.D.2
Hunt, A.G.3
-
57
-
-
0034934778
-
Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts
-
S. Yehudai-Resheff M. Hirsh G. Schuster Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts Mol. Cell. Biol. 21 2001 5408 5416
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 5408-5416
-
-
Yehudai-Resheff, S.1
Hirsh, M.2
Schuster, G.3
-
58
-
-
0034767932
-
Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome
-
S. Baginsky A. Shteiman-Kotler V. Liveanu S. Yehudai-Resheff M. Bellaoui R.E. Settlage J. Shabanowitz D.F. Hunt G. Schuster W. Gruissem Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome RNA 7 2001 1464 1475
-
(2001)
RNA
, vol.7
, pp. 1464-1475
-
-
Baginsky, S.1
Shteiman-Kotler, A.2
Liveanu, V.3
Yehudai-Resheff, S.4
Bellaoui, M.5
Settlage, R.E.6
Shabanowitz, J.7
Hunt, D.F.8
Schuster, G.9
Gruissem, W.10
-
59
-
-
0018800375
-
Equilibrium constants under physiological conditions for the reactions of polynucleotide phosphorylase and RNA polymerase
-
J. Liegel R.W. Guynn Equilibrium constants under physiological conditions for the reactions of polynucleotide phosphorylase and RNA polymerase J. Biol. Chem. 254 1979 1992 1997
-
(1979)
J. Biol. Chem.
, vol.254
, pp. 1992-1997
-
-
Liegel, J.1
Guynn, R.W.2
-
60
-
-
77956896894
-
Polynucleotide phosphorylase
-
U.Z. Littauer H. Soreq Polynucleotide phosphorylase P.D. Boyer “The Enzymes,” 1982 Academic Press New York 517 553
-
(1982)
, pp. 517-553
-
-
Littauer, U.Z.1
Soreq, H.2
-
61
-
-
0037121925
-
PNPase activity determines the efficiency of mRNA 3′-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts
-
M. Walter J. Kilian J. Kudla PNPase activity determines the efficiency of mRNA 3′-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts EMBO J. 21 2002 6905 6914
-
(2002)
EMBO J.
, vol.21
, pp. 6905-6914
-
-
Walter, M.1
Kilian, J.2
Kudla, J.3
-
62
-
-
0038182527
-
RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli
-
R. Rott G. Zipor V. Portnoy V. Liveanu G. Schuster RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli J. Biol. Chem. 278 2003 15771 15777
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 15771-15777
-
-
Rott, R.1
Zipor, G.2
Portnoy, V.3
Liveanu, V.4
Schuster, G.5
-
64
-
-
0036549769
-
The Escherichia coli RNA degradosome: Structure, function and relationship in other ribonucleolytic multienzyme complexes
-
A.J. Carpousis The Escherichia coli RNA degradosome: Structure, function and relationship in other ribonucleolytic multienzyme complexes Biochem. Soc. Trans. 30 2002 150 155
-
(2002)
Biochem. Soc. Trans.
, vol.30
, pp. 150-155
-
-
Carpousis, A.J.1
-
66
-
-
0037449772
-
The yeast mitochondrial degradosome: Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism
-
A. Dziembowski J. Piwowarski R. Hoser M. Minczuk A. Dmochowska M. Siep H. van der Spek L. Grivell P.P. Stepien The yeast mitochondrial degradosome: Its composition, interplay between RNA helicase and RNase activities and the role in mitochondrial RNA metabolism J. Biol. Chem. 278 2003 1603 1611
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 1603-1611
-
-
Dziembowski, A.1
Piwowarski, J.2
Hoser, R.3
Minczuk, M.4
Dmochowska, A.5
Siep, M.6
van der Spek, H.7
Grivell, L.8
Stepien, P.P.9
-
67
-
-
0034745504
-
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
-
E.V. Koonin Y.I. Wolf L. Aravind Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach Genome Res. 11 2001 240 252
-
(2001)
Genome Res.
