The PIN and LAX families of auxin transport genes in Medicago truncatula

Molecular Genetics and Genomics

Volumn 272, Issue 4, 2004, Pages 420-432

  Schnabel, E L ^a   Frugoli, J ^a  

^a CLEMSON UNIVERSITY   (United States)

Author keywords

Auxin; LAX genes; Legumes; Medicago truncatula; PIN genes

Indexed keywords

ARABIDOPSIS; ARTICLE; AUXIN TRANSPORT; GENE DUPLICATION; GENE EXPRESSION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; MEDICAGO; MOLECULAR PHYLOGENY; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PLANT ROOT; PRIORITY JOURNAL; STATISTICAL SIGNIFICANCE;

BASE SEQUENCE; CHROMOSOME MAPPING; DNA PRIMERS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE LIBRARY; INDOLEACETIC ACIDS; LIKELIHOOD FUNCTIONS; MEDICAGO TRUNCATULA; MEMBRANE TRANSPORT PROTEINS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ARABIDOPSIS; DICOTYLEDONEAE; LILIOPSIDA; MEDICAGO TRUNCATULA;

EID: 11244279755     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-004-1057-x     Document Type: Article

References (61)

1. Allen EK, Allen ON, Newman AS (1953) Pseudonodulation of leguminous plants induced by 1-bromo-3,5-dichlorobenzoic acid. Am J Bot 40:429-435
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped blast and Psi-Blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Benkova E, Michniewicz M, Sauer M, Teichmann T, Seifertova D, Jurgens G, Friml J (2003) Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115:591-602
4. Boot KJM, van Brussel AAN, Tak T, Spaink HP, Kijne JW (1999) Lipochitin oligosaccharides from Rhizobium leguminosarum bv. viciae reduce auxin transport capacity in Vicia sativa subsp. nigra roots. Mol Plant-Microbe Interact 12:839-844
5. Choi HK, Kim D, Uhm T, Limpens E, Lim H, Mun JH, Kalo P, Penmetsa RV, Seres A, Kulikova O, Roe BA, Bisseling T, Kiss GB, Cook DR (2004) A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. saliva. Genetics 166:1413-1502
6. Cook D (1999) Medicago truncatula -a model in the making! Curr Opin Plant Biol 2:301-304
7. Cook D, VandenBosch K, Huguet T, de Bruijn FJ (1997) Model legumes get the nod. Plant Cell 9:275-281
8. De Billy F, Grosjean C, May S, Bennett MJ, Cullimore JV (2001) Expression studies on AUX1 -like genes in Medicago truncatula suggest that auxin is required at two steps in early nodule development. Mol Plant-Microbe Interact 14:267-277
9. Estelle M (2001) Transporters on the move. Nature 413:374-375
10. Friml J, Benkova E, Blilou I, Wisniewska J, Hamann T, Ljung K, Woody S, Sandberg G, Scheres B, Jurgens G, Palme K (2002a) AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108:661-673
11. Friml J, Wisniewska J, Benkova E, Mendgen K, Palme K (2002b) Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature 415:806-809
12. Friml J, Vieten A, Sauer M, Weijers D, Schwartz H, Hamann T, Offringa R, Jurgens G (2003) Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426:147-153
13. Frugoli J, Harris J (2001) Medicago truncatula on the move. Plant Cell 13:458-463
14. Fry SC, Wangermann E (1976) Polar transport of auxin through embryos. New Phytologist 77:313-317
15. Galweiler L, Guan C, Muller A, Wisman E, Mendgen K, Yephremov A, Palme K (1998) Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282:2226-2230
16. Geldner N, Friml J, Stierhof YD, Jurgens G, Palme K (2001) Auxin transport inhibitors block PIN1 cycling and vesicle trafficking. Nature 413:425-428
17. Geldner N, Anders N, Wolters H, Keicher J, Kornberger W, Muller P, Delbarre A, Ueda T, Nakano A, Jürgens G (2003) The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112:219-230
18. Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J (2001) BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev 5:1985-1997
19. Guan L, Scandalios JG (1996) Molecular evolution of maize catalases and their relationship to other eukaryotic and prokaryotic catalases. J Mol Evol 42:570-579
20. Harrison MJ (2000) Molecular genetics of model legumes. Trends Plant Sci 5:414-415
21. Hirsch AM, Fang Y (1994) Plant hormones and nodulation: what's the connection? Plant Mol Biol 26:5-9
22. Hirsch AM, Bhuvaneswari TV, Torrey JG, Bisseling T (1989) Early nodulin genes are induced in alfalfa root outgrowths elicited by auxin transport inhibitors. Proc natl Acad Sci USA 86:1244-1248
23. Jacobs M, Rubery PH (1988) Naturally occurring auxin transport regulators. Science 241:346-349
24. Kalo P, Endre G, Zimanyi L, Csanadi G, Kiss GB (2000) Construction of an improved linkage map of diploid alfalfa (Medicago sativa). Theor Appl Genet 100:641-657
25. Kiss GB, Kereszt A, Kiss P, Endre G (1998) Colormapping: a non-mathematical procedure for genetic mapping. Acta Biol Hung 49:125-142
26. Koonin EV (2001) An apology for orthologs-or brave new memes. Genome Biol 2:1005.1-1005.2
27. Kulikova O, Gualtieri G, Geurts R, Kim DJ, Cook D, Huguet T, de Jong JH, Fransz PF, Bisseling T (2001) Integration of the FISH pachytene and genetic maps of Medicago truncatula. Plant J 27:49-58
28. Leyser O (2001) Auxin. Curr Biol 11:R728
29. Lomax TL, Muday GK, Rubery PH (1995) Auxin transport. In: Davies PJ (ed) Plant hormones: physiology, biochemistry, and molecular biology. Kluwer, Dordrecht, pp 508-530
30. Luschnig C, Gaxiola RA, Grisafi P, Fink GR (1998) EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana. Genes Dev 12:2175-2187
31. Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155
32. Marchant A, Bhalerao R, Casimiro I, Eklof J, Casero PJ, Bennett M, Sandberg G (2002) AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling. Plant Cell 14:589-597
33. Mathesius U, Schlaman HR, Spaink H, Sautter C, Rolfe B, Djordjevic MA (1998) Auxin transport inhibition precedes root nodule formation in white clover roots and is regulated by flavanoids and derivatives of chitin oligosaccharides. Plant J 14:23-34
34. Muday GK, Murphy AS (2002) An emerging model of auxin transport regulation. Plant Cell 14:293-299
35. Muday GK, Peer WA, Murphy AS (2003) Vesicular cycling mechanisms that control auxin transport polarity. Trends Plant Sci 8:301-304
36. Muller A, Guan C, Galweiler L, Tanzler P, Huijser P, Marchant A, Parry G, Bennett M, Wisman E, Palme K (1998) AtPIN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J 17:6903-6911
37. Nam YW, Penmesta RV, Endre G, Uribe P, Kim DJ, Cook DR (1999) Construction of a bacterial artificial chromosome library of Medicago truncatula and identification of clones containing ethylene response genes. Theor Appl Genet 98:638-646
38. Nemhauser JL, Zambryski PC, Roe JL (1998) Auxin signaling in Arabidopsis flower development? Curr Opin Plant Biol 1:531-535
39. Newcomb W, Wetherell DF (1970) The efffects of 2,4,6- trichlorophenoxyacetic acid on embryogenesis in wild type carrot tissue cultures. Bot Gazette 131:242-245.
40. Noh B, Murphy AS, Spaulding EP (2001) Multi-drug resistance - like genes of Arabidopsis required for auxin transport and auxin-mediated development. Plant Cell 13:2441-2454
