메뉴 건너뛰기




Volumn 3, Issue 6, 2004, Pages 1289-1291

Phylomat: An automated protein motif analysis tool for phylogenomics

Author keywords

Archaea; Bacteria; Domains; Eukarya; Evolution; Motifs; Phylogenomics; Proteome

Indexed keywords

PROTEOME;

EID: 11144326733     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr0499040     Document Type: Article
Times cited : (2)

References (15)
  • 1
    • 0038518196 scopus 로고    scopus 로고
    • Phylogenomics: Intersection of evolution and genomics
    • Eisen, J. A.; Fraser, C. M. Phylogenomics: intersection of evolution and genomics. Science 2003, 300, 1706-1707.
    • (2003) Science , vol.300 , pp. 1706-1707
    • Eisen, J.A.1    Fraser, C.M.2
  • 2
    • 0031976258 scopus 로고    scopus 로고
    • Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
    • Eisen, J. A. Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res. 1998, 8, 163-167.
    • (1998) Genome Res. , vol.8 , pp. 163-167
    • Eisen, J.A.1
  • 3
    • 0036601353 scopus 로고    scopus 로고
    • Trends in protein evolution inferred from sequence and structure analysis
    • Aravind, L.; Mazumder, R.; Vasudevan, S.; Koonin, E. V. Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struct. Biol. 2002, 12, 392-399.
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 392-399
    • Aravind, L.1    Mazumder, R.2    Vasudevan, S.3    Koonin, E.V.4
  • 4
    • 0036600834 scopus 로고    scopus 로고
    • Evolution of protein structures and functions
    • Kinch, L. N.; Grishin, N. V. Evolution of protein structures and functions. Curr. Opin. Struct. Biol. 2002, 12, 400-408.
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 400-408
    • Kinch, L.N.1    Grishin, N.V.2
  • 6
    • 0029809212 scopus 로고    scopus 로고
    • Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences
    • Makalowski, W.; Zhang, J.; Boguski, M. S. Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences. Genome Res. 1996, 6, 846-857.
    • (1996) Genome Res. , vol.6 , pp. 846-857
    • Makalowski, W.1    Zhang, J.2    Boguski, M.S.3
  • 7
    • 0031877893 scopus 로고    scopus 로고
    • Large-scale taxonomic profiling of eukaryotic model organisms: A comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes
    • Mushegian, A. R.; Garey, J. R.; Martin, J.; Liu, L. X. Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes. Genome Res. 1998, 8, 590-598.
    • (1998) Genome Res. , vol.8 , pp. 590-598
    • Mushegian, A.R.1    Garey, J.R.2    Martin, J.3    Liu, L.X.4
  • 8
    • 0034739818 scopus 로고    scopus 로고
    • Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale
    • Xie, T.; Ding, D. Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale. Gene 2000, 261, 305-310.
    • (2000) Gene , vol.261 , pp. 305-310
    • Xie, T.1    Ding, D.2
  • 10
    • 0035058359 scopus 로고    scopus 로고
    • Evolution of prokaryotic gene order: Genome rearrangements in closely related species
    • Suyama, M.; Bork, P. Evolution of prokaryotic gene order: genome rearrangements in closely related species. Trends Genet. 2001, 17, 10-13.
    • (2001) Trends Genet. , vol.17 , pp. 10-13
    • Suyama, M.1    Bork, P.2
  • 12
  • 13
    • 0013017592 scopus 로고    scopus 로고
    • RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs
    • Zmasek, C. M.; Eddy, S. R. RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 2002, 3, 14.
    • (2002) BMC Bioinformatics , vol.3 , pp. 14
    • Zmasek, C.M.1    Eddy, S.R.2
  • 14
    • 0142028973 scopus 로고    scopus 로고
    • Comprehensive analysis of orthologous protein domains using the HOPS database
    • Storm, C. E.; Sonnhammer, E. L. Comprehensive analysis of orthologous protein domains using the HOPS database. Genome Res. 2003, 13, 2353-2362.
    • (2003) Genome Res. , vol.13 , pp. 2353-2362
    • Storm, C.E.1    Sonnhammer, E.L.2
  • 15
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L.; Stoeckert, C. J.; Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003, 13, 2178-2189.
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.