, vol.11
, pp. 240-252
-
-
Koonin, E.V.1
Wolf, Y.I.2
Aravind, L.3
-
70
-
-
0003395950
-
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
-
W.P. Donovan S.R. Kushner Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12 Proc. Natl. Acad. Sci. USA 83 1986 120 124
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 120-124
-
-
Donovan, W.P.1
Kushner, S.R.2
-
72
-
-
0018791193
-
A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA
-
M. Ono M. Kuwano A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA J. Mol. Biol. 129 1979 343 357
-
(1979)
J. Mol. Biol.
, vol.129
, pp. 343-357
-
-
Ono, M.1
Kuwano, M.2
-
73
-
-
0018034154
-
Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli
-
B.K. Ghora D. Apirion Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli Cell 15 1978 1055 1066
-
(1978)
Cell
, vol.15
, pp. 1055-1066
-
-
Ghora, B.K.1
Apirion, D.2
-
74
-
-
0019476056
-
Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division
-
K. Goldblum D. Apririon Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division J. Bacteriol. 146 1981 128 132
-
(1981)
J. Bacteriol.
, vol.146
, pp. 128-132
-
-
Goldblum, K.1
Apririon, D.2
-
75
-
-
0019515477
-
Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E
-
B.K. Ray D. Apirion Transfer RNA precursors are accumulated in Escherichia coli in the absence of RNase E Eur. J. Biochem. 114 1981 517 524
-
(1981)
Eur. J. Biochem.
, vol.114
, pp. 517-524
-
-
Ray, B.K.1
Apirion, D.2
-
76
-
-
0033214259
-
Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase
-
G.A. Coburn X. Miao D.J. Briant G.A. Mackie Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3′ exonuclease and a DEAD-box RNA helicase Genes Dev. 13 1999 2594 2603
-
(1999)
Genes Dev.
, vol.13
, pp. 2594-2603
-
-
Coburn, G.A.1
Miao, X.2
Briant, D.J.3
Mackie, G.A.4
-
77
-
-
0034005317
-
Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis
-
X. Jiang A. Diwa J.G. Belasco Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis J. Bacteriol. 182 2000 2468 2475
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2468-2475
-
-
Jiang, X.1
Diwa, A.2
Belasco, J.G.3
-
78
-
-
0038687705
-
A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains
-
K. Lee S.N. Cohen A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains Mol. Microbiol. 48 2003 349 360
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 349-360
-
-
Lee, K.1
Cohen, S.N.2
-
79
-
-
0027273009
-
The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
-
K.J. McDowall R.G. Hernandez S. Lin-Chao S.N. Cohen The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus J. Bacteriol. 175 1993 4245 4249
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4245-4249
-
-
McDowall, K.J.1
Hernandez, R.G.2
Lin-Chao, S.3
Cohen, S.N.4
-
80
-
-
51649139576
-
Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
-
M. Reith J. Munholland Complete nucleotide sequence of the Porphyra purpurea chloroplast genome Plant Mol. Biol. Rep. 13 1995 333 335
-
(1995)
Plant Mol. Biol. Rep.
, vol.13
, pp. 333-335
-
-
Reith, M.1
Munholland, J.2
-
81
-
-
0033621040
-
The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
-
M. Turmel C. Otis C. Lemieux The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea : Insights into the architecture of ancestral chloroplast genomes Proc. Natl. Acad. Sci. USA 96 1999 10248 10253
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10248-10253
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
82
-
-
0030221344
-
CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease
-
J. Yang G. Schuster D.B. Stern CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease Plant Cell 8 1996 1409 1420
-
(1996)
Plant Cell
, vol.8
, pp. 1409-1420
-
-
Yang, J.1
Schuster, G.2
Stern, D.B.3
-
83
-
-
0031007946
-
The spinach chloroplast endoribonuclease CSP41 cleaves the 3′ untranslated region of petD mRNA primarily within its terminal stem-loop structure
-
J. Yang D.B. Stern The spinach chloroplast endoribonuclease CSP41 cleaves the 3′ untranslated region of petD mRNA primarily within its terminal stem-loop structure J. Biol. Chem. 272 1997 12784 12880
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 12784-12880
-
-
Yang, J.1
Stern, D.B.2
-
84
-
-
0346056732
-
CSP41, a mutltifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts
-
T. Bollenbach D. Tatman D. Stern CSP41, a mutltifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts Plant J 36 2003 842 852
-
(2003)
Plant J
, vol.36
, pp. 842-852
-
-
Bollenbach, T.1
Tatman, D.2
Stern, D.3
-
85
-
-
0032551718
-
Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteriod dehydrogenases
-
M.E. Baker W.N. Grundy C.P. Elkan Spinach CSP41, an mRNA-binding protein and ribonuclease, is homologous to nucleotide-sugar epimerases and hydroxysteriod dehydrogenases Biochem. Biophys. Res. Comm. 248 1998 250 254
-
(1998)
Biochem. Biophys. Res. Comm.