41. Oldroyd G, Geurts R (2001) Medicago truncatula, going where no plant has gone before. Trends Plant Sci 6:552-554
42. Pacios Bras C, Schlaman HRM, Boot KJM, Admiraal P, Langerak JM, Stougaard J, Spaink HP (2003) Auxin distribution in Lotus japonicus during root nodule development. Plant Mol Biol 52:1169-1180
43. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358
44. Parry G, Marchant A, May S, Swarup R, Swarup K, James N, Graham N, Allen T, Martucci T, Yemm A, Napier R, Manning K, King G, Bennett M (2001) Quick on the uptake: characterization of a family of plant auxin influx carriers. J Plant Growth Regul 20:217-225
45. Peer WA, Bandyopadhyay A, Blakeslee JJ, Makam SN, Chen RJ, Masson P, Murphy AS (2004) Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. Plant Cell 16:1898-1911
46. Philippar K, Fuchs I, Luthen H, Hoth S, Bauer C, Haga K, Theil G, Ljung K, Sandberg G, Bottger M, Becker D, Hedrich R (1999) Auxin-induced K+ channel expression represents an essential step in coleoptile growth and gravitropism. Proc Natl Acad Sci USA 96:12186-12191
47. Rashotte AM, Brady SR, Reed RC, Ante SJ, Muday GK (2000) Basipetal auxin transport is required for gravitropism in roots of Arabidopsis. Plant Physiol 122:481-491
48. Rashotte AM, DeLong A, Muday GK (2001) Genetic and chemical reductions in protein phosphatase activity alter auxin transport, gravity response, and lateral root growth. Plant Cell 13:1683-1697
49. Reinhardt D, Pesce E, Stieger P, Mandel T, Baltensperger K, Bennett M, Traas J, Friml J, Kuhlemeier C (2003) Regulation of phyllotaxis by polar auxin transport. Nature 426:255-260
50. Sachs T (1993) The role of auxin in the polar organization of apical meristems. J Plant Physiol 20:541-553
51. Scheres B, Berleth T (1998) Root development: new meanings for root canals? Curr Opin Plant Biol 1:32-36
52. Scheres B, McKhann HI, Zalensky A, Lobler M, Bosseling T, Hirsch A (1992) The PSENOD12 gene is expressed at two different sites in Afghanistan pea psuedonodules induced by auxin transport inhibitors. Plant Physiol 100:1649-1655
53. Schiavone FM, Cook TJ (1987) Unusual patterns of somatic embryogenesis in the domesticated carrot: developmental effects of exogenous auxins and auxin transport inhibitors. Cell Diff 21:53-62
54. Schrader J, Baba K, May ST, Palme K, Bennett M, Bhalerao RP, Sandberg G (2003) Polar auxin transport in the wood-forming tissues of hybrid aspen is under simultaneous control of developmental and environmental signals. Proc Natl Acad Sci USA 100:10096-10101
55. Sessions A, Nemhauser JL, McColl A, Roe JL, Feldmann KA, Zambryski PC (1997) ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development 124:4481-4491
56. Steinmann T, Geldner N, Grebe M, Mangold S, Jackson C, Paris S, Galweiler L, Palme K, Jurgens G (1999) Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 286:316-318
57. Swarup R, Friml J, Marchant A, Ljung K, Sandberg G, Palme K, Bennett MJ (2001) Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex. Genes Dev 15:2648-2653
58. Van de Weil C, Norris JH, Bochenek B, Dickstein R, Bisseling T, Hirsch AM (1990) Nodulin gene expression and ENOD2 localization in effective, fixing and ineffective, bacteria free nodules of alfalfa. Plant Cell 2:1009-1017
59. Wolfe KH (2001) Yesterday's polyploids and the mystery of diploidization. Nature Rev Genet 2:333-341
60. Yu J, et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92
61. Zhong R, Ye ZH (2001) Alteration of auxin polar transport in the Arabidopsis ifl1 mutants. Plant Physiol 126:549-563