, vol.248
, pp. 250-254
-
-
Baker, M.E.1
Grundy, W.N.2
Elkan, C.P.3
-
86
-
-
0036183076
-
Short-chain dehydrogenase⧸reductase (SDR) relationships: A large family with eight clusters common to human, animal, and plant genomes
-
Y. Kallberg U. Oppermann H. Jornvall B. Persson Short-chain dehydrogenase⧸reductase (SDR) relationships: A large family with eight clusters common to human, animal, and plant genomes Protein Sci. 11 2002 636 641
-
(2002)
Protein Sci.
, vol.11
, pp. 636-641
-
-
Kallberg, Y.1
Oppermann, U.2
Jornvall, H.3
Persson, B.4
-
88
-
-
0043163808
-
Divalent metal-dependent catalysis and cleavage specificity of CSP41, a chloroplast endoribonuclease belonging to the short chain dehydrogenase⧸reductase superfamily
-
T.J. Bollenbach D.B. Stern Divalent metal-dependent catalysis and cleavage specificity of CSP41, a chloroplast endoribonuclease belonging to the short chain dehydrogenase⧸reductase superfamily Nucleic Acids Res. 31 2003 4317 4325
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4317-4325
-
-
Bollenbach, T.J.1
Stern, D.B.2
-
91
-
-
0034634663
-
Gene-specific trans-regulatory functions of magnesium for chloroplast mRNA stability in higher plants
-
M. Horlitz P. Klaff Gene-specific trans -regulatory functions of magnesium for chloroplast mRNA stability in higher plants J. Biol. Chem. 275 2000 35638 35645
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 35638-35645
-
-
Horlitz, M.1
Klaff, P.2
-
92
-
-
0037376136
-
Light-induced increase in free Mg(2+) concentration in spinach chloroplasts: Measurement of free Mg(2+) by using a fluorescent probe and necessity of stromal alkalinization
-
S. Ishijima A. Uchibori H. Takagi R. Maki M. Ohnishi Light-induced increase in free Mg(2+) concentration in spinach chloroplasts: Measurement of free Mg(2+) by using a fluorescent probe and necessity of stromal alkalinization Arch. Biochem. Biophys. 412 2003 126 132
-
(2003)
Arch. Biochem. Biophys.
, vol.412
, pp. 126-132
-
-
Ishijima, S.1
Uchibori, A.2
Takagi, H.3
Maki, R.4
Ohnishi, M.5
-
93
-
-
0024979241
-
Chloroplast gene expression: How plants turn their plastids on
-
W. Gruissem Chloroplast gene expression: How plants turn their plastids on Cell 56 1989 161 170
-
(1989)
Cell
, vol.56
, pp. 161-170
-
-
Gruissem, W.1
-
94
-
-
0005820503
-
Depletion of yeast RNase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA
-
S. Abou Elela M. Ares Jr. Depletion of yeast RNase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA EMBO J. 17 1998 3738 3746
-
(1998)
EMBO J.
, vol.17
, pp. 3738-3746
-
-
Abou Elela, S.1
Ares, M.2
-
95
-
-
0028971144
-
mRNA decay in spinach chloroplasts: psbA mRNA degradation is initiated by endonucleolytic cleavages within the coding region
-
P. Klaff mRNA decay in spinach chloroplasts: psbA mRNA degradation is initiated by endonucleolytic cleavages within the coding region Nucleic Acids Res. 23 1995 4885 4892
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4885-4892
-
-
Klaff, P.1
-
96
-
-
0141817918
-
Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to the 70S ribosome
-
K. Yamaguchi M.V. Beligni S. Prieto P.A. Haynes W.H. McDonald J.R. Yates 3rd S.P. Mayfield Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to the 70S ribosome J. Biol. Chem. 278 2003 33774 33785
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 33774-33785
-
-
Yamaguchi, K.1
Beligni, M.V.2
Prieto, S.3
Haynes, P.A.4
McDonald, W.H.5
Yates, J.R.6
Mayfield, S.P.7
-
97
-
-
0033962832
-
The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.): Integration of a prokaryotic core into a larger complex with organelle-specific functions
-
T. Pfannschmidt K. Ogrzewalla S. Baginsky A. Sickmann H.E. Meyer G. Link The multisubunit chloroplast RNA polymerase A from mustard ( Sinapis alba L.): Integration of a prokaryotic core into a larger complex with organelle-specific functions Eur. J. Biochem. 267 2000 253 261
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 253-261
-
-
Pfannschmidt, T.1
Ogrzewalla, K.2
Baginsky, S.3
Sickmann, A.4
Meyer, H.E.5
Link, G.6
-
99
-
-
0033368475
-
Messenger RNA stability and its role in control of gene expression in bacteria and phages
-
M. Grunberg-Manago Messenger RNA stability and its role in control of gene expression in bacteria and phages Annu. Rev. Genet. 33 1999 193 227
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 193-227
-
-
Grunberg-Manago, M.1
-
102
-
-
0037168641
-
Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence
-
M. Leszczyniecka D.C. Kang D. Sarkar Z.Z. Su M. Holmes K. Valerie P.B. Fisher Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence Proc. Natl. Acad. Sci. USA 99 2002 16636 16641
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16636-16641
-
-
Leszczyniecka, M.1
Kang, D.C.2
Sarkar, D.3
Su, Z.Z.4
Holmes, M.5
Valerie, K.6
Fisher, P.B.7
-
103
-
-
0041589211
-
Down-regulation of Myc as a potential target for growth arrest induced by human polynucleotide phosphorylase (hPNPaseold-35) in human melanoma cells
-
D. Sarkar M. Leszczyniecka D.C. Kang I.V. Lebedeva K. Valerie S. Dhar T.K. Pandita P.B. Fisher Down-regulation of Myc as a potential target for growth arrest induced by human polynucleotide phosphorylase (hPNPaseold-35) in human melanoma cells J. Biol. Chem. 278 2003 24542 24551
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 24542-24551
-
-
Sarkar, D.1
Leszczyniecka, M.2
Kang, D.C.3
Lebedeva, I.V.4
Valerie, K.5
Dhar, S.6
Pandita, T.K.7
Fisher, P.B.8
-
104
-
-
0037869109
-
Human polynucleotide phosphorylase, hPNPase, is localized in mitochondria
-
J. Piwowarski P. Grzechnik A. Dziembowski A. Dmochowska M. Minczuk P.P. Stepien Human polynucleotide phosphorylase, hPNPase, is localized in mitochondria J. Mol. Biol. 329 2003 853 857
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 853-857
-
-
Piwowarski, J.1
Grzechnik, P.2
Dziembowski, A.3
Dmochowska, A.4
Minczuk, M.5
Stepien, P.P.6
-
106
-
-
0034435974
-
A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
-
M.F. Symmons G.H. Jones B.F. Luisi A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation Struc. Fold Des. 8 2000 1215 1226
-
(2000)
Struc. Fold Des.
, vol.8
, pp. 1215-1226
-
-
Symmons, M.F.1
Jones, G.H.2
Luisi, B.F.3
-
108
-
-
0035283033
-
Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
-
Y. Zuo M.P. Deutscher Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution Nucleic Acids Res. 29 2001 1017 1026
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1017-1026
-
-
Zuo, Y.1
Deutscher, M.P.2
-
109
-
-
0036023943
-
A complex prediction: Three-dimensional model of the yeast exosome
-
P. Aloy F.D. Ciccarelli C. Leutwein A.C. Gavin G. Superti-Furga P. Bork B. Bottcher R.B. Russell A complex prediction: Three-dimensional model of the yeast exosome EMBO Rep. 3 2002 628 635
-
(2002)
EMBO Rep.
, vol.3
, pp. 628-635
-
-
Aloy, P.1
Ciccarelli, F.D.2
Leutwein, C.3
Gavin, A.C.4
Superti-Furga, G.5
Bork, P.6
Bottcher, B.7
Russell, R.B.8
-
111
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
W.V. Ng S.P. Kennedy G.G. Mahairas B. Berquist M. Pan H.D. Shukla S.R. Lasky N.S. Baliga V. Thorsson J. Sbrogna S. Swartzell D. Weir J. Hall T.A. Dahl R. Welti Y.A. Goo B. Leithauser K. Keller R. Cruz M.I. Danson D.W. Hough D.G. Maddocks P.E. Jablonski M.P. Krebs C.M. Angevine H. Dale T.A. Isenbarger R.F. Peck M. Pohlschroder J.L. Spudich K.-H. Jung M. Alam T. Freitas S. Hou C.J. Daniels P.P. Dennis A.D. Omer H. Ebhardt T.M. Lowe P. Liang M. Riley L. Hood S. DasSarma Genome sequence of Halobacterium species NRC-1 Proc. Natl. Acad. Sci. USA 97 2000 12176 12181
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
Kennedy, S.P.2
Mahairas, G.G.3
Berquist, B.4
Pan, M.5
Shukla, H.D.6
Lasky, S.R.7
Baliga, N.S.8
Thorsson, V.9
Sbrogna, J.10
Swartzell, S.11
Weir, D.12
Hall, J.13
Dahl, T.A.14
Welti, R.15
Goo, Y.A.16
Leithauser, B.17
Keller, K.18
Cruz, R.19
Danson, M.I.20
Hough, D.W.21
Maddocks, D.G.22
Jablonski, P.E.23
Krebs, M.P.24
Angevine, C.M.25
Dale, H.26
Isenbarger, T.A.27
Peck, R.F.28
Pohlschroder, M.29
Spudich, J.L.30
Jung, K.-H.31
Alam, M.32
Freitas, T.33
Hou, S.34
Daniels, C.J.35
Dennis, P.P.36
Omer, A.D.37
Ebhardt, H.38
Lowe, T.M.39
Liang, P.40
Riley, M.41
Hood, L.42
DasSarma, S.43
more..
-
112
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ to 5′ exoribonucleases
-
P. Mitchell E. Petfalski A. Shevchenko M. Mann D. Tollervey The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ to 5′ exoribonucleases Cell 91 1997 457 466
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, E.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
113
-
-
0037077311
-
Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
-
Z.F. Cheng M.P. Deutscher Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II J. Biol. Chem. 277 2002 21624 21629
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 21624-21629
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
114
-
-
0026666335
-
The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli
-
K.O. Kelly M.P. Deutscher The presence of only one of five exoribonucleases is sufficient to support the growth of Escherichia coli J. Bacteriol. 174 1992 6682 6684
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6682-6684
-
-
Kelly, K.O.1
Deutscher, M.P.2
-
115
-
-
0036719292
-
mRNA decay in Escherichia coli comes of age
-
S.R. Kushner mRNA decay in Escherichia coli comes of age J. Bacteriol. 184 2002 4658 4665
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4658-4665
-
-
Kushner, S.R.1
-
116
-
-
0031725399
-
The yeast nuclear gene DSS1, which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA
-
A. Dziembowski M. Malewicz M. Minczuk P. Golik A. Dmochowska P.P. Stepien The yeast nuclear gene DSS1 , which codes for a putative RNase II, is necessary for the function of the mitochondrial degradosome in processing and turnover of RNA Mol. Gen. Genet. 260 1998 108 114
-
(1998)
Mol. Gen. Genet.
, vol.260
, pp. 108-114
-
-
Dziembowski, A.1
Malewicz, M.2
Minczuk, M.3
Golik, P.4
Dmochowska, A.5
Stepien, P.P.6
-
117
-
-
0030764692
-
Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively
-
A.W. Johnson Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively Mol. Cell. Biol. 17 1997 6122 6130
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 6122-6130
-
-
Johnson, A.W.1
-
118
-
-
0034610344
-
Novel features of the XRN-family in Arabidopsis: Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p⧸Rat1p, functions in the cytoplasm
-
J.P. Kastenmayer P.J. Green Novel features of the XRN-family in Arabidopsis : Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p⧸Rat1p, functions in the cytoplasm Proc. Natl. Acad. Sci. USA 97 2000 13985 13990
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13985-13990
-
-
Kastenmayer, J.P.1
Green, P.J.2
-
119
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
V. Anantharaman E.V. Koonin L. Aravind Comparative genomics and evolution of proteins involved in RNA metabolism Nucleic Acids Res. 30 2002 1427 1464
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
120
-
-
0036267108
-
cDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor
-
P. Bralley G.H. Jones cDNA cloning confirms the polyadenylation of RNA decay intermediates in Streptomyces coelicolor Microbiology 148 2002 1421 1425
-
(2002)
Microbiology
, vol.148
, pp. 1421-1425
-
-
Bralley, P.1
Jones, G.H.2
-
122
-
-
0345097567
-
The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase, can polyadenylate RNA
-
B. Sohlberg J. Huang S.N. Cohen The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(A) polymerase, can polyadenylate RNA J. Bacteriol. 185 2003 7273 7278
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7273-7278
-
-
Sohlberg, B.1
Huang, J.2
Cohen, S.N.3
-
123
-
-
0037307321
-
Nitrogen vs. phosphorus limitation across an ecotonal gradient in a mangrove forest
-
I.C. Feller K.L. McKee D.F. Whigham J.P. O'Neill Nitrogen vs. phosphorus limitation across an ecotonal gradient in a mangrove forest Biogeochemistry 62 2003 145 175
-
(2003)
Biogeochemistry
, vol.62
, pp. 145-175
-
-
Feller, I.C.1
McKee, K.L.2
Whigham, D.F.3
O'Neill, J.P.4
-
127
-
-
0036835530
-
Molecular mechanisms of phosphate transport in plants
-
C. Rausch M. Bucher Molecular mechanisms of phosphate transport in plants Planta 216 2002 23 37
-
(2002)
Planta
, vol.216
, pp. 23-37
-
-
Rausch, C.1
Bucher, M.2
-
129
-
-
0016148166
-
Light-dependent redistribution of ions in suspensions of chloroplast thylakoid membranes
-
G. Hind H.Y. Nakatani S. Izawa Light-dependent redistribution of ions in suspensions of chloroplast thylakoid membranes Proc. Natl. Acad. Sci. USA 71 1974 1484 1488
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 1484-1488
-
-
Hind, G.1
Nakatani, H.Y.2
Izawa, S.3
-
130
-
-
0036316780
-
Magnesium transport and function in plants: The tip of the iceberg
-
O. Shaul Magnesium transport and function in plants: The tip of the iceberg Biometals 15 2002 309 323
-
(2002)
Biometals
, vol.15
, pp. 309-323
-
-
Shaul, O.1
-
131
-
-
0034671289
-
Kinetic analysis of the M1 RNA folding pathway
-
O. Kent S.G. Chaulk A.M. MacMillan Kinetic analysis of the M1 RNA folding pathway J. Mol. Biol. 304 2000 699 705
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 699-705
-
-
Kent, O.1
Chaulk, S.G.2
MacMillan, A.M.3
-
133
-
-
0032419499
-
On the role of magnesium ions in RNA stability
-
V.K. Misra D.E. Draper On the role of magnesium ions in RNA stability Biopolymers 48 1998 113 135
-
(1998)
Biopolymers
, vol.48
, pp. 113-135
-
-
Misra, V.K.1
Draper, D.E.2
-
134
-
-
0032755049
-
Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs
-
T. Nakamura M. Ohta M. Sugiura M. Sugita Chloroplast ribonucleoproteins are associated with both mRNAs and intron-containing precursor tRNAs FEBS Lett. 460 1999 437 441
-
(1999)
FEBS Lett.
, vol.460
, pp. 437-441
-
-
Nakamura, T.1
Ohta, M.2
Sugiura, M.3
Sugita, M.4
-
135
-
-
1542710228
-
Changes in the 5′-untranslated region of the rbcL gene accelerate transcript degradation more than 50-fold in the chloroplast of Chlamydomonas reinhardtii
-
M. Salvador L. Suay I. Anthonisen U. Klein Changes in the 5′-untranslated region of the rbcL gene accelerate transcript degradation more than 50-fold in the chloroplast of Chlamydomonas reinhardtii Curr. Genet 45 2004 176 182
-
(2004)
Curr. Genet
, vol.45
, pp. 176-182
-
-
Salvador, M.1
Suay, L.2
Anthonisen, I.3
Klein, U.4
-
136
-
-
0032192543
-
rbcL transcript levels in tobacco plastids are independent of light. Reduced dark transcription rate is compensated by increased mRNA stability
-
T. Shiina L. Allison P. Maliga rbcL transcript levels in tobacco plastids are independent of light. Reduced dark transcription rate is compensated by increased mRNA stability Plant Cell 10 1998 1713 1722
-
(1998)
Plant Cell
, vol.10
, pp. 1713-1722
-
-
Shiina, T.1
Allison, L.2
Maliga, P.3
-
137
-
-
0027582419
-
The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3′ end formation in vitro
-
J. Nickelsen G. Link The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3′ end formation in vitro Plant J. 3 1993 537 544
-
(1993)
Plant J.
, vol.3
, pp. 537-544
-
-
Nickelsen, J.1
Link, G.2
-
138
-
-
0026344374
-
Specific ribonuclease activities in spinach chloroplasts promote mRNA maturation and degradation
-
H. Chen D.B. Stern Specific ribonuclease activities in spinach chloroplasts promote mRNA maturation and degradation J. Biol. Chem. 266 1991 24205 24211
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 24205-24211
-
-
Chen, H.1
Stern, D.B.2
-
139
-
-
0028287843
-
Determinants for stability of the chloroplast psbD RNA are located within its short leader region in Chlamydomonas reinhardtii
-
J. Nickelsen J. Van-Dillewijn M. Rahire J.D. Rochaix Determinants for stability of the chloroplast psbD RNA are located within its short leader region in Chlamydomonas reinhardtii EMBO J. 13 1994 3182 3191
-
(1994)
EMBO J.
, vol.13
, pp. 3182-3191
-
-
Nickelsen, J.1
Van-Dillewijn, J.2
Rahire, M.3
Rochaix, J.D.4
-
140
-
-
0028843347
-
Differential transcription of pea chloroplast genes during light-induced leaf development: Continuous far-red light activates chloroplast transcription
-
A.N. Dubell J.E. Mullet Differential transcription of pea chloroplast genes during light-induced leaf development: Continuous far-red light activates chloroplast transcription Plant Physiol. 109 1995 105 112
-
(1995)
Plant Physiol.
, vol.109
, pp. 105-112
-
-
Dubell, A.N.1
Mullet, J.E.2
-
141
-
-
0027617142
-
Direct evidence for selective modulation of psbA, rpoA, rbcL, and 16S RNA stability during barley chloroplast development
-
M. Kim D.A. Christopher J.E. Mullet Direct evidence for selective modulation of psbA , rpoA , rbcL , and 16S RNA stability during barley chloroplast development Plant Mol. Biol. 22 1993 447 463
-
(1993)
Plant Mol. Biol.
, vol.22
, pp. 447-463
-
-
Kim, M.1
Christopher, D.A.2
Mullet, J.E.3
-
142
-
-
0037109210
-
Endonucleolytic activation directs dark-induced chloroplast mRNA degradation
-
S. Baginsky W. Gruissem Endonucleolytic activation directs dark-induced chloroplast mRNA degradation Nucleic Acids Res. 30 2002 4527 4533
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4527-4533
-
-
Baginsky, S.1
Gruissem, W.2
-
143
-
-
0021967957
-
E. coli RNases: Making sense of alphabet soup
-
M.P. Deutscher E. coli RNases: Making sense of alphabet soup Cell 40 1985 731 732
-
(1985)
Cell
, vol.40
, pp. 731-732
-
-
Deutscher, M.P.1
-
145
-
-
0037143757
-
Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch- and specific clock-controlled genes
-
R.A. Gutierrez R.M. Ewing J.M. Cherry P.J. Green Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: Rapid decay is associated with a group of touch- and specific clock-controlled genes Proc. Natl. Acad. Sci. USA 99 2002 11513 11518
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11513-11518
-
-
Gutierrez, R.A.1
Ewing, R.M.2
Cherry, J.M.3
Green, P.J.4
-
146
-
-
0347416978
-
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast
-
F. He X. Li P. Spatrick R. Casillo S. Dong A. Jacobson Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast Mol. Cell 12 2003 1439 1452
-
(2003)
Mol. Cell
, vol.12
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
Casillo, R.4
Dong, S.5
Jacobson, A.6
-
147
-
-
0037370460
-
Life after transcription—revisiting the fate of messenger RNA
-
A.B. Khodursky J.A. Bernstein Life after transcription—revisiting the fate of messenger RNA Trends Genet. 19 2003 113 115
-
(2003)
Trends Genet.
, vol.19
, pp. 113-115
-
-
Khodursky, A.B.1
Bernstein, J.A.2